Wall clock time and date at job start Mon Mar 30 2020 06:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50694 * 109.47079 * 2 1 4 4 N 1.31782 * 122.75089 * 89.97654 * 3 2 1 5 5 C 1.29026 * 117.12305 * 180.02562 * 4 3 2 6 6 C 1.50703 * 124.91417 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.46807 * 89.99916 * 6 5 4 8 8 N 1.46901 * 109.46916 * 179.97438 * 7 6 5 9 9 C 1.46905 * 110.99870 * 180.02562 * 8 7 6 10 10 H 1.09003 * 109.47224 * 325.00460 * 9 8 7 11 11 C 1.53002 * 109.47102 * 85.00132 * 9 8 7 12 12 C 1.50702 * 109.47206 * 205.00135 * 9 8 7 13 13 H 1.08003 * 119.99769 * 0.02562 * 12 9 8 14 14 C 1.37868 * 119.99983 * 180.02562 * 12 9 8 15 15 N 1.31517 * 120.00292 * 180.02562 * 14 12 9 16 16 Si 1.86800 * 120.00277 * 359.97438 * 14 12 9 17 17 H 1.48498 * 109.46965 * 90.00152 * 16 14 12 18 18 H 1.48503 * 109.47392 * 210.00172 * 16 14 12 19 19 H 1.48504 * 109.47211 * 330.00313 * 16 14 12 20 20 S 1.70979 * 110.17009 * 0.22979 * 5 4 3 21 21 C 1.33643 * 122.74975 * 270.00088 * 3 2 1 22 22 C 1.50706 * 126.03511 * 359.97438 * 21 3 2 23 23 H 1.09000 * 109.47112 * 299.99660 * 1 2 3 24 24 H 1.08999 * 109.47280 * 59.99595 * 1 2 3 25 25 H 1.09001 * 109.47381 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.46702 * 240.00175 * 2 1 3 27 27 H 1.08999 * 109.47280 * 120.00405 * 2 1 3 28 28 H 1.08995 * 109.47327 * 330.00604 * 6 5 4 29 29 H 1.08996 * 109.47062 * 209.99461 * 6 5 4 30 30 H 1.09004 * 109.46889 * 60.00274 * 7 6 5 31 31 H 1.08995 * 109.47384 * 299.99914 * 7 6 5 32 32 H 1.00901 * 111.00067 * 303.95263 * 8 7 6 33 33 H 1.08999 * 109.47105 * 180.02562 * 11 9 8 34 34 H 1.08996 * 109.46950 * 299.99914 * 11 9 8 35 35 H 1.09003 * 109.46813 * 60.00077 * 11 9 8 36 36 H 0.96997 * 120.00409 * 180.02562 * 15 14 12 37 37 H 1.08999 * 109.46887 * 90.00450 * 22 21 3 38 38 H 1.09003 * 109.46367 * 210.00153 * 22 21 3 39 39 H 1.08997 * 109.46876 * 329.99518 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2695 2.0931 1.1083 5 6 2.6971 3.3038 0.9818 6 6 3.0226 4.2278 2.1270 7 6 4.4930 4.0601 2.5154 8 7 4.8104 4.9612 3.6314 9 6 6.2175 4.8277 4.0319 10 1 6.5311 3.7901 3.9173 11 6 7.0867 5.7237 3.1472 12 6 6.3714 5.2429 5.4724 13 1 5.5099 5.5725 6.0343 14 6 7.6117 5.2019 6.0728 15 7 7.7460 5.5638 7.3301 16 14 9.1015 4.6312 5.1011 17 1 9.7364 5.7982 4.4376 18 1 10.0776 3.9931 6.0207 19 1 8.6750 3.6486 4.0726 20 16 2.8342 3.7107 -0.6732 21 6 2.2733 2.1024 -1.1240 22 6 2.0920 1.5880 -2.5289 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5139 0.8899 28 1 2.3911 3.9839 2.9813 29 1 2.8421 5.2592 1.8243 30 1 5.1245 4.3039 1.6611 31 1 4.6735 3.0287 2.8181 32 1 4.5905 5.9178 3.3976 33 1 8.1308 5.6244 3.4441 34 1 6.9754 5.4234 2.1054 35 1 6.7731 6.7614 3.2618 36 1 8.6187 5.5353 7.7525 37 1 1.0793 1.8063 -2.8678 38 1 2.8092 2.0753 -3.1895 39 1 2.2566 0.5107 -2.5454 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068615431.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:38 Heat of formation + Delta-G solvation = 7.523181 kcal Electronic energy + Delta-G solvation = -17804.136785 eV Core-core repulsion = 15065.086295 eV Total energy + Delta-G solvation = -2739.050490 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.04102 -38.34484 -35.80329 -34.56295 -33.02558 -32.34114 -29.97026 -27.20388 -26.96144 -25.13267 -24.30416 -22.38071 -22.10557 -19.78149 -18.91152 -18.74505 -16.99864 -16.61424 -16.26241 -15.96292 -15.37760 -15.23756 -14.95134 -14.62261 -14.44296 -14.14339 -13.92595 -13.83033 -13.61722 -13.45332 -13.13371 -13.07777 -12.80377 -12.68532 -12.30803 -12.14510 -12.01458 -11.90569 -11.75160 -11.48156 -11.21888 -10.76038 -10.55850 -10.17204 -9.52221 -9.09256 -8.27557 -6.30185 -0.29094 0.37825 0.76247 1.28222 1.34890 1.44501 1.78341 2.31536 3.00208 3.06327 3.54405 3.93852 4.03322 4.06561 4.12109 4.21575 4.37006 4.43110 4.43699 4.47249 4.55922 4.63760 4.67470 4.73203 4.87249 4.91024 4.93524 4.99002 5.06584 5.09558 5.20398 5.24553 5.36816 5.43840 5.65668 5.97959 6.64136 6.73717 6.77818 6.83861 7.34800 8.89905 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.031305 B = 0.003659 C = 0.003570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.211385 B = 7650.242052 C = 7840.333833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.049 4.049 3 C 0.040 3.960 4 N -0.497 5.497 5 C 0.038 3.962 6 C -0.033 4.033 7 C 0.076 3.924 8 N -0.683 5.683 9 C 0.187 3.813 10 H 0.022 0.978 11 C -0.177 4.177 12 C -0.506 4.506 13 H 0.037 0.963 14 C 0.009 3.991 15 N -0.950 5.950 16 Si 0.952 3.048 17 H -0.263 1.263 18 H -0.298 1.298 19 H -0.255 1.255 20 S 0.135 5.865 21 C -0.226 4.226 22 C -0.073 4.073 23 H 0.036 0.964 24 H 0.062 0.938 25 H 0.079 0.921 26 H 0.102 0.898 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.034 0.966 31 H 0.050 0.950 32 H 0.342 0.658 33 H 0.036 0.964 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.265 0.735 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.291 -8.061 -24.690 28.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.088 4.088 3 C -0.091 4.091 4 N -0.212 5.212 5 C -0.240 4.240 6 C -0.074 4.074 7 C -0.055 4.055 8 N -0.313 5.313 9 C 0.077 3.923 10 H 0.040 0.960 11 C -0.235 4.235 12 C -0.544 4.544 13 H 0.056 0.944 14 C -0.188 4.188 15 N -0.591 5.591 16 Si 0.779 3.221 17 H -0.189 1.189 18 H -0.226 1.226 19 H -0.179 1.179 20 S 0.392 5.608 21 C -0.347 4.347 22 C -0.132 4.132 23 H 0.056 0.944 24 H 0.081 0.919 25 H 0.098 0.902 26 H 0.120 0.880 27 H 0.085 0.915 28 H 0.108 0.892 29 H 0.123 0.877 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.161 0.839 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.180 -7.763 -24.072 28.073 hybrid contribution 1.036 -0.369 -0.029 1.100 sum -11.145 -8.132 -24.102 27.771 Atomic orbital electron populations 1.21660 0.93494 1.02842 1.01591 1.20218 0.96867 0.87991 1.03767 1.20573 1.02752 0.99650 0.86175 1.66129 1.15300 1.06500 1.33246 1.26863 1.02918 0.95130 0.99056 1.20144 0.96713 0.97016 0.93574 1.21790 0.94245 0.97247 0.92236 1.60382 1.22251 1.10925 1.37789 1.19403 0.85090 0.94696 0.93072 0.95971 1.22710 0.99918 1.01635 0.99275 1.21281 0.94228 1.42843 0.96069 0.94423 1.25806 1.01997 0.95241 0.95754 1.70042 1.25022 1.50513 1.13558 0.85815 0.78903 0.79239 0.78123 1.18872 1.22601 1.17894 1.83734 1.61702 1.13869 1.01530 1.26165 1.09648 0.96664 1.02203 1.20398 1.03599 1.02316 0.86903 0.94441 0.91864 0.90192 0.87961 0.91502 0.89241 0.87723 0.94794 0.93147 0.83939 0.94560 0.92168 0.92032 0.92552 0.89157 0.90228 0.88740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 9.89 71.98 0.71 -1.38 16 2 C -0.05 -0.87 6.11 29.85 0.18 -0.69 16 3 C 0.04 0.94 5.99 41.52 0.25 1.19 16 4 N -0.50 -14.84 10.53 -179.40 -1.89 -16.73 16 5 C 0.04 1.05 6.64 88.52 0.59 1.63 16 6 C -0.03 -0.93 6.06 29.85 0.18 -0.75 16 7 C 0.08 2.53 5.47 86.30 0.47 3.00 16 8 N -0.68 -27.40 6.23 -495.42 -3.09 -30.49 16 9 C 0.19 8.80 2.17 44.17 0.10 8.89 16 10 H 0.02 1.10 6.86 -2.39 -0.02 1.09 16 11 C -0.18 -7.17 8.64 71.98 0.62 -6.55 16 12 C -0.51 -29.53 9.42 25.60 0.24 -29.29 16 13 H 0.04 2.47 8.06 -2.91 -0.02 2.44 16 14 C 0.01 0.52 5.45 84.65 0.46 0.98 16 15 N -0.95 -60.51 13.96 21.44 0.30 -60.21 16 16 Si 0.95 45.56 24.37 68.60 1.67 47.24 16 17 H -0.26 -11.78 6.87 99.48 0.68 -11.09 16 18 H -0.30 -14.26 7.11 99.48 0.71 -13.56 16 19 H -0.25 -11.45 6.53 99.48 0.65 -10.80 16 20 S 0.14 2.87 23.18 -56.49 -1.31 1.56 16 21 C -0.23 -4.44 6.59 24.64 0.16 -4.27 16 22 C -0.07 -0.81 10.10 71.24 0.72 -0.09 16 23 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 24 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.08 0.89 8.14 -2.39 -0.02 0.88 16 26 H 0.10 1.27 6.72 -2.39 -0.02 1.25 16 27 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 29 H 0.10 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.03 1.05 7.43 -2.39 -0.02 1.03 16 31 H 0.05 1.90 8.06 -2.39 -0.02 1.88 16 32 H 0.34 12.33 8.47 -89.69 -0.76 11.57 16 33 H 0.04 1.54 3.27 -2.39 -0.01 1.53 16 34 H 0.06 2.03 7.45 -2.39 -0.02 2.01 16 35 H 0.06 2.40 8.13 -2.39 -0.02 2.38 16 36 H 0.27 15.79 8.31 -92.71 -0.77 15.02 16 37 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 39 H 0.09 0.79 6.76 -2.39 -0.02 0.77 16 Total: -1.00 -70.72 325.96 0.57 -70.15 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 0.20 Total: 15.80 kcal Atomic # 6 Polarization: -32.01 SS G_CDS: 4.69 Total: -27.32 kcal Atomic # 7 Polarization: -102.75 SS G_CDS: -4.68 Total: -107.43 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.67 Total: 47.24 kcal Atomic # 16 Polarization: 2.87 SS G_CDS: -1.31 Total: 1.56 kcal Total: -70.72 0.57 -70.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068615431.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.675 kcal (2) G-P(sol) polarization free energy of solvation -70.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds