Wall clock time and date at job start Mon Mar 30 2020 06:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50704 * 109.47454 * 2 1 4 4 N 1.31787 * 122.74453 * 89.97631 * 3 2 1 5 5 C 1.29020 * 117.12002 * 180.02562 * 4 3 2 6 6 C 1.50703 * 124.91627 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47040 * 90.00034 * 6 5 4 8 8 N 1.46899 * 109.47303 * 180.02562 * 7 6 5 9 9 C 1.46894 * 111.00313 * 179.97438 * 8 7 6 10 10 H 1.08998 * 109.46828 * 35.00794 * 9 8 7 11 11 C 1.52997 * 109.47515 * 275.00230 * 9 8 7 12 12 C 1.50706 * 109.47162 * 154.99823 * 9 8 7 13 13 H 1.07998 * 119.99629 * 0.02562 * 12 9 8 14 14 C 1.37875 * 119.99955 * 179.97438 * 12 9 8 15 15 N 1.31510 * 120.00308 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99908 * 180.02562 * 14 12 9 17 17 H 1.48500 * 109.47233 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46997 * 120.00173 * 16 14 12 19 19 H 1.48501 * 109.47364 * 240.00497 * 16 14 12 20 20 S 1.70983 * 110.17109 * 0.22603 * 5 4 3 21 21 C 1.33634 * 122.75045 * 270.00250 * 3 2 1 22 22 C 1.50704 * 126.03820 * 359.96736 * 21 3 2 23 23 H 1.09002 * 109.47326 * 300.00241 * 1 2 3 24 24 H 1.09000 * 109.47019 * 59.99990 * 1 2 3 25 25 H 1.08998 * 109.47422 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47326 * 239.99759 * 2 1 3 27 27 H 1.09006 * 109.47670 * 120.00242 * 2 1 3 28 28 H 1.08993 * 109.46830 * 329.99825 * 6 5 4 29 29 H 1.09003 * 109.47343 * 209.99959 * 6 5 4 30 30 H 1.09003 * 109.47574 * 60.00150 * 7 6 5 31 31 H 1.09003 * 109.46991 * 300.00141 * 7 6 5 32 32 H 1.00906 * 110.99722 * 56.04008 * 8 7 6 33 33 H 1.09002 * 109.47153 * 59.99762 * 11 9 8 34 34 H 1.09001 * 109.46832 * 299.99953 * 11 9 8 35 35 H 1.09004 * 109.47261 * 179.97438 * 11 9 8 36 36 H 0.96998 * 120.00365 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.46698 * 90.00666 * 22 21 3 38 38 H 1.09002 * 109.47026 * 209.99891 * 22 21 3 39 39 H 1.09000 * 109.47120 * 330.00778 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2695 2.0930 1.1084 5 6 2.6972 3.3037 0.9820 6 6 3.0227 4.2276 2.1272 7 6 4.4930 4.0599 2.5157 8 7 4.8102 4.9600 3.6324 9 6 6.2169 4.8256 4.0337 10 1 6.8291 4.6329 3.1528 11 6 6.3578 3.6623 5.0174 12 6 6.6748 6.1004 4.6944 13 1 5.9892 6.9275 4.8054 14 6 7.9686 6.2104 5.1580 15 7 8.8033 5.2031 5.0233 16 14 8.5359 7.7902 5.9775 17 1 7.4146 8.7633 6.0063 18 1 8.9729 7.4981 7.3664 19 1 9.6711 8.3651 5.2119 20 16 2.8345 3.7107 -0.6730 21 6 2.2733 2.1024 -1.1239 22 6 2.0921 1.5881 -2.5289 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 2.3911 3.9838 2.9814 29 1 2.8422 5.2591 1.8246 30 1 5.1247 4.3037 1.6614 31 1 4.6735 3.0284 2.8183 32 1 4.1941 4.7967 4.4147 33 1 6.0266 2.7403 4.5396 34 1 5.7455 3.8552 5.8983 35 1 7.4017 3.5623 5.3148 36 1 9.7136 5.2806 5.3491 37 1 1.0794 1.8064 -2.8678 38 1 2.8093 2.0754 -3.1894 39 1 2.2565 0.5107 -2.5454 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068615433.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:42 Heat of formation + Delta-G solvation = 19.972640 kcal Electronic energy + Delta-G solvation = -17733.222367 eV Core-core repulsion = 14994.711726 eV Total energy + Delta-G solvation = -2738.510641 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -40.03784 -36.46209 -34.57666 -32.87960 -31.75472 -30.81703 -27.86915 -25.93141 -25.11116 -24.21271 -23.01812 -21.16248 -20.19130 -18.77858 -17.89974 -16.28957 -15.41738 -15.19730 -14.76813 -14.56052 -14.19020 -13.95847 -13.59059 -13.34716 -13.10867 -12.92009 -12.63950 -12.41623 -12.11523 -12.04081 -11.55092 -11.52350 -11.22676 -11.02014 -10.90677 -10.89316 -10.65468 -10.36547 -10.11305 -9.89167 -9.51863 -9.17252 -8.99499 -8.54137 -8.34827 -7.25542 -5.96572 -3.99966 0.72079 1.36370 1.78618 2.79345 3.33186 3.40757 3.46188 4.06389 4.45953 4.72291 4.84295 4.91441 5.04518 5.13307 5.22640 5.29535 5.35019 5.44483 5.45392 5.57327 5.62834 5.69284 5.78344 5.89198 5.97109 6.00630 6.21912 6.38032 6.43101 6.72656 6.87366 7.12063 7.37290 7.75948 7.82769 7.89802 8.28239 8.53443 8.61870 9.07539 9.65371 11.10593 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.037046 B = 0.003384 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.637545 B = 8271.325815 C = 8551.148513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.048 4.048 3 C 0.066 3.934 4 N -0.472 5.472 5 C 0.069 3.931 6 C -0.044 4.044 7 C 0.069 3.931 8 N -0.683 5.683 9 C 0.211 3.789 10 H 0.033 0.967 11 C -0.169 4.169 12 C -0.494 4.494 13 H 0.064 0.936 14 C 0.054 3.946 15 N -0.898 5.898 16 Si 0.897 3.103 17 H -0.272 1.272 18 H -0.286 1.286 19 H -0.285 1.285 20 S 0.116 5.884 21 C -0.239 4.239 22 C -0.071 4.071 23 H 0.058 0.942 24 H 0.053 0.947 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.090 0.910 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.025 0.975 32 H 0.326 0.674 33 H 0.005 0.995 34 H 0.028 0.972 35 H 0.089 0.911 36 H 0.259 0.741 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.959 -8.470 -13.515 21.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.088 4.088 3 C -0.066 4.066 4 N -0.185 5.185 5 C -0.209 4.209 6 C -0.085 4.085 7 C -0.062 4.062 8 N -0.313 5.313 9 C 0.104 3.896 10 H 0.051 0.949 11 C -0.229 4.229 12 C -0.533 4.533 13 H 0.082 0.918 14 C -0.146 4.146 15 N -0.538 5.538 16 Si 0.726 3.274 17 H -0.197 1.197 18 H -0.212 1.212 19 H -0.212 1.212 20 S 0.372 5.628 21 C -0.360 4.360 22 C -0.130 4.130 23 H 0.077 0.923 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.096 0.904 27 H 0.098 0.902 28 H 0.108 0.892 29 H 0.111 0.889 30 H 0.084 0.916 31 H 0.043 0.957 32 H 0.143 0.857 33 H 0.024 0.976 34 H 0.047 0.953 35 H 0.108 0.892 36 H 0.069 0.931 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -14.404 -7.240 -13.896 21.284 hybrid contribution 0.202 -0.936 0.982 1.372 sum -14.202 -8.177 -12.915 20.865 Atomic orbital electron populations 1.21691 0.94440 1.01739 1.02230 1.20104 0.96073 0.89470 1.03195 1.20120 1.01754 0.98351 0.86378 1.66143 1.15261 1.05778 1.31349 1.27026 1.00884 0.94922 0.98106 1.20364 0.98837 0.96166 0.93147 1.21817 0.92383 0.95447 0.96572 1.60830 1.07488 1.53121 1.09855 1.19179 0.82535 0.93955 0.93973 0.94898 1.22429 1.04345 0.96698 0.99381 1.21202 0.96182 0.99280 1.36645 0.91806 1.24962 0.96726 0.96609 0.96332 1.69896 1.05612 1.30568 1.47689 0.86447 0.78580 0.83504 0.78895 1.19701 1.21229 1.21159 1.84022 1.62024 1.13173 1.03552 1.25636 1.11927 0.97638 1.00788 1.20192 1.02252 1.01255 0.89267 0.92330 0.92775 0.92124 0.90445 0.90205 0.89159 0.88912 0.91613 0.95668 0.85715 0.97598 0.95267 0.89249 0.93134 0.90898 0.91277 0.90448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.89 37.15 0.37 -0.86 16 2 C -0.05 -0.49 6.11 -27.89 -0.17 -0.66 16 3 C 0.07 0.86 5.99 -84.22 -0.50 0.36 16 4 N -0.47 -7.30 10.53 -8.05 -0.08 -7.38 16 5 C 0.07 1.03 6.64 -13.46 -0.09 0.94 16 6 C -0.04 -0.66 6.06 -27.88 -0.17 -0.83 16 7 C 0.07 1.28 5.47 -3.83 -0.02 1.26 16 8 N -0.68 -14.56 6.23 -107.95 -0.67 -15.23 16 9 C 0.21 5.39 2.57 -68.87 -0.18 5.21 16 10 H 0.03 0.92 7.80 -51.93 -0.41 0.52 16 11 C -0.17 -4.17 8.94 37.16 0.33 -3.84 16 12 C -0.49 -13.79 8.84 -34.44 -0.30 -14.10 16 13 H 0.06 1.79 7.81 -52.49 -0.41 1.38 16 14 C 0.05 1.51 5.30 -17.82 -0.09 1.42 16 15 N -0.90 -25.98 11.32 55.43 0.63 -25.35 16 16 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 S 0.12 1.46 23.18 -107.50 -2.49 -1.03 16 21 C -0.24 -2.80 6.59 -35.92 -0.24 -3.04 16 22 C -0.07 -0.57 10.10 36.01 0.36 -0.20 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 24 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.08 0.62 6.72 -51.93 -0.35 0.27 16 27 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 29 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 30 H 0.07 1.25 8.06 -51.93 -0.42 0.83 16 31 H 0.03 0.49 7.43 -51.93 -0.39 0.11 16 32 H 0.33 6.55 8.47 -39.29 -0.33 6.22 16 33 H 0.00 0.12 7.45 -51.93 -0.39 -0.27 16 34 H 0.03 0.68 8.13 -51.93 -0.42 0.26 16 35 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 36 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.52 6.76 -51.93 -0.35 0.17 16 LS Contribution 332.78 15.07 5.01 5.01 Total: -1.00 -30.14 332.78 -9.63 -39.77 By element: Atomic # 1 Polarization: 8.25 SS G_CDS: -6.29 Total: 1.96 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -0.70 Total: -14.34 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: -0.13 Total: -47.96 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -2.49 Total: -1.03 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -30.14 -9.63 -39.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068615433.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.740 kcal (2) G-P(sol) polarization free energy of solvation -30.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds