Wall clock time and date at job start Mon Mar 30 2020 06:31:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47189 * 2 1 4 4 C 1.50696 * 109.47423 * 179.97438 * 3 2 1 5 5 N 1.30454 * 122.56828 * 269.71154 * 4 3 2 6 6 C 1.30652 * 117.51184 * 180.26638 * 5 4 3 7 7 N 1.37610 * 125.12812 * 180.02562 * 6 5 4 8 8 C 1.46506 * 119.99700 * 180.02562 * 7 6 5 9 9 C 1.52993 * 109.47635 * 89.99444 * 8 7 6 10 10 C 1.46500 * 120.00320 * 359.97438 * 7 6 5 11 11 C 1.53004 * 109.46665 * 90.00712 * 10 7 6 12 12 S 1.76079 * 109.73934 * 359.97438 * 6 5 4 13 13 C 1.38465 * 122.56648 * 89.99721 * 4 3 2 14 14 C 1.39913 * 126.07541 * 359.75435 * 13 4 3 15 15 H 1.07999 * 119.99845 * 0.02562 * 14 13 4 16 16 C 1.39903 * 119.99746 * 179.97438 * 14 13 4 17 17 N 1.31001 * 120.00350 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00035 * 180.02562 * 16 14 13 19 19 H 1.48507 * 109.47335 * 89.99792 * 18 16 14 20 20 H 1.48495 * 109.47540 * 209.99983 * 18 16 14 21 21 H 1.48504 * 109.47028 * 330.00252 * 18 16 14 22 22 H 1.08992 * 109.47095 * 180.02562 * 1 2 3 23 23 H 1.08997 * 109.47122 * 300.00563 * 1 2 3 24 24 H 1.08996 * 109.46829 * 60.00108 * 1 2 3 25 25 H 1.09001 * 109.47345 * 240.00155 * 2 1 3 26 26 H 1.08996 * 109.46829 * 119.99892 * 2 1 3 27 27 H 1.09006 * 109.47290 * 59.99694 * 3 2 1 28 28 H 1.09008 * 109.47298 * 300.00095 * 3 2 1 29 29 H 1.09001 * 109.46688 * 209.99359 * 8 7 6 30 30 H 1.08995 * 109.46993 * 329.99125 * 8 7 6 31 31 H 1.09008 * 109.47355 * 59.99549 * 9 8 7 32 32 H 1.08996 * 109.47346 * 179.97438 * 9 8 7 33 33 H 1.09002 * 109.47404 * 300.00385 * 9 8 7 34 34 H 1.09000 * 109.47352 * 210.00187 * 10 7 6 35 35 H 1.08998 * 109.46898 * 330.00896 * 10 7 6 36 36 H 1.09005 * 109.47245 * 299.99965 * 11 10 7 37 37 H 1.08995 * 109.47134 * 59.99683 * 11 10 7 38 38 H 1.09001 * 109.46823 * 180.02562 * 11 10 7 39 39 H 0.96996 * 120.00460 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.2488 1.4483 1.1003 6 6 5.5503 1.4531 0.9857 7 7 6.4378 1.4589 2.0374 8 6 7.8798 1.4646 1.7788 9 6 8.3757 2.9089 1.6858 10 6 5.9406 1.4606 3.4154 11 6 5.7729 0.0187 3.8988 12 16 5.9973 1.4496 -0.7174 13 6 4.2928 1.4423 -1.1660 14 6 3.7838 1.4372 -2.4692 15 1 2.7162 1.4333 -2.6319 16 6 4.6580 1.4382 -3.5616 17 7 5.9530 1.4434 -3.3642 18 14 3.9785 1.4321 -5.3016 19 1 3.7931 2.8306 -5.7656 20 1 4.9304 0.7338 -6.2023 21 1 2.6715 0.7272 -5.3201 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.6767 1.9564 0.8900 28 1 1.6767 1.9564 -0.8900 29 1 8.3966 0.9546 2.5918 30 1 8.0826 0.9497 0.8398 31 1 8.1729 3.4239 2.6249 32 1 9.4487 2.9131 1.4939 33 1 7.8589 3.4190 0.8729 34 1 6.6526 1.9787 4.0579 35 1 4.9783 1.9710 3.4538 36 1 5.0609 -0.4995 3.2563 37 1 6.7353 -0.4917 3.8602 38 1 5.4026 0.0199 4.9240 39 1 6.5591 1.4445 -4.1215 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082429047.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:40 Heat of formation + Delta-G solvation = -8.756345 kcal Electronic energy + Delta-G solvation = -18742.170253 eV Core-core repulsion = 16002.413829 eV Total energy + Delta-G solvation = -2739.756423 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.68117 -38.03506 -35.70513 -35.11295 -32.85699 -31.46524 -29.84163 -28.46096 -25.66894 -24.62044 -24.26037 -22.51510 -21.10727 -20.27960 -18.87333 -17.66226 -17.49118 -16.27483 -15.98165 -15.43673 -15.19938 -14.96248 -14.60159 -14.46575 -14.16878 -14.09877 -13.49392 -13.38394 -13.29067 -13.02402 -12.95800 -12.82060 -12.58759 -12.42541 -12.32285 -12.00474 -11.90814 -11.87723 -11.74797 -11.50815 -11.39717 -10.93572 -10.14236 -9.64481 -9.25994 -8.68445 -8.26853 -6.03092 0.86082 1.30922 1.38578 1.51971 1.55458 1.94221 2.20813 2.54880 2.63237 3.25108 4.05979 4.24831 4.26974 4.35119 4.37075 4.48032 4.58503 4.61030 4.66909 4.70538 4.84979 4.91753 4.97956 5.01571 5.07253 5.11332 5.16067 5.21113 5.24003 5.34365 5.35712 5.44008 5.59578 5.66756 5.93370 6.13980 6.46455 6.56634 6.73383 7.00844 8.08106 8.19214 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.015374 B = 0.007913 C = 0.005468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1820.864142 B = 3537.622521 C = 5119.475968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.105 4.105 3 C 0.005 3.995 4 C -0.147 4.147 5 N -0.515 5.515 6 C 0.154 3.846 7 N -0.598 5.598 8 C 0.131 3.869 9 C -0.162 4.162 10 C 0.140 3.860 11 C -0.153 4.153 12 S 0.070 5.930 13 C -0.044 4.044 14 C -0.412 4.412 15 H 0.096 0.904 16 C 0.011 3.989 17 N -0.823 5.823 18 Si 1.001 2.999 19 H -0.261 1.261 20 H -0.266 1.266 21 H -0.255 1.255 22 H 0.062 0.938 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.040 0.960 26 H 0.037 0.963 27 H 0.045 0.955 28 H 0.053 0.947 29 H 0.099 0.901 30 H 0.050 0.950 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.028 0.972 34 H 0.089 0.911 35 H 0.047 0.953 36 H 0.021 0.979 37 H 0.059 0.941 38 H 0.077 0.923 39 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.634 -0.724 4.989 5.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.143 4.143 3 C -0.035 4.035 4 C -0.276 4.276 5 N -0.236 5.236 6 C -0.211 4.211 7 N -0.322 5.322 8 C 0.008 3.992 9 C -0.221 4.221 10 C 0.014 3.986 11 C -0.212 4.212 12 S 0.318 5.682 13 C -0.167 4.167 14 C -0.448 4.448 15 H 0.114 0.886 16 C -0.203 4.203 17 N -0.452 5.452 18 Si 0.821 3.179 19 H -0.186 1.186 20 H -0.190 1.190 21 H -0.179 1.179 22 H 0.081 0.919 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.059 0.941 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.117 0.883 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.047 0.953 34 H 0.107 0.893 35 H 0.066 0.934 36 H 0.041 0.959 37 H 0.078 0.922 38 H 0.096 0.904 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.668 -0.723 4.973 5.689 hybrid contribution -0.974 0.017 -0.819 1.273 sum 1.694 -0.706 4.154 4.541 Atomic orbital electron populations 1.21712 0.94003 1.01954 1.01974 1.21357 0.96410 0.96670 0.99909 1.19449 0.88403 0.96203 0.99424 1.19828 0.96300 1.25886 0.85593 1.65228 1.04064 1.21399 1.32867 1.24478 0.90265 1.12814 0.93564 1.45199 1.02713 1.82726 1.01601 1.21347 0.79054 0.97275 1.01526 1.22171 1.01503 0.96929 1.01461 1.21151 0.99202 0.96677 0.81521 1.22057 1.01085 0.97387 1.00657 1.84944 1.09196 1.78068 0.95963 1.22947 0.93068 1.02757 0.97935 1.19162 0.95581 1.41127 0.88900 0.88597 1.26981 0.94599 0.92227 1.06536 1.68923 1.04184 1.36383 1.35674 0.84852 0.79234 0.79599 0.74180 1.18602 1.19018 1.17853 0.91885 0.92352 0.92359 0.94073 0.94377 0.93602 0.92852 0.88269 0.93136 0.91920 0.89779 0.95278 0.89278 0.93422 0.95921 0.92239 0.90409 0.88764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.19 9.91 71.98 0.71 -3.48 16 2 C -0.11 -4.20 5.92 30.60 0.18 -4.01 16 3 C 0.01 0.24 5.34 29.85 0.16 0.39 16 4 C -0.15 -7.76 6.10 42.82 0.26 -7.50 16 5 N -0.51 -26.93 9.72 -183.39 -1.78 -28.71 16 6 C 0.15 7.52 7.90 179.38 1.42 8.94 16 7 N -0.60 -23.27 2.55 -705.87 -1.80 -25.07 16 8 C 0.13 4.14 6.11 86.38 0.53 4.67 16 9 C -0.16 -4.60 10.24 71.98 0.74 -3.86 16 10 C 0.14 4.60 6.24 86.38 0.54 5.14 16 11 C -0.15 -4.55 10.24 71.98 0.74 -3.82 16 12 S 0.07 3.64 19.00 -56.49 -1.07 2.56 16 13 C -0.04 -2.43 6.23 22.73 0.14 -2.28 16 14 C -0.41 -21.70 8.88 23.08 0.20 -21.50 16 15 H 0.10 4.82 6.86 -2.91 -0.02 4.80 16 16 C 0.01 0.55 5.50 85.22 0.47 1.02 16 17 N -0.82 -41.32 10.74 21.83 0.23 -41.08 16 18 Si 1.00 36.96 29.56 68.60 2.03 38.99 16 19 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 20 H -0.27 -9.32 7.11 99.48 0.71 -8.61 16 21 H -0.25 -9.14 7.11 99.48 0.71 -8.43 16 22 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 23 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 24 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.04 1.58 8.14 -2.39 -0.02 1.57 16 27 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 28 H 0.05 2.36 7.06 -2.38 -0.02 2.34 16 29 H 0.10 2.42 8.07 -2.39 -0.02 2.40 16 30 H 0.05 1.78 7.05 -2.39 -0.02 1.76 16 31 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 32 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 33 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.09 2.28 8.07 -2.39 -0.02 2.26 16 35 H 0.05 1.81 7.61 -2.39 -0.02 1.79 16 36 H 0.02 0.82 8.14 -2.38 -0.02 0.80 16 37 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.30 13.58 8.30 -92.71 -0.77 12.81 16 Total: -1.00 -62.98 332.21 4.70 -58.27 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 1.01 Total: 21.33 kcal Atomic # 6 Polarization: -32.38 SS G_CDS: 6.09 Total: -26.29 kcal Atomic # 7 Polarization: -91.51 SS G_CDS: -3.35 Total: -94.86 kcal Atomic # 14 Polarization: 36.96 SS G_CDS: 2.03 Total: 38.99 kcal Atomic # 16 Polarization: 3.64 SS G_CDS: -1.07 Total: 2.56 kcal Total: -62.98 4.70 -58.27 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082429047.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.518 kcal (2) G-P(sol) polarization free energy of solvation -62.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds