Wall clock time and date at job start Mon Mar 30 2020 06:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46902 * 109.47197 * 2 1 4 4 C 1.46897 * 110.99946 * 297.02439 * 3 2 1 5 5 C 1.53003 * 109.47206 * 288.24654 * 4 3 2 6 6 C 1.46893 * 110.99693 * 60.97612 * 3 2 1 7 7 C 1.53004 * 109.47197 * 66.04889 * 6 3 2 8 8 C 1.50701 * 109.47107 * 179.97438 * 7 6 3 9 9 N 1.29522 * 124.56192 * 89.97553 * 8 7 6 10 10 C 1.30671 * 117.63397 * 180.02562 * 9 8 7 11 11 C 1.50696 * 123.22381 * 180.02562 * 10 9 8 12 12 C 1.38584 * 113.55095 * 0.02562 * 10 9 8 13 13 C 1.40040 * 126.25594 * 179.97438 * 12 10 9 14 14 H 1.07998 * 119.99878 * 359.72618 * 13 12 10 15 15 C 1.40075 * 119.99842 * 179.97438 * 13 12 10 16 16 N 1.30862 * 120.00104 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99700 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47407 * 59.99833 * 17 15 13 19 19 H 1.48504 * 109.47080 * 180.02562 * 17 15 13 20 20 H 1.48506 * 109.46944 * 299.99909 * 17 15 13 21 21 S 1.70882 * 124.56241 * 270.32347 * 8 7 6 22 22 H 1.08997 * 109.47318 * 181.31175 * 1 2 3 23 23 H 1.09002 * 109.46813 * 301.31305 * 1 2 3 24 24 H 1.09008 * 109.47153 * 61.31140 * 1 2 3 25 25 H 1.09000 * 109.46470 * 240.00409 * 2 1 3 26 26 H 1.08994 * 109.47390 * 120.00543 * 2 1 3 27 27 H 1.09005 * 109.47673 * 48.24617 * 4 3 2 28 28 H 1.09003 * 109.47449 * 168.25171 * 4 3 2 29 29 H 1.09000 * 109.47177 * 179.85008 * 5 4 3 30 30 H 1.09000 * 109.47434 * 299.84664 * 5 4 3 31 31 H 1.09005 * 109.47053 * 59.85121 * 5 4 3 32 32 H 1.08993 * 109.47991 * 306.04460 * 6 3 2 33 33 H 1.09004 * 109.47086 * 186.04474 * 6 3 2 34 34 H 1.08998 * 109.47076 * 59.99676 * 7 6 3 35 35 H 1.09004 * 109.46764 * 299.99783 * 7 6 3 36 36 H 1.09007 * 109.47490 * 269.97918 * 11 10 9 37 37 H 1.09001 * 109.47766 * 29.97690 * 11 10 9 38 38 H 1.09006 * 109.47151 * 149.98301 * 11 10 9 39 39 H 0.96994 * 119.99784 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6077 2.0890 -1.2217 5 6 2.4054 1.5536 -2.4125 6 6 1.5678 2.1030 1.1992 7 6 2.2196 1.4866 2.4386 8 6 1.7565 2.2236 3.6688 9 7 0.7101 1.9083 4.3640 10 6 0.4324 2.6427 5.4085 11 6 -0.7520 2.3891 6.3049 12 6 1.3316 3.6773 5.6128 13 6 1.2876 4.6208 6.6467 14 1 0.4940 4.5835 7.3783 15 6 2.2700 5.6159 6.7290 16 7 3.2286 5.6642 5.8395 17 14 2.2116 6.8740 8.1086 18 1 2.2958 6.1776 9.4175 19 1 3.3548 7.8119 7.9719 20 1 0.9374 7.6330 8.0327 21 16 2.5364 3.5931 4.3295 22 1 -0.3634 -1.0273 0.0235 23 1 -0.3633 0.5341 0.8780 24 1 -0.3634 0.4934 -0.9016 25 1 1.8932 -0.5138 -0.8901 26 1 1.8934 -0.5139 0.8899 27 1 0.5438 1.9257 -1.3940 28 1 1.7976 3.1563 -1.1076 29 1 2.0977 2.0742 -3.3194 30 1 3.4690 1.7195 -2.2415 31 1 2.2175 0.4858 -2.5250 32 1 0.4838 2.0257 1.2822 33 1 1.8524 3.1525 1.1231 34 1 3.3036 1.5640 2.3556 35 1 1.9350 0.4371 2.5147 36 1 -1.6136 2.9448 5.9347 37 1 -0.9820 1.3236 6.3105 38 1 -0.5173 2.7155 7.3182 39 1 3.9090 6.3531 5.8968 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082421807.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:17 Heat of formation + Delta-G solvation = -10.230275 kcal Electronic energy + Delta-G solvation = -18258.925763 eV Core-core repulsion = 15519.105425 eV Total energy + Delta-G solvation = -2739.820338 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.82883 -39.18751 -36.15259 -33.99734 -32.26052 -31.51343 -29.82815 -29.02205 -25.81298 -25.31155 -24.31042 -22.16468 -20.60684 -20.53030 -18.84533 -17.62926 -17.21832 -16.99057 -16.44333 -15.48052 -15.29190 -15.15606 -14.65235 -14.20844 -14.08516 -13.81998 -13.59651 -13.45252 -13.36435 -13.17430 -13.13291 -12.92156 -12.62342 -12.51951 -12.33887 -12.23527 -12.16112 -11.99865 -11.72669 -11.46032 -11.27249 -11.19510 -9.74596 -9.67807 -9.22578 -8.98106 -8.82426 -6.47100 0.66747 1.37314 1.53002 1.53453 1.54296 1.99545 2.19151 2.35934 2.97941 3.11247 3.94066 4.01855 4.17999 4.29606 4.32846 4.43367 4.44551 4.57872 4.62309 4.67617 4.78233 4.81636 4.85793 4.91923 4.99188 5.04879 5.10404 5.12720 5.15326 5.16140 5.24174 5.30507 5.46019 5.50882 5.84083 6.07640 6.11685 6.23193 6.47350 6.49217 7.87691 8.01012 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.029422 B = 0.004599 C = 0.004145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.455275 B = 6087.234487 C = 6752.905732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.046 3.954 3 N -0.541 5.541 4 C 0.040 3.960 5 C -0.137 4.137 6 C 0.076 3.924 7 C 0.009 3.991 8 C -0.182 4.182 9 N -0.448 5.448 10 C -0.189 4.189 11 C -0.023 4.023 12 C -0.030 4.030 13 C -0.392 4.392 14 H 0.107 0.893 15 C 0.012 3.988 16 N -0.797 5.797 17 Si 1.012 2.988 18 H -0.254 1.254 19 H -0.262 1.262 20 H -0.255 1.255 21 S 0.105 5.895 22 H 0.072 0.928 23 H 0.035 0.965 24 H 0.062 0.938 25 H 0.094 0.906 26 H 0.068 0.932 27 H 0.040 0.960 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.023 0.977 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.042 0.958 37 H 0.048 0.952 38 H 0.059 0.941 39 H 0.308 0.692 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.265 -2.051 -7.964 8.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.081 4.081 3 N -0.265 5.265 4 C -0.088 4.088 5 C -0.195 4.195 6 C -0.053 4.053 7 C -0.032 4.032 8 C -0.452 4.452 9 N -0.161 5.161 10 C -0.323 4.323 11 C -0.082 4.082 12 C -0.153 4.153 13 C -0.429 4.429 14 H 0.125 0.875 15 C -0.208 4.208 16 N -0.423 5.423 17 Si 0.830 3.170 18 H -0.178 1.178 19 H -0.186 1.186 20 H -0.179 1.179 21 S 0.357 5.643 22 H 0.091 0.909 23 H 0.054 0.946 24 H 0.081 0.919 25 H 0.112 0.888 26 H 0.086 0.914 27 H 0.058 0.942 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.042 0.958 33 H 0.076 0.924 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.061 0.939 37 H 0.067 0.933 38 H 0.078 0.922 39 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 1.062 -1.940 -8.639 8.918 hybrid contribution -1.640 0.346 1.149 2.032 sum -0.578 -1.594 -7.490 7.680 Atomic orbital electron populations 1.22350 0.98305 1.02738 1.01239 1.22242 0.92995 0.89810 1.03101 1.62294 1.59610 1.02910 1.01672 1.22222 0.98124 0.98230 0.90183 1.21708 1.00308 1.01355 0.96089 1.21912 0.96793 0.97170 0.89400 1.19480 0.98837 0.97134 0.87716 1.26325 1.02842 1.08472 1.07608 1.65087 1.16212 1.29393 1.05364 1.20492 1.06539 1.01972 1.03272 1.19607 0.92698 0.99659 0.96234 1.23477 0.95723 0.98077 0.98043 1.19556 1.09058 1.06803 1.07453 0.87481 1.27251 0.92952 1.00427 1.00149 1.69037 1.10088 1.31164 1.32037 0.84753 0.79639 0.76093 0.76540 1.17823 1.18588 1.17883 1.83849 1.31066 1.26878 1.22531 0.90869 0.94556 0.91902 0.88771 0.91353 0.94222 0.91743 0.90962 0.92474 0.92166 0.95840 0.92420 0.91374 0.91905 0.93899 0.93327 0.92233 0.87859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.76 9.28 71.98 0.67 -4.09 16 2 C 0.05 1.19 5.70 86.30 0.49 1.68 16 3 N -0.54 -15.85 4.67 -896.23 -4.18 -20.03 16 4 C 0.04 0.98 5.55 86.31 0.48 1.46 16 5 C -0.14 -2.61 9.96 71.98 0.72 -1.89 16 6 C 0.08 2.77 4.71 86.31 0.41 3.18 16 7 C 0.01 0.38 5.71 29.85 0.17 0.55 16 8 C -0.18 -9.08 6.61 88.45 0.59 -8.49 16 9 N -0.45 -23.98 10.48 -176.31 -1.85 -25.82 16 10 C -0.19 -10.10 6.90 42.81 0.30 -9.81 16 11 C -0.02 -1.01 10.06 71.23 0.72 -0.29 16 12 C -0.03 -1.63 6.25 22.79 0.14 -1.49 16 13 C -0.39 -19.79 8.92 23.15 0.21 -19.58 16 14 H 0.11 5.02 6.95 -2.91 -0.02 4.99 16 15 C 0.01 0.53 5.50 85.28 0.47 1.00 16 16 N -0.80 -38.01 10.76 21.86 0.24 -37.78 16 17 Si 1.01 34.01 29.56 68.60 2.03 36.04 16 18 H -0.25 -8.29 7.11 99.48 0.71 -7.58 16 19 H -0.26 -8.26 7.11 99.48 0.71 -7.55 16 20 H -0.25 -8.32 7.11 99.48 0.71 -7.61 16 21 S 0.10 5.40 20.23 -56.49 -1.14 4.26 16 22 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 23 H 0.04 1.14 6.23 -2.39 -0.01 1.12 16 24 H 0.06 1.45 6.30 -2.38 -0.02 1.43 16 25 H 0.09 1.98 6.58 -2.39 -0.02 1.97 16 26 H 0.07 1.90 6.43 -2.39 -0.02 1.88 16 27 H 0.04 0.95 5.91 -2.38 -0.01 0.93 16 28 H 0.06 1.65 7.81 -2.39 -0.02 1.63 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.06 1.05 6.70 -2.38 -0.02 1.04 16 32 H 0.02 0.92 6.00 -2.39 -0.01 0.91 16 33 H 0.06 2.21 7.86 -2.39 -0.02 2.19 16 34 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 35 H 0.06 2.51 6.53 -2.39 -0.02 2.50 16 36 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 37 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.06 2.47 7.15 -2.38 -0.02 2.45 16 39 H 0.31 13.06 8.30 -92.71 -0.77 12.29 16 Total: -1.00 -59.71 319.78 1.48 -58.24 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: 1.04 Total: 22.87 kcal Atomic # 6 Polarization: -43.13 SS G_CDS: 5.35 Total: -37.78 kcal Atomic # 7 Polarization: -77.84 SS G_CDS: -5.80 Total: -83.63 kcal Atomic # 14 Polarization: 34.01 SS G_CDS: 2.03 Total: 36.04 kcal Atomic # 16 Polarization: 5.40 SS G_CDS: -1.14 Total: 4.26 kcal Total: -59.71 1.48 -58.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082421807.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.008 kcal (2) G-P(sol) polarization free energy of solvation -59.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds