Wall clock time and date at job start Mon Mar 30 2020 06:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50706 * 109.47061 * 2 1 4 4 N 1.30670 * 123.22275 * 90.02603 * 3 2 1 5 5 C 1.29526 * 117.63091 * 179.97438 * 4 3 2 6 6 C 1.50700 * 124.55696 * 179.97438 * 5 4 3 7 7 N 1.46897 * 109.46965 * 90.83542 * 6 5 4 8 8 C 1.46900 * 111.00358 * 164.72350 * 7 6 5 9 9 C 1.52998 * 109.47613 * 189.99783 * 8 7 6 10 10 C 1.46899 * 110.99894 * 288.67860 * 7 6 5 11 11 C 1.53000 * 109.47297 * 295.92192 * 10 7 6 12 12 S 1.70882 * 110.87613 * 0.24640 * 5 4 3 13 13 C 1.38585 * 123.22570 * 269.98328 * 3 2 1 14 14 C 1.40042 * 126.25534 * 0.03963 * 13 3 2 15 15 H 1.08003 * 120.00040 * 9.10357 * 14 13 3 16 16 C 1.40072 * 120.00038 * 189.09808 * 14 13 3 17 17 N 1.30862 * 120.00137 * 9.01515 * 16 14 13 18 18 Si 1.86800 * 120.00016 * 189.00842 * 16 14 13 19 19 H 1.48489 * 109.47252 * 94.97882 * 18 16 14 20 20 H 1.48499 * 109.47358 * 214.98070 * 18 16 14 21 21 H 1.48507 * 109.46925 * 334.97827 * 18 16 14 22 22 H 1.09001 * 109.46997 * 299.99956 * 1 2 3 23 23 H 1.09007 * 109.47187 * 59.99396 * 1 2 3 24 24 H 1.09000 * 109.47017 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46979 * 240.00601 * 2 1 3 26 26 H 1.08998 * 109.47314 * 120.00315 * 2 1 3 27 27 H 1.08997 * 109.47664 * 330.82866 * 6 5 4 28 28 H 1.09005 * 109.46824 * 210.83109 * 6 5 4 29 29 H 1.08997 * 109.47021 * 310.00339 * 8 7 6 30 30 H 1.09001 * 109.46738 * 69.99703 * 8 7 6 31 31 H 1.08992 * 109.47301 * 180.02562 * 9 8 7 32 32 H 1.08994 * 109.46902 * 300.00141 * 9 8 7 33 33 H 1.09001 * 109.47135 * 60.00162 * 9 8 7 34 34 H 1.09001 * 109.47112 * 55.92091 * 10 7 6 35 35 H 1.09000 * 109.47153 * 175.91978 * 10 7 6 36 36 H 1.09000 * 109.47304 * 180.16756 * 11 10 7 37 37 H 1.09010 * 109.46453 * 300.16599 * 11 10 7 38 38 H 1.09000 * 109.47113 * 60.16218 * 11 10 7 39 39 H 0.96995 * 120.00162 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2715 2.0957 1.0931 5 6 2.7016 3.3109 0.9669 6 6 3.0255 4.2270 2.1188 7 7 4.4414 4.0772 2.4804 8 6 4.8869 5.1862 3.3345 9 6 6.4086 5.1347 3.4850 10 6 4.6847 2.7821 3.1297 11 6 3.9193 2.7234 4.4532 12 16 2.8451 3.7380 -0.6815 13 6 2.2858 2.1367 -1.1593 14 6 2.1218 1.6740 -2.4709 15 1 1.6303 0.7297 -2.6529 16 6 2.5951 2.4360 -3.5467 17 7 3.3424 3.4872 -3.3253 18 14 2.1597 1.9516 -5.2974 19 1 0.9662 2.7161 -5.7403 20 1 3.3034 2.2562 -6.1943 21 1 1.8634 0.4973 -5.3495 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5140 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 2.4025 3.9685 2.9750 28 1 2.8322 5.2595 1.8274 29 1 4.5987 6.1337 2.8793 30 1 4.4215 5.0983 4.3162 31 1 6.7391 5.9573 4.1190 32 1 6.6967 4.1872 3.9401 33 1 6.8740 5.2226 2.5032 34 1 4.3437 1.9786 2.4768 35 1 5.7514 2.6665 3.3214 36 1 4.1022 1.7636 4.9364 37 1 4.2583 3.5288 5.1049 38 1 2.8523 2.8361 4.2612 39 1 3.6704 4.0147 -4.0702 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082425525.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:45 Heat of formation + Delta-G solvation = 9.628540 kcal Electronic energy + Delta-G solvation = -18703.420475 eV Core-core repulsion = 15964.461280 eV Total energy + Delta-G solvation = -2738.959195 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.27055 -37.24902 -34.18052 -32.35389 -30.97572 -29.99454 -28.87661 -26.28258 -24.27904 -23.41489 -22.83352 -20.69077 -19.22040 -18.61282 -16.89609 -15.90848 -15.55596 -15.22623 -15.08984 -13.99079 -13.81642 -13.25074 -12.92176 -12.83610 -12.74049 -12.45250 -11.96607 -11.86871 -11.81385 -11.53623 -11.47712 -11.38862 -11.05348 -10.92671 -10.78076 -10.68248 -10.53292 -10.40425 -10.12014 -9.97049 -9.72126 -9.09323 -7.87996 -7.68415 -7.58022 -7.18272 -6.80034 -4.49334 2.50922 2.92128 2.97300 3.05729 3.51484 3.68067 4.08399 4.14106 4.65925 5.05409 5.27837 5.46860 5.51619 5.68845 5.75519 5.75896 5.84217 5.92836 6.06706 6.10575 6.15587 6.20897 6.27154 6.34659 6.41010 6.43516 6.61954 6.70520 6.76574 6.78777 6.86569 6.99613 7.14107 7.42049 7.64659 7.70729 7.80135 8.00941 8.41820 8.42065 9.81075 9.84928 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.021852 B = 0.006128 C = 0.005071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.052166 B = 4567.841755 C = 5520.098580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.007 4.007 3 C -0.142 4.142 4 N -0.424 5.424 5 C -0.162 4.162 6 C 0.164 3.836 7 N -0.529 5.529 8 C 0.045 3.955 9 C -0.146 4.146 10 C 0.054 3.946 11 C -0.186 4.186 12 S 0.119 5.881 13 C 0.008 3.992 14 C -0.376 4.376 15 H 0.097 0.903 16 C 0.053 3.947 17 N -0.770 5.770 18 Si 0.929 3.071 19 H -0.265 1.265 20 H -0.273 1.273 21 H -0.258 1.258 22 H 0.044 0.956 23 H 0.050 0.950 24 H 0.036 0.964 25 H 0.056 0.944 26 H 0.046 0.954 27 H 0.039 0.961 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.031 0.969 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.062 0.938 34 H 0.087 0.913 35 H 0.062 0.938 36 H 0.052 0.948 37 H 0.047 0.953 38 H 0.060 0.940 39 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.335 1.546 4.936 5.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.047 4.047 3 C -0.277 4.277 4 N -0.137 5.137 5 C -0.431 4.431 6 C 0.035 3.965 7 N -0.253 5.253 8 C -0.083 4.083 9 C -0.203 4.203 10 C -0.074 4.074 11 C -0.244 4.244 12 S 0.372 5.628 13 C -0.115 4.115 14 C -0.413 4.413 15 H 0.115 0.885 16 C -0.169 4.169 17 N -0.396 5.396 18 Si 0.753 3.247 19 H -0.190 1.190 20 H -0.198 1.198 21 H -0.181 1.181 22 H 0.063 0.937 23 H 0.069 0.931 24 H 0.055 0.945 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.049 0.951 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.017 2.557 4.576 5.616 hybrid contribution -0.858 -1.033 -0.046 1.344 sum 1.159 1.524 4.530 4.918 Atomic orbital electron populations 1.21721 0.97372 0.99158 1.01366 1.19369 0.93679 0.91764 0.99852 1.19786 1.23220 0.98364 0.86332 1.64983 1.09637 1.05661 1.33430 1.25297 1.21511 0.97320 0.98967 1.20006 0.86855 0.96143 0.93530 1.62278 1.19881 1.01574 1.41548 1.22095 0.95849 0.94951 0.95423 1.21764 0.95718 1.00932 1.01918 1.22061 0.98801 0.92919 0.93603 1.22348 1.02016 1.00957 0.99118 1.83825 1.67011 1.14519 0.97458 1.23055 0.96913 0.94472 0.97100 1.19119 1.28663 1.04872 0.88664 0.88494 1.26210 0.93043 0.94484 1.03144 1.69227 1.22020 1.12922 1.35444 0.85900 0.79153 0.80400 0.79272 1.19021 1.19776 1.18120 0.93668 0.93056 0.94470 0.92550 0.93515 0.94312 0.91669 0.91411 0.95105 0.93043 0.92910 0.91915 0.89475 0.91933 0.92856 0.93359 0.92070 0.89303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.89 37.16 0.37 -2.29 16 2 C -0.01 -0.14 6.08 -27.88 -0.17 -0.31 16 3 C -0.14 -3.57 6.15 -82.96 -0.51 -4.08 16 4 N -0.42 -10.63 9.72 -7.08 -0.07 -10.70 16 5 C -0.16 -3.86 6.20 -13.25 -0.08 -3.94 16 6 C 0.16 3.28 5.42 -4.98 -0.03 3.26 16 7 N -0.53 -9.67 4.66 -236.08 -1.10 -10.77 16 8 C 0.04 0.66 5.43 -3.83 -0.02 0.64 16 9 C -0.15 -1.87 9.84 37.16 0.37 -1.51 16 10 C 0.05 0.96 5.69 -3.82 -0.02 0.94 16 11 C -0.19 -2.86 9.27 37.16 0.34 -2.52 16 12 S 0.12 2.99 20.44 -107.50 -2.20 0.79 16 13 C 0.01 0.21 6.19 -38.78 -0.24 -0.03 16 14 C -0.38 -9.36 8.85 -38.22 -0.34 -9.70 16 15 H 0.10 2.29 7.11 -52.48 -0.37 1.92 16 16 C 0.05 1.25 5.47 -17.28 -0.09 1.15 16 17 N -0.77 -18.61 10.98 55.56 0.61 -18.00 16 18 Si 0.93 17.38 29.57 -169.99 -5.03 12.36 16 19 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 20 H -0.27 -5.00 7.11 56.52 0.40 -4.60 16 21 H -0.26 -4.74 7.11 56.52 0.40 -4.34 16 22 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 23 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.06 1.19 7.27 -51.93 -0.38 0.81 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 27 H 0.04 0.77 5.95 -51.93 -0.31 0.46 16 28 H 0.06 1.23 7.82 -51.93 -0.41 0.83 16 29 H 0.07 0.96 7.87 -51.93 -0.41 0.55 16 30 H 0.03 0.43 5.99 -51.93 -0.31 0.12 16 31 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.05 0.67 6.56 -51.93 -0.34 0.33 16 33 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.09 1.85 6.78 -51.93 -0.35 1.50 16 35 H 0.06 1.01 6.48 -51.93 -0.34 0.68 16 36 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 37 H 0.05 0.66 6.27 -51.92 -0.33 0.34 16 38 H 0.06 1.04 6.29 -51.93 -0.33 0.71 16 39 H 0.29 6.42 8.30 -40.82 -0.34 6.08 16 LS Contribution 320.83 15.07 4.83 4.83 Total: -1.00 -27.00 320.83 -9.34 -36.34 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: -5.96 Total: 3.54 kcal Atomic # 6 Polarization: -17.97 SS G_CDS: -0.43 Total: -18.39 kcal Atomic # 7 Polarization: -38.91 SS G_CDS: -0.56 Total: -39.46 kcal Atomic # 14 Polarization: 17.38 SS G_CDS: -5.03 Total: 12.36 kcal Atomic # 16 Polarization: 2.99 SS G_CDS: -2.20 Total: 0.79 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -27.00 -9.34 -36.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082425525.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.966 kcal (2) G-P(sol) polarization free energy of solvation -27.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds