Wall clock time and date at job start Mon Mar 30 2020 06:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50706 * 109.47061 * 2 1 4 4 N 1.30670 * 123.22275 * 90.02603 * 3 2 1 5 5 C 1.29526 * 117.63091 * 179.97438 * 4 3 2 6 6 C 1.50700 * 124.55696 * 179.97438 * 5 4 3 7 7 N 1.46897 * 109.46965 * 90.83542 * 6 5 4 8 8 C 1.46900 * 111.00358 * 164.72350 * 7 6 5 9 9 C 1.52998 * 109.47613 * 189.99783 * 8 7 6 10 10 C 1.46899 * 110.99894 * 288.67860 * 7 6 5 11 11 C 1.53000 * 109.47297 * 295.92192 * 10 7 6 12 12 S 1.70882 * 110.87613 * 0.24640 * 5 4 3 13 13 C 1.38585 * 123.22570 * 269.98328 * 3 2 1 14 14 C 1.40042 * 126.25534 * 0.03963 * 13 3 2 15 15 H 1.08003 * 120.00040 * 9.10357 * 14 13 3 16 16 C 1.40072 * 120.00038 * 189.09808 * 14 13 3 17 17 N 1.30862 * 120.00137 * 9.01515 * 16 14 13 18 18 Si 1.86800 * 120.00016 * 189.00842 * 16 14 13 19 19 H 1.48489 * 109.47252 * 94.97882 * 18 16 14 20 20 H 1.48499 * 109.47358 * 214.98070 * 18 16 14 21 21 H 1.48507 * 109.46925 * 334.97827 * 18 16 14 22 22 H 1.09001 * 109.46997 * 299.99956 * 1 2 3 23 23 H 1.09007 * 109.47187 * 59.99396 * 1 2 3 24 24 H 1.09000 * 109.47017 * 179.97438 * 1 2 3 25 25 H 1.09000 * 109.46979 * 240.00601 * 2 1 3 26 26 H 1.08998 * 109.47314 * 120.00315 * 2 1 3 27 27 H 1.08997 * 109.47664 * 330.82866 * 6 5 4 28 28 H 1.09005 * 109.46824 * 210.83109 * 6 5 4 29 29 H 1.08997 * 109.47021 * 310.00339 * 8 7 6 30 30 H 1.09001 * 109.46738 * 69.99703 * 8 7 6 31 31 H 1.08992 * 109.47301 * 180.02562 * 9 8 7 32 32 H 1.08994 * 109.46902 * 300.00141 * 9 8 7 33 33 H 1.09001 * 109.47135 * 60.00162 * 9 8 7 34 34 H 1.09001 * 109.47112 * 55.92091 * 10 7 6 35 35 H 1.09000 * 109.47153 * 175.91978 * 10 7 6 36 36 H 1.09000 * 109.47304 * 180.16756 * 11 10 7 37 37 H 1.09010 * 109.46453 * 300.16599 * 11 10 7 38 38 H 1.09000 * 109.47113 * 60.16218 * 11 10 7 39 39 H 0.96995 * 120.00162 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2715 2.0957 1.0931 5 6 2.7016 3.3109 0.9669 6 6 3.0255 4.2270 2.1188 7 7 4.4414 4.0772 2.4804 8 6 4.8869 5.1862 3.3345 9 6 6.4086 5.1347 3.4850 10 6 4.6847 2.7821 3.1297 11 6 3.9193 2.7234 4.4532 12 16 2.8451 3.7380 -0.6815 13 6 2.2858 2.1367 -1.1593 14 6 2.1218 1.6740 -2.4709 15 1 1.6303 0.7297 -2.6529 16 6 2.5951 2.4360 -3.5467 17 7 3.3424 3.4872 -3.3253 18 14 2.1597 1.9516 -5.2974 19 1 0.9662 2.7161 -5.7403 20 1 3.3034 2.2562 -6.1943 21 1 1.8634 0.4973 -5.3495 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5140 -0.8900 24 1 -0.3633 -1.0277 -0.0005 25 1 1.8933 -0.5137 -0.8900 26 1 1.8934 -0.5139 0.8899 27 1 2.4025 3.9685 2.9750 28 1 2.8322 5.2595 1.8274 29 1 4.5987 6.1337 2.8793 30 1 4.4215 5.0983 4.3162 31 1 6.7391 5.9573 4.1190 32 1 6.6967 4.1872 3.9401 33 1 6.8740 5.2226 2.5032 34 1 4.3437 1.9786 2.4768 35 1 5.7514 2.6665 3.3214 36 1 4.1022 1.7636 4.9364 37 1 4.2583 3.5288 5.1049 38 1 2.8523 2.8361 4.2612 39 1 3.6704 4.0147 -4.0702 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082425525.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:45 Heat of formation + Delta-G solvation = -5.878620 kcal Electronic energy + Delta-G solvation = -18704.092916 eV Core-core repulsion = 15964.461280 eV Total energy + Delta-G solvation = -2739.631636 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.92207 -38.84525 -35.99412 -34.03420 -32.20465 -31.52015 -30.63121 -27.83842 -25.92940 -24.81910 -24.51919 -22.29466 -20.64500 -20.47149 -18.74828 -17.63000 -16.94509 -16.80029 -16.66034 -15.57548 -15.22410 -14.82885 -14.57865 -14.38448 -14.28600 -13.84869 -13.59987 -13.40726 -13.07199 -13.04827 -13.01782 -12.79162 -12.60643 -12.40127 -12.25493 -12.23131 -11.97867 -11.90929 -11.68411 -11.45297 -11.37524 -10.99150 -9.69960 -9.60360 -9.12354 -8.98690 -8.65843 -6.38291 0.70381 1.38144 1.51858 1.54926 1.60749 2.05604 2.22740 2.39011 3.07563 3.32283 4.05052 4.08704 4.16886 4.34697 4.41408 4.46145 4.48381 4.56532 4.62556 4.70302 4.73554 4.78485 4.86074 4.99074 5.05326 5.09056 5.12203 5.17148 5.21047 5.27694 5.28216 5.47336 5.50520 5.60879 5.91040 6.12861 6.22095 6.38484 6.55037 6.56436 7.94023 8.06887 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.021852 B = 0.006128 C = 0.005071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.052166 B = 4567.841755 C = 5520.098580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.006 4.006 3 C -0.168 4.168 4 N -0.438 5.438 5 C -0.159 4.159 6 C 0.170 3.830 7 N -0.546 5.546 8 C 0.044 3.956 9 C -0.140 4.140 10 C 0.058 3.942 11 C -0.174 4.174 12 S 0.089 5.911 13 C -0.021 4.021 14 C -0.398 4.398 15 H 0.104 0.896 16 C 0.016 3.984 17 N -0.797 5.797 18 Si 1.004 2.996 19 H -0.260 1.260 20 H -0.264 1.264 21 H -0.251 1.251 22 H 0.035 0.965 23 H 0.040 0.960 24 H 0.071 0.929 25 H 0.056 0.944 26 H 0.048 0.952 27 H 0.042 0.958 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.045 0.955 31 H 0.078 0.922 32 H 0.053 0.947 33 H 0.048 0.952 34 H 0.045 0.955 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.041 0.959 39 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.500 1.550 5.037 5.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.045 4.045 3 C -0.302 4.302 4 N -0.151 5.151 5 C -0.429 4.429 6 C 0.040 3.960 7 N -0.270 5.270 8 C -0.083 4.083 9 C -0.198 4.198 10 C -0.070 4.070 11 C -0.233 4.233 12 S 0.341 5.659 13 C -0.144 4.144 14 C -0.435 4.435 15 H 0.121 0.879 16 C -0.204 4.204 17 N -0.423 5.423 18 Si 0.823 3.177 19 H -0.184 1.184 20 H -0.188 1.188 21 H -0.174 1.174 22 H 0.054 0.946 23 H 0.059 0.941 24 H 0.090 0.910 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.060 0.940 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.063 0.937 31 H 0.097 0.903 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.096 0.904 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.060 0.940 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.189 2.556 4.697 5.778 hybrid contribution -0.844 -0.987 -0.024 1.299 sum 1.344 1.569 4.673 5.110 Atomic orbital electron populations 1.21598 0.95415 1.01066 1.00363 1.19419 0.95336 0.89915 0.99880 1.20354 1.23790 0.99875 0.86219 1.65066 1.10367 1.06160 1.33483 1.25945 1.20188 0.97411 0.99370 1.19974 0.88276 0.95526 0.92260 1.62193 1.18484 1.02950 1.43401 1.22212 0.97120 0.93619 0.95389 1.21731 0.94077 1.02178 1.01767 1.21957 0.99838 0.91476 0.93755 1.22224 1.00346 1.02507 0.98185 1.83717 1.67960 1.15176 0.99006 1.23413 0.97946 0.94870 0.98186 1.19440 1.29416 1.05681 0.88996 0.87866 1.27175 0.92167 0.93962 1.07089 1.69276 1.22216 1.13625 1.37203 0.84812 0.79077 0.80281 0.73550 1.18423 1.18827 1.17439 0.94575 0.94052 0.91037 0.92493 0.93332 0.94050 0.90864 0.90971 0.93675 0.90301 0.92756 0.93267 0.93620 0.90404 0.91705 0.91143 0.93962 0.88337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.79 9.89 71.98 0.71 -4.07 16 2 C -0.01 -0.24 6.08 29.85 0.18 -0.06 16 3 C -0.17 -8.70 6.15 42.82 0.26 -8.43 16 4 N -0.44 -22.52 9.72 -176.30 -1.71 -24.24 16 5 C -0.16 -7.76 6.20 88.45 0.55 -7.21 16 6 C 0.17 6.80 5.42 85.56 0.46 7.26 16 7 N -0.55 -19.65 4.66 -900.81 -4.20 -23.85 16 8 C 0.04 1.20 5.43 86.30 0.47 1.67 16 9 C -0.14 -3.27 9.84 71.98 0.71 -2.56 16 10 C 0.06 2.02 5.69 86.30 0.49 2.51 16 11 C -0.17 -5.11 9.27 71.98 0.67 -4.44 16 12 S 0.09 4.60 20.44 -56.49 -1.15 3.44 16 13 C -0.02 -1.13 6.19 22.79 0.14 -0.99 16 14 C -0.40 -20.13 8.85 23.15 0.20 -19.93 16 15 H 0.10 4.91 7.11 -2.91 -0.02 4.89 16 16 C 0.02 0.73 5.47 85.28 0.47 1.19 16 17 N -0.80 -38.83 10.98 21.86 0.24 -38.59 16 18 Si 1.00 34.83 29.57 68.60 2.03 36.85 16 19 H -0.26 -8.75 7.11 99.48 0.71 -8.04 16 20 H -0.26 -8.72 7.11 99.48 0.71 -8.01 16 21 H -0.25 -8.39 7.11 99.48 0.71 -7.68 16 22 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 23 H 0.04 1.61 8.14 -2.38 -0.02 1.60 16 24 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 25 H 0.06 2.42 7.27 -2.39 -0.02 2.40 16 26 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 27 H 0.04 1.63 5.95 -2.39 -0.01 1.62 16 28 H 0.07 2.76 7.82 -2.38 -0.02 2.74 16 29 H 0.07 1.91 7.87 -2.39 -0.02 1.89 16 30 H 0.05 1.12 5.99 -2.39 -0.01 1.11 16 31 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.05 1.25 6.56 -2.39 -0.02 1.23 16 33 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.05 1.98 6.78 -2.39 -0.02 1.96 16 35 H 0.08 2.44 6.48 -2.39 -0.02 2.42 16 36 H 0.06 1.73 8.14 -2.39 -0.02 1.72 16 37 H 0.07 1.75 6.27 -2.38 -0.01 1.73 16 38 H 0.04 1.40 6.29 -2.39 -0.02 1.38 16 39 H 0.30 13.22 8.30 -92.71 -0.77 12.45 16 Total: -1.00 -59.36 320.83 1.55 -57.81 By element: Atomic # 1 Polarization: 22.60 SS G_CDS: 1.03 Total: 23.63 kcal Atomic # 6 Polarization: -40.38 SS G_CDS: 5.32 Total: -35.06 kcal Atomic # 7 Polarization: -81.00 SS G_CDS: -5.67 Total: -86.67 kcal Atomic # 14 Polarization: 34.83 SS G_CDS: 2.03 Total: 36.85 kcal Atomic # 16 Polarization: 4.60 SS G_CDS: -1.15 Total: 3.44 kcal Total: -59.36 1.55 -57.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082425525.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.932 kcal (2) G-P(sol) polarization free energy of solvation -59.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds