Wall clock time and date at job start Mon Mar 30 2020 06:30:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50704 * 109.47454 * 2 1 4 4 N 1.31787 * 122.74453 * 89.97631 * 3 2 1 5 5 C 1.29020 * 117.12002 * 180.02562 * 4 3 2 6 6 C 1.50703 * 124.91627 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47040 * 90.00034 * 6 5 4 8 8 N 1.46899 * 109.47303 * 180.02562 * 7 6 5 9 9 C 1.46894 * 111.00313 * 179.97438 * 8 7 6 10 10 H 1.08998 * 109.46828 * 35.00794 * 9 8 7 11 11 C 1.52997 * 109.47515 * 275.00230 * 9 8 7 12 12 C 1.50706 * 109.47162 * 154.99823 * 9 8 7 13 13 H 1.07998 * 119.99629 * 0.02562 * 12 9 8 14 14 C 1.37875 * 119.99955 * 179.97438 * 12 9 8 15 15 N 1.31510 * 120.00308 * 0.02562 * 14 12 9 16 16 Si 1.86800 * 119.99908 * 180.02562 * 14 12 9 17 17 H 1.48500 * 109.47233 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46997 * 120.00173 * 16 14 12 19 19 H 1.48501 * 109.47364 * 240.00497 * 16 14 12 20 20 S 1.70983 * 110.17109 * 0.22603 * 5 4 3 21 21 C 1.33634 * 122.75045 * 270.00250 * 3 2 1 22 22 C 1.50704 * 126.03820 * 359.96736 * 21 3 2 23 23 H 1.09002 * 109.47326 * 300.00241 * 1 2 3 24 24 H 1.09000 * 109.47019 * 59.99990 * 1 2 3 25 25 H 1.08998 * 109.47422 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47326 * 239.99759 * 2 1 3 27 27 H 1.09006 * 109.47670 * 120.00242 * 2 1 3 28 28 H 1.08993 * 109.46830 * 329.99825 * 6 5 4 29 29 H 1.09003 * 109.47343 * 209.99959 * 6 5 4 30 30 H 1.09003 * 109.47574 * 60.00150 * 7 6 5 31 31 H 1.09003 * 109.46991 * 300.00141 * 7 6 5 32 32 H 1.00906 * 110.99722 * 56.04008 * 8 7 6 33 33 H 1.09002 * 109.47153 * 59.99762 * 11 9 8 34 34 H 1.09001 * 109.46832 * 299.99953 * 11 9 8 35 35 H 1.09004 * 109.47261 * 179.97438 * 11 9 8 36 36 H 0.96998 * 120.00365 * 179.97438 * 15 14 12 37 37 H 1.09002 * 109.46698 * 90.00666 * 22 21 3 38 38 H 1.09002 * 109.47026 * 209.99891 * 22 21 3 39 39 H 1.09000 * 109.47120 * 330.00778 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2695 2.0930 1.1084 5 6 2.6972 3.3037 0.9820 6 6 3.0227 4.2276 2.1272 7 6 4.4930 4.0599 2.5157 8 7 4.8102 4.9600 3.6324 9 6 6.2169 4.8256 4.0337 10 1 6.8291 4.6329 3.1528 11 6 6.3578 3.6623 5.0174 12 6 6.6748 6.1004 4.6944 13 1 5.9892 6.9275 4.8054 14 6 7.9686 6.2104 5.1580 15 7 8.8033 5.2031 5.0233 16 14 8.5359 7.7902 5.9775 17 1 7.4146 8.7633 6.0063 18 1 8.9729 7.4981 7.3664 19 1 9.6711 8.3651 5.2119 20 16 2.8345 3.7107 -0.6730 21 6 2.2733 2.1024 -1.1239 22 6 2.0921 1.5881 -2.5289 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8934 -0.5139 0.8900 28 1 2.3911 3.9838 2.9814 29 1 2.8422 5.2591 1.8246 30 1 5.1247 4.3037 1.6614 31 1 4.6735 3.0284 2.8183 32 1 4.1941 4.7967 4.4147 33 1 6.0266 2.7403 4.5396 34 1 5.7455 3.8552 5.8983 35 1 7.4017 3.5623 5.3148 36 1 9.7136 5.2806 5.3491 37 1 1.0794 1.8064 -2.8678 38 1 2.8093 2.0754 -3.1894 39 1 2.2565 0.5107 -2.5454 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068615433.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:42 Heat of formation + Delta-G solvation = 1.340346 kcal Electronic energy + Delta-G solvation = -17734.030324 eV Core-core repulsion = 14994.711726 eV Total energy + Delta-G solvation = -2739.318598 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.03788 -38.17548 -35.79649 -34.54963 -32.74364 -32.19785 -29.47570 -27.27874 -26.93887 -25.11878 -24.25921 -22.36641 -22.16094 -19.77540 -18.88699 -18.35365 -16.82693 -16.57274 -16.22424 -15.90816 -15.25623 -15.22163 -14.93771 -14.48519 -14.16988 -14.04801 -13.82971 -13.53296 -13.50352 -13.24262 -12.99663 -12.87917 -12.77994 -12.62308 -12.40913 -12.21731 -12.05501 -11.90899 -11.82887 -11.73967 -11.06140 -10.58561 -10.49877 -10.17050 -9.52486 -9.05245 -8.09925 -6.21584 -0.29066 0.38380 0.78413 1.43396 1.44832 1.57686 1.77678 2.44606 3.03479 3.18664 3.61661 3.95985 4.05030 4.07317 4.11906 4.31380 4.37687 4.44086 4.49508 4.62422 4.70587 4.72250 4.82707 4.88009 4.89337 4.98162 4.99498 5.06993 5.09530 5.21505 5.25080 5.37902 5.44497 5.67744 5.79082 6.24150 6.58743 6.77591 6.81640 6.93088 7.48517 8.96272 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.037046 B = 0.003384 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 755.637545 B = 8271.325815 C = 8551.148513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.048 4.048 3 C 0.039 3.961 4 N -0.495 5.495 5 C 0.038 3.962 6 C -0.030 4.030 7 C 0.078 3.922 8 N -0.682 5.682 9 C 0.215 3.785 10 H 0.000 1.000 11 C -0.156 4.156 12 C -0.514 4.514 13 H 0.059 0.941 14 C 0.006 3.994 15 N -0.925 5.925 16 Si 0.964 3.036 17 H -0.266 1.266 18 H -0.281 1.281 19 H -0.282 1.282 20 S 0.129 5.871 21 C -0.226 4.226 22 C -0.073 4.073 23 H 0.038 0.962 24 H 0.062 0.938 25 H 0.080 0.920 26 H 0.101 0.899 27 H 0.067 0.933 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.055 0.945 31 H 0.012 0.988 32 H 0.335 0.665 33 H 0.019 0.981 34 H 0.035 0.965 35 H 0.063 0.937 36 H 0.261 0.739 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.078 -8.568 -14.706 23.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.087 4.087 3 C -0.092 4.092 4 N -0.209 5.209 5 C -0.239 4.239 6 C -0.071 4.071 7 C -0.053 4.053 8 N -0.312 5.312 9 C 0.107 3.893 10 H 0.018 0.982 11 C -0.216 4.216 12 C -0.553 4.553 13 H 0.077 0.923 14 C -0.192 4.192 15 N -0.565 5.565 16 Si 0.790 3.210 17 H -0.190 1.190 18 H -0.206 1.206 19 H -0.208 1.208 20 S 0.385 5.615 21 C -0.347 4.347 22 C -0.132 4.132 23 H 0.057 0.943 24 H 0.081 0.919 25 H 0.099 0.901 26 H 0.120 0.880 27 H 0.086 0.914 28 H 0.112 0.888 29 H 0.121 0.879 30 H 0.073 0.927 31 H 0.030 0.970 32 H 0.152 0.848 33 H 0.038 0.962 34 H 0.054 0.946 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.109 0.891 38 H 0.096 0.904 39 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -15.546 -7.343 -15.087 22.873 hybrid contribution 0.523 -0.973 1.249 1.667 sum -15.023 -8.315 -13.838 22.053 Atomic orbital electron populations 1.21656 0.93373 1.02872 1.01629 1.20218 0.96943 0.87803 1.03775 1.20598 1.02767 0.99693 0.86162 1.66133 1.15416 1.06228 1.33166 1.26861 1.02846 0.95171 0.99069 1.20135 0.96112 0.97053 0.93837 1.21728 0.94738 0.93850 0.94982 1.60687 1.05538 1.54177 1.10783 1.18950 0.84308 0.93517 0.92575 0.98194 1.22245 1.02736 0.97122 0.99491 1.21486 0.96600 1.00025 1.37177 0.92278 1.25768 0.96797 0.99778 0.96819 1.70025 1.05890 1.32341 1.48259 0.85412 0.78104 0.79631 0.77891 1.19044 1.20643 1.20771 1.83901 1.61592 1.14063 1.01913 1.26173 1.09620 0.96595 1.02305 1.20398 1.03607 1.02307 0.86875 0.94313 0.91937 0.90118 0.88045 0.91412 0.88840 0.87911 0.92684 0.97016 0.84752 0.96229 0.94593 0.91844 0.92995 0.89056 0.90378 0.88655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.89 71.98 0.71 -1.39 16 2 C -0.05 -0.88 6.11 29.85 0.18 -0.69 16 3 C 0.04 0.97 5.99 41.52 0.25 1.22 16 4 N -0.49 -15.23 10.53 -179.39 -1.89 -17.12 16 5 C 0.04 1.13 6.64 88.52 0.59 1.72 16 6 C -0.03 -0.91 6.06 29.85 0.18 -0.73 16 7 C 0.08 2.93 5.47 86.30 0.47 3.40 16 8 N -0.68 -29.31 6.23 -495.46 -3.09 -32.40 16 9 C 0.22 11.20 2.57 44.17 0.11 11.31 16 10 H 0.00 0.01 7.80 -2.39 -0.02 -0.01 16 11 C -0.16 -7.82 8.94 71.98 0.64 -7.18 16 12 C -0.51 -28.96 8.84 25.60 0.23 -28.73 16 13 H 0.06 3.31 7.81 -2.91 -0.02 3.29 16 14 C 0.01 0.35 5.30 84.65 0.45 0.80 16 15 N -0.92 -54.19 11.32 21.45 0.24 -53.95 16 16 Si 0.96 44.32 29.54 68.60 2.03 46.34 16 17 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 18 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 19 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 20 S 0.13 3.14 23.18 -56.49 -1.31 1.83 16 21 C -0.23 -4.86 6.59 24.64 0.16 -4.70 16 22 C -0.07 -0.93 10.10 71.24 0.72 -0.21 16 23 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 24 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.10 1.33 6.72 -2.39 -0.02 1.32 16 27 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 28 H 0.09 2.71 8.14 -2.39 -0.02 2.69 16 29 H 0.10 2.83 8.14 -2.39 -0.02 2.81 16 30 H 0.05 2.15 8.06 -2.39 -0.02 2.13 16 31 H 0.01 0.47 7.43 -2.39 -0.02 0.45 16 32 H 0.34 13.41 8.47 -89.69 -0.76 12.65 16 33 H 0.02 0.87 7.45 -2.39 -0.02 0.86 16 34 H 0.03 1.69 8.13 -2.39 -0.02 1.67 16 35 H 0.06 3.52 6.07 -2.38 -0.01 3.50 16 36 H 0.26 14.49 8.31 -92.71 -0.77 13.71 16 37 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.09 0.92 6.76 -2.39 -0.02 0.91 16 Total: -1.00 -64.96 332.78 0.95 -64.01 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 0.27 Total: 16.47 kcal Atomic # 6 Polarization: -29.88 SS G_CDS: 4.70 Total: -25.18 kcal Atomic # 7 Polarization: -98.74 SS G_CDS: -4.73 Total: -103.47 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 16 Polarization: 3.14 SS G_CDS: -1.31 Total: 1.83 kcal Total: -64.96 0.95 -64.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068615433.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.350 kcal (2) G-P(sol) polarization free energy of solvation -64.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds