Wall clock time and date at job start Mon Mar 30 2020 06:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47189 * 2 1 4 4 C 1.50696 * 109.47423 * 179.97438 * 3 2 1 5 5 N 1.30454 * 122.56828 * 269.71154 * 4 3 2 6 6 C 1.30652 * 117.51184 * 180.26638 * 5 4 3 7 7 N 1.37610 * 125.12812 * 180.02562 * 6 5 4 8 8 C 1.46506 * 119.99700 * 180.02562 * 7 6 5 9 9 C 1.52993 * 109.47635 * 89.99444 * 8 7 6 10 10 C 1.46500 * 120.00320 * 359.97438 * 7 6 5 11 11 C 1.53004 * 109.46665 * 90.00712 * 10 7 6 12 12 S 1.76079 * 109.73934 * 359.97438 * 6 5 4 13 13 C 1.38465 * 122.56648 * 89.99721 * 4 3 2 14 14 C 1.39913 * 126.07541 * 359.75435 * 13 4 3 15 15 H 1.07999 * 119.99845 * 0.02562 * 14 13 4 16 16 C 1.39903 * 119.99746 * 179.97438 * 14 13 4 17 17 N 1.31001 * 120.00350 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00035 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47335 * 89.99792 * 18 16 14 20 20 H 1.48495 * 109.47540 * 209.99983 * 18 16 14 21 21 H 1.48504 * 109.47028 * 330.00252 * 18 16 14 22 22 H 1.08992 * 109.47095 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47122 * 300.00563 * 1 2 3 24 24 H 1.08996 * 109.46829 * 60.00108 * 1 2 3 25 25 H 1.09001 * 109.47345 * 240.00155 * 2 1 3 26 26 H 1.08996 * 109.46829 * 119.99892 * 2 1 3 27 27 H 1.09006 * 109.47290 * 59.99694 * 3 2 1 28 28 H 1.09008 * 109.47298 * 300.00095 * 3 2 1 29 29 H 1.09001 * 109.46688 * 209.99359 * 8 7 6 30 30 H 1.08995 * 109.46993 * 329.99125 * 8 7 6 31 31 H 1.09008 * 109.47355 * 59.99549 * 9 8 7 32 32 H 1.08996 * 109.47346 * 179.97438 * 9 8 7 33 33 H 1.09002 * 109.47404 * 300.00385 * 9 8 7 34 34 H 1.09000 * 109.47352 * 210.00187 * 10 7 6 35 35 H 1.08998 * 109.46898 * 330.00896 * 10 7 6 36 36 H 1.09005 * 109.47245 * 299.99965 * 11 10 7 37 37 H 1.08995 * 109.47134 * 59.99683 * 11 10 7 38 38 H 1.09001 * 109.46823 * 180.02562 * 11 10 7 39 39 H 0.96996 * 120.00460 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.2488 1.4483 1.1003 6 6 5.5503 1.4531 0.9857 7 7 6.4378 1.4589 2.0374 8 6 7.8798 1.4646 1.7788 9 6 8.3757 2.9089 1.6858 10 6 5.9406 1.4606 3.4154 11 6 5.7729 0.0187 3.8988 12 16 5.9973 1.4496 -0.7174 13 6 4.2928 1.4423 -1.1660 14 6 3.7838 1.4372 -2.4692 15 1 2.7162 1.4333 -2.6319 16 6 4.6580 1.4382 -3.5616 17 7 5.9530 1.4434 -3.3642 18 14 3.9785 1.4321 -5.3016 19 1 3.7931 2.8306 -5.7656 20 1 4.9304 0.7338 -6.2023 21 1 2.6715 0.7272 -5.3201 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6767 1.9564 0.8900 28 1 1.6767 1.9564 -0.8900 29 1 8.3966 0.9546 2.5918 30 1 8.0826 0.9497 0.8398 31 1 8.1729 3.4239 2.6249 32 1 9.4487 2.9131 1.4939 33 1 7.8589 3.4190 0.8729 34 1 6.6526 1.9787 4.0579 35 1 4.9783 1.9710 3.4538 36 1 5.0609 -0.4995 3.2563 37 1 6.7353 -0.4917 3.8602 38 1 5.4026 0.0199 4.9240 39 1 6.5591 1.4445 -4.1215 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082429047.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:40 Heat of formation + Delta-G solvation = 4.489522 kcal Electronic energy + Delta-G solvation = -18741.595869 eV Core-core repulsion = 16002.413829 eV Total energy + Delta-G solvation = -2739.182039 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -37.89136 -36.43369 -33.88298 -33.51528 -31.53391 -29.74310 -28.22879 -26.86422 -23.91843 -23.15889 -22.67254 -20.96739 -19.49925 -18.42397 -17.08964 -15.93446 -15.78423 -14.66472 -14.41206 -13.90391 -13.61280 -13.41086 -13.13438 -12.98918 -12.62185 -12.49254 -12.03558 -11.74992 -11.74217 -11.51637 -11.39620 -11.35605 -11.23555 -10.79908 -10.73772 -10.58862 -10.41781 -10.38612 -10.27381 -9.79819 -9.71141 -9.04897 -8.40068 -7.73877 -7.35885 -6.87099 -6.43670 -4.15243 2.65608 2.97063 3.02307 3.16825 3.18000 3.73842 3.96205 4.19188 4.40851 5.13635 5.39530 5.59224 5.67249 5.76495 5.80669 5.82974 5.91253 5.95149 5.98410 6.07264 6.17848 6.26368 6.36638 6.48079 6.52908 6.62423 6.65027 6.70965 6.74482 6.80856 6.94870 7.03953 7.24557 7.45120 7.74748 7.94761 8.13349 8.36519 8.59356 8.79158 9.96077 9.99285 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.015374 B = 0.007913 C = 0.005468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.864142 B = 3537.622521 C = 5119.475968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.115 4.115 3 C 0.002 3.998 4 C -0.127 4.127 5 N -0.490 5.490 6 C 0.143 3.857 7 N -0.596 5.596 8 C 0.139 3.861 9 C -0.170 4.170 10 C 0.144 3.856 11 C -0.163 4.163 12 S 0.089 5.911 13 C -0.007 4.007 14 C -0.382 4.382 15 H 0.095 0.905 16 C 0.050 3.950 17 N -0.796 5.796 18 Si 0.930 3.070 19 H -0.267 1.267 20 H -0.275 1.275 21 H -0.259 1.259 22 H 0.043 0.957 23 H 0.046 0.954 24 H 0.049 0.951 25 H 0.059 0.941 26 H 0.051 0.949 27 H 0.044 0.956 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.049 0.951 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.044 0.956 38 H 0.049 0.951 39 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.351 -0.569 4.423 4.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.038 4.038 4 C -0.258 4.258 5 N -0.209 5.209 6 C -0.220 4.220 7 N -0.320 5.320 8 C 0.014 3.986 9 C -0.230 4.230 10 C 0.018 3.982 11 C -0.223 4.223 12 S 0.337 5.663 13 C -0.130 4.130 14 C -0.419 4.419 15 H 0.112 0.888 16 C -0.168 4.168 17 N -0.424 5.424 18 Si 0.754 3.246 19 H -0.192 1.192 20 H -0.200 1.200 21 H -0.183 1.183 22 H 0.062 0.938 23 H 0.065 0.935 24 H 0.068 0.932 25 H 0.077 0.923 26 H 0.070 0.930 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.368 -0.569 4.378 5.010 hybrid contribution -1.012 -0.042 -0.807 1.295 sum 1.357 -0.611 3.571 3.868 Atomic orbital electron populations 1.21795 0.97458 1.00326 1.00998 1.21495 0.93480 0.98757 1.01545 1.19424 0.90153 0.94676 0.99589 1.19260 0.94658 1.26198 0.85641 1.65122 1.03487 1.19422 1.32904 1.24037 0.89958 1.15246 0.92768 1.44750 1.01921 1.83795 1.01568 1.21074 0.80655 0.95991 1.00877 1.22264 1.00148 0.98452 1.02105 1.20961 0.99348 0.95503 0.82420 1.22169 1.01211 0.98915 0.99967 1.85113 1.09110 1.77380 0.94666 1.22587 0.92374 1.01085 0.96963 1.18926 0.95093 1.39468 0.88396 0.88753 1.26065 0.94544 0.93394 1.02790 1.68874 1.03101 1.36243 1.34209 0.85898 0.79772 0.79380 0.79535 1.19240 1.20022 1.18323 0.93829 0.93477 0.93196 0.92258 0.92987 0.93709 0.92734 0.91982 0.91433 0.93193 0.92664 0.91993 0.93048 0.90971 0.92257 0.93715 0.93219 0.89536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.91 37.16 0.37 -1.97 16 2 C -0.11 -2.25 5.92 -26.73 -0.16 -2.41 16 3 C 0.00 0.04 5.34 -27.89 -0.15 -0.11 16 4 C -0.13 -3.24 6.10 -83.10 -0.51 -3.75 16 5 N -0.49 -12.43 9.72 -9.32 -0.09 -12.53 16 6 C 0.14 3.42 7.90 -87.85 -0.69 2.73 16 7 N -0.60 -11.81 2.55 -174.46 -0.44 -12.25 16 8 C 0.14 2.31 6.11 -4.04 -0.02 2.28 16 9 C -0.17 -2.58 10.24 37.15 0.38 -2.20 16 10 C 0.14 2.49 6.24 -4.04 -0.03 2.47 16 11 C -0.16 -2.59 10.24 37.16 0.38 -2.21 16 12 S 0.09 2.22 19.00 -107.50 -2.04 0.18 16 13 C -0.01 -0.18 6.23 -38.87 -0.24 -0.42 16 14 C -0.38 -9.77 8.88 -38.33 -0.34 -10.11 16 15 H 0.09 2.30 6.86 -52.49 -0.36 1.94 16 16 C 0.05 1.20 5.50 -17.28 -0.09 1.10 16 17 N -0.80 -19.60 10.74 55.55 0.60 -19.01 16 18 Si 0.93 18.09 29.56 -169.99 -5.03 13.07 16 19 H -0.27 -5.15 7.11 56.52 0.40 -4.74 16 20 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 21 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 22 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 26 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 27 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.05 1.17 7.06 -51.92 -0.37 0.81 16 29 H 0.06 0.87 8.07 -51.93 -0.42 0.45 16 30 H 0.07 1.20 7.05 -51.93 -0.37 0.84 16 31 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.05 0.75 8.07 -51.93 -0.42 0.33 16 35 H 0.07 1.39 7.61 -51.93 -0.39 0.99 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.29 6.55 8.30 -40.82 -0.34 6.21 16 LS Contribution 332.21 15.07 5.01 5.01 Total: -1.00 -27.91 332.21 -9.64 -37.55 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -6.53 Total: 2.57 kcal Atomic # 6 Polarization: -13.49 SS G_CDS: -1.11 Total: -14.60 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: 0.06 Total: -43.78 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.07 kcal Atomic # 16 Polarization: 2.22 SS G_CDS: -2.04 Total: 0.18 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.91 -9.64 -37.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082429047.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.044 kcal (2) G-P(sol) polarization free energy of solvation -27.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.555 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.490 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds