Wall clock time and date at job start Mon Mar 30 2020 06:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47148 * 2 1 4 4 C 1.46497 * 119.99927 * 269.99918 * 3 2 1 5 5 C 1.52995 * 109.47292 * 269.99866 * 4 3 2 6 6 C 1.37605 * 119.99819 * 89.99803 * 3 2 1 7 7 N 1.30656 * 125.12840 * 180.32646 * 6 3 2 8 8 C 1.30461 * 117.50980 * 180.23458 * 7 6 3 9 9 C 1.50703 * 122.56571 * 179.74912 * 8 7 6 10 10 C 1.53002 * 109.46966 * 59.70971 * 9 8 7 11 11 C 1.53000 * 109.46912 * 299.71058 * 9 8 7 12 12 C 1.38454 * 114.86672 * 359.47606 * 8 7 6 13 13 C 1.39913 * 126.08036 * 180.28975 * 12 8 7 14 14 H 1.08001 * 119.99834 * 0.02562 * 13 12 8 15 15 C 1.39898 * 120.00324 * 180.02562 * 13 12 8 16 16 N 1.31013 * 119.99887 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00134 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47173 * 59.99566 * 17 15 13 19 19 H 1.48500 * 109.46932 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46992 * 299.99510 * 17 15 13 21 21 S 1.76078 * 125.13531 * 0.02562 * 6 3 2 22 22 H 1.09000 * 109.47397 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47603 * 300.00018 * 1 2 3 24 24 H 1.09000 * 109.47128 * 59.99814 * 1 2 3 25 25 H 1.08997 * 109.46924 * 240.00012 * 2 1 3 26 26 H 1.08994 * 109.46877 * 119.99842 * 2 1 3 27 27 H 1.09000 * 109.47475 * 30.00094 * 4 3 2 28 28 H 1.09007 * 109.47002 * 149.99936 * 4 3 2 29 29 H 1.09000 * 109.47047 * 300.00490 * 5 4 3 30 30 H 1.09007 * 109.47039 * 60.00094 * 5 4 3 31 31 H 1.09001 * 109.47420 * 179.97438 * 5 4 3 32 32 H 1.09002 * 109.47152 * 179.70830 * 9 8 7 33 33 H 1.08996 * 109.47407 * 60.00310 * 10 9 8 34 34 H 1.09000 * 109.46986 * 180.02562 * 10 9 8 35 35 H 1.09002 * 109.47075 * 299.99352 * 10 9 8 36 36 H 1.09004 * 109.46724 * 180.02562 * 11 9 8 37 37 H 1.09001 * 109.47194 * 299.99742 * 11 9 8 38 38 H 1.08992 * 109.47399 * 59.99914 * 11 9 8 39 39 H 0.97000 * 119.99564 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7075 1.8314 -1.7104 6 6 2.2476 2.0298 1.1917 7 7 2.6757 3.2588 1.3086 8 6 2.8466 3.7252 2.5149 9 6 3.3406 5.1238 2.7814 10 6 2.3721 6.1334 2.1619 11 6 4.7280 5.3014 2.1613 12 6 2.5338 2.8389 3.5315 13 6 2.6240 3.0945 4.9042 14 1 2.9638 4.0585 5.2528 15 6 2.2740 2.1012 5.8251 16 7 1.8613 0.9319 5.4023 17 14 2.3937 2.4427 7.6578 18 1 1.5100 3.5837 8.0075 19 1 1.9685 1.2378 8.4146 20 1 3.7972 2.7782 8.0081 21 16 2.0014 1.3316 2.7893 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.5817 1.6877 -2.0284 28 1 2.0955 3.1410 -1.1384 29 1 4.3883 2.2155 -0.9507 30 1 3.8745 0.7621 -1.8407 31 1 3.8891 2.3448 -2.6546 32 1 3.3994 5.2896 3.8571 33 1 1.3837 6.0069 2.6036 34 1 2.7297 7.1450 2.3543 35 1 2.3134 5.9677 1.0862 36 1 5.0855 6.3129 2.3545 37 1 5.4180 4.5821 2.6026 38 1 4.6692 5.1356 1.0857 39 1 1.6183 0.2434 6.0409 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082434718.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:42 Heat of formation + Delta-G solvation = 8.011982 kcal Electronic energy + Delta-G solvation = -18986.167159 eV Core-core repulsion = 16247.137865 eV Total energy + Delta-G solvation = -2739.029294 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -37.98968 -36.52911 -33.88734 -33.22775 -31.52625 -29.44115 -28.22786 -26.21806 -24.72238 -23.16932 -22.68081 -21.37923 -19.30775 -18.42451 -16.82580 -15.92622 -15.71950 -14.60388 -14.32047 -13.84266 -13.58472 -13.11820 -13.04603 -12.97840 -12.61241 -12.43634 -12.01390 -11.73216 -11.66895 -11.52555 -11.39601 -11.27429 -11.19400 -10.97940 -10.66821 -10.58787 -10.48881 -10.35549 -10.18449 -9.73949 -9.67786 -8.97885 -8.40878 -7.71301 -7.34241 -6.85729 -6.43688 -4.14376 2.67645 2.97119 3.01020 3.18014 3.18516 3.74051 3.96520 4.19487 4.42528 5.15133 5.39600 5.59123 5.67240 5.82138 5.89636 5.95762 5.98446 6.01629 6.07506 6.20475 6.26208 6.28435 6.41905 6.52015 6.60802 6.63756 6.65631 6.73875 6.74863 6.81447 6.96657 7.22993 7.26489 7.46311 7.74652 7.94043 8.15142 8.36737 8.59814 8.79959 9.97096 10.00189 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.017184 B = 0.007890 C = 0.005857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.028367 B = 3547.828684 C = 4779.491080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.139 3.861 3 N -0.596 5.596 4 C 0.145 3.855 5 C -0.163 4.163 6 C 0.143 3.857 7 N -0.485 5.485 8 C -0.118 4.118 9 C 0.015 3.985 10 C -0.130 4.130 11 C -0.130 4.130 12 C -0.008 4.008 13 C -0.386 4.386 14 H 0.094 0.906 15 C 0.050 3.950 16 N -0.797 5.797 17 Si 0.931 3.069 18 H -0.263 1.263 19 H -0.277 1.277 20 H -0.263 1.263 21 S 0.089 5.911 22 H 0.054 0.946 23 H 0.061 0.939 24 H 0.049 0.951 25 H 0.062 0.938 26 H 0.067 0.933 27 H 0.051 0.949 28 H 0.072 0.928 29 H 0.059 0.941 30 H 0.043 0.957 31 H 0.048 0.952 32 H 0.065 0.935 33 H 0.044 0.956 34 H 0.034 0.966 35 H 0.050 0.950 36 H 0.034 0.966 37 H 0.044 0.956 38 H 0.050 0.950 39 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.327 -0.815 -5.146 5.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 N -0.320 5.320 4 C 0.018 3.982 5 C -0.223 4.223 6 C -0.221 4.221 7 N -0.204 5.204 8 C -0.249 4.249 9 C -0.006 4.006 10 C -0.187 4.187 11 C -0.187 4.187 12 C -0.131 4.131 13 C -0.422 4.422 14 H 0.112 0.888 15 C -0.167 4.167 16 N -0.425 5.425 17 Si 0.755 3.245 18 H -0.188 1.188 19 H -0.201 1.201 20 H -0.188 1.188 21 S 0.337 5.663 22 H 0.073 0.927 23 H 0.080 0.920 24 H 0.068 0.932 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.084 0.916 33 H 0.063 0.937 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -0.673 -1.773 -5.282 5.612 hybrid contribution 0.295 0.790 0.984 1.296 sum -0.378 -0.984 -4.298 4.425 Atomic orbital electron populations 1.22264 0.97479 1.00906 1.02308 1.21069 0.93326 0.82820 1.01364 1.44734 1.74521 1.11814 1.00933 1.20952 0.94374 0.97993 0.84865 1.22169 0.99225 1.00485 1.00377 1.24033 1.12721 0.93929 0.91384 1.65048 1.18194 1.10702 1.26420 1.19136 1.22368 0.97786 0.85569 1.19052 0.92889 0.90219 0.98399 1.21718 0.99242 0.96811 1.00975 1.21717 0.97343 0.98699 1.00974 1.22596 1.00169 0.93151 0.97194 1.18892 1.34821 0.99636 0.88845 0.88825 1.26051 0.93514 0.94285 1.02893 1.68877 1.32280 1.03917 1.37462 0.85941 0.79916 0.78862 0.79796 1.18760 1.20144 1.18759 1.85124 1.69847 1.17313 0.93979 0.92688 0.92001 0.93210 0.92009 0.91443 0.93108 0.90969 0.92235 0.93740 0.93254 0.91632 0.93714 0.94728 0.93079 0.94731 0.93725 0.93066 0.89512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.57 10.24 37.16 0.38 -2.19 16 2 C 0.14 2.30 6.11 -4.04 -0.02 2.27 16 3 N -0.60 -11.67 2.55 -174.47 -0.44 -12.11 16 4 C 0.14 2.47 6.24 -4.05 -0.03 2.45 16 5 C -0.16 -2.56 10.24 37.16 0.38 -2.18 16 6 C 0.14 3.36 7.90 -87.85 -0.69 2.67 16 7 N -0.48 -11.97 9.59 -9.32 -0.09 -12.06 16 8 C -0.12 -2.95 5.43 -83.09 -0.45 -3.40 16 9 C 0.02 0.34 3.20 -91.77 -0.29 0.04 16 10 C -0.13 -2.54 9.13 37.16 0.34 -2.20 16 11 C -0.13 -2.54 9.14 37.16 0.34 -2.20 16 12 C -0.01 -0.21 6.23 -38.88 -0.24 -0.45 16 13 C -0.39 -9.87 8.93 -38.33 -0.34 -10.21 16 14 H 0.09 2.28 6.40 -52.49 -0.34 1.94 16 15 C 0.05 1.21 5.50 -17.28 -0.09 1.12 16 16 N -0.80 -19.66 10.74 55.55 0.60 -19.06 16 17 Si 0.93 18.13 29.56 -169.99 -5.03 13.11 16 18 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 19 H -0.28 -5.25 7.11 56.52 0.40 -4.84 16 20 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 21 S 0.09 2.21 19.00 -107.50 -2.04 0.16 16 22 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 23 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 25 H 0.06 0.86 8.07 -51.93 -0.42 0.44 16 26 H 0.07 1.20 7.06 -51.93 -0.37 0.83 16 27 H 0.05 0.74 8.07 -51.93 -0.42 0.32 16 28 H 0.07 1.37 7.60 -51.93 -0.39 0.98 16 29 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 1.43 6.31 -51.93 -0.33 1.10 16 33 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.05 1.03 8.13 -51.93 -0.42 0.61 16 36 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.29 6.59 8.30 -40.82 -0.34 6.25 16 LS Contribution 330.54 15.07 4.98 4.98 Total: -1.00 -27.54 330.54 -9.22 -36.77 By element: Atomic # 1 Polarization: 8.97 SS G_CDS: -6.47 Total: 2.50 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: -0.73 Total: -14.30 kcal Atomic # 7 Polarization: -43.29 SS G_CDS: 0.06 Total: -43.23 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.11 kcal Atomic # 16 Polarization: 2.21 SS G_CDS: -2.04 Total: 0.16 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -27.54 -9.22 -36.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082434718.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.780 kcal (2) G-P(sol) polarization free energy of solvation -27.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds