Wall clock time and date at job start Mon Mar 30 2020 06:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47148 * 2 1 4 4 C 1.46497 * 119.99927 * 269.99918 * 3 2 1 5 5 C 1.52995 * 109.47292 * 269.99866 * 4 3 2 6 6 C 1.37605 * 119.99819 * 89.99803 * 3 2 1 7 7 N 1.30656 * 125.12840 * 180.32646 * 6 3 2 8 8 C 1.30461 * 117.50980 * 180.23458 * 7 6 3 9 9 C 1.50703 * 122.56571 * 179.74912 * 8 7 6 10 10 C 1.53002 * 109.46966 * 59.70971 * 9 8 7 11 11 C 1.53000 * 109.46912 * 299.71058 * 9 8 7 12 12 C 1.38454 * 114.86672 * 359.47606 * 8 7 6 13 13 C 1.39913 * 126.08036 * 180.28975 * 12 8 7 14 14 H 1.08001 * 119.99834 * 0.02562 * 13 12 8 15 15 C 1.39898 * 120.00324 * 180.02562 * 13 12 8 16 16 N 1.31013 * 119.99887 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00134 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47173 * 59.99566 * 17 15 13 19 19 H 1.48500 * 109.46932 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46992 * 299.99510 * 17 15 13 21 21 S 1.76078 * 125.13531 * 0.02562 * 6 3 2 22 22 H 1.09000 * 109.47397 * 179.97438 * 1 2 3 23 23 H 1.09002 * 109.47603 * 300.00018 * 1 2 3 24 24 H 1.09000 * 109.47128 * 59.99814 * 1 2 3 25 25 H 1.08997 * 109.46924 * 240.00012 * 2 1 3 26 26 H 1.08994 * 109.46877 * 119.99842 * 2 1 3 27 27 H 1.09000 * 109.47475 * 30.00094 * 4 3 2 28 28 H 1.09007 * 109.47002 * 149.99936 * 4 3 2 29 29 H 1.09000 * 109.47047 * 300.00490 * 5 4 3 30 30 H 1.09007 * 109.47039 * 60.00094 * 5 4 3 31 31 H 1.09001 * 109.47420 * 179.97438 * 5 4 3 32 32 H 1.09002 * 109.47152 * 179.70830 * 9 8 7 33 33 H 1.08996 * 109.47407 * 60.00310 * 10 9 8 34 34 H 1.09000 * 109.46986 * 180.02562 * 10 9 8 35 35 H 1.09002 * 109.47075 * 299.99352 * 10 9 8 36 36 H 1.09004 * 109.46724 * 180.02562 * 11 9 8 37 37 H 1.09001 * 109.47194 * 299.99742 * 11 9 8 38 38 H 1.08992 * 109.47399 * 59.99914 * 11 9 8 39 39 H 0.97000 * 119.99564 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7075 1.8314 -1.7104 6 6 2.2476 2.0298 1.1917 7 7 2.6757 3.2588 1.3086 8 6 2.8466 3.7252 2.5149 9 6 3.3406 5.1238 2.7814 10 6 2.3721 6.1334 2.1619 11 6 4.7280 5.3014 2.1613 12 6 2.5338 2.8389 3.5315 13 6 2.6240 3.0945 4.9042 14 1 2.9638 4.0585 5.2528 15 6 2.2740 2.1012 5.8251 16 7 1.8613 0.9319 5.4023 17 14 2.3937 2.4427 7.6578 18 1 1.5100 3.5837 8.0075 19 1 1.9685 1.2378 8.4146 20 1 3.7972 2.7782 8.0081 21 16 2.0014 1.3316 2.7893 22 1 -0.3634 -1.0276 -0.0005 23 1 -0.3634 0.5138 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 1.8933 -0.5138 -0.8900 26 1 1.8933 -0.5138 0.8900 27 1 1.5817 1.6877 -2.0284 28 1 2.0955 3.1410 -1.1384 29 1 4.3883 2.2155 -0.9507 30 1 3.8745 0.7621 -1.8407 31 1 3.8891 2.3448 -2.6546 32 1 3.3994 5.2896 3.8571 33 1 1.3837 6.0069 2.6036 34 1 2.7297 7.1450 2.3543 35 1 2.3134 5.9677 1.0862 36 1 5.0855 6.3129 2.3545 37 1 5.4180 4.5821 2.6026 38 1 4.6692 5.1356 1.0857 39 1 1.6183 0.2434 6.0409 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082434718.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:41 Heat of formation + Delta-G solvation = -5.034312 kcal Electronic energy + Delta-G solvation = -18986.732889 eV Core-core repulsion = 16247.137865 eV Total energy + Delta-G solvation = -2739.595024 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.76453 -38.10039 -35.69577 -34.90894 -32.84130 -31.20134 -29.78900 -27.81161 -26.47900 -24.64870 -24.28029 -23.01180 -20.89799 -20.26431 -18.57298 -17.61024 -17.44103 -16.19847 -15.91961 -15.39917 -15.16964 -14.70398 -14.56659 -14.49989 -14.19546 -14.02892 -13.46636 -13.32619 -13.27799 -12.99036 -12.86710 -12.82555 -12.74575 -12.48082 -12.35965 -12.05545 -11.90882 -11.83208 -11.73954 -11.46455 -11.39097 -10.82659 -10.13627 -9.59042 -9.22073 -8.65782 -8.25277 -6.00495 0.88773 1.32937 1.38914 1.50916 1.56118 1.96174 2.21899 2.58634 2.64729 3.27913 4.06851 4.27597 4.30588 4.36758 4.38278 4.58921 4.59461 4.62903 4.68984 4.76357 4.88105 4.92228 4.95685 5.02230 5.05662 5.11825 5.15435 5.18376 5.19631 5.36168 5.45049 5.52276 5.60930 5.71102 5.96191 6.17265 6.48142 6.58743 6.75142 7.03828 8.11099 8.21285 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.017184 B = 0.007890 C = 0.005857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.028367 B = 3547.828684 C = 4779.491080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.132 3.868 3 N -0.597 5.597 4 C 0.141 3.859 5 C -0.153 4.153 6 C 0.154 3.846 7 N -0.503 5.503 8 C -0.130 4.130 9 C 0.009 3.991 10 C -0.118 4.118 11 C -0.117 4.117 12 C -0.050 4.050 13 C -0.418 4.418 14 H 0.096 0.904 15 C 0.011 3.989 16 N -0.825 5.825 17 Si 1.001 2.999 18 H -0.259 1.259 19 H -0.266 1.266 20 H -0.259 1.259 21 S 0.067 5.933 22 H 0.083 0.917 23 H 0.028 0.972 24 H 0.062 0.938 25 H 0.098 0.902 26 H 0.050 0.950 27 H 0.087 0.913 28 H 0.048 0.952 29 H 0.023 0.977 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.059 0.941 33 H 0.030 0.970 34 H 0.067 0.933 35 H 0.041 0.959 36 H 0.067 0.933 37 H 0.029 0.971 38 H 0.041 0.959 39 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.317 -0.812 -6.043 6.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.008 3.992 3 N -0.322 5.322 4 C 0.015 3.985 5 C -0.212 4.212 6 C -0.212 4.212 7 N -0.224 5.224 8 C -0.260 4.260 9 C -0.012 4.012 10 C -0.175 4.175 11 C -0.175 4.175 12 C -0.173 4.173 13 C -0.454 4.454 14 H 0.113 0.887 15 C -0.203 4.203 16 N -0.454 5.454 17 Si 0.821 3.179 18 H -0.183 1.183 19 H -0.191 1.191 20 H -0.183 1.183 21 S 0.315 5.685 22 H 0.101 0.899 23 H 0.047 0.953 24 H 0.081 0.919 25 H 0.117 0.883 26 H 0.068 0.932 27 H 0.105 0.895 28 H 0.067 0.933 29 H 0.042 0.958 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.049 0.951 34 H 0.086 0.914 35 H 0.060 0.940 36 H 0.086 0.914 37 H 0.049 0.951 38 H 0.060 0.940 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.668 -1.782 -6.208 6.493 hybrid contribution 0.271 0.727 1.070 1.322 sum -0.397 -1.054 -5.138 5.260 Atomic orbital electron populations 1.22168 0.96189 1.02456 1.01226 1.21330 0.94317 0.81240 1.02274 1.45171 1.73760 1.12855 1.00402 1.21136 0.96202 0.96711 0.84405 1.22055 0.97154 1.01517 1.00449 1.24477 1.10551 0.93642 0.92500 1.65163 1.19806 1.11189 1.26219 1.19723 1.21656 0.99090 0.85497 1.19178 0.94471 0.89169 0.98432 1.21587 0.98076 0.98000 0.99886 1.21584 0.95785 1.00280 0.99867 1.22986 1.02021 0.94000 0.98257 1.19138 1.36561 1.00484 0.89211 0.88663 1.26950 0.92484 0.93675 1.07210 1.68936 1.32769 1.04697 1.39021 0.84903 0.79984 0.78993 0.73986 1.18299 1.19071 1.18288 1.84976 1.70476 1.17741 0.95285 0.89869 0.95298 0.91944 0.88349 0.93185 0.89470 0.93295 0.95782 0.92365 0.90482 0.92219 0.95101 0.91367 0.93981 0.91370 0.95133 0.93996 0.88886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.58 10.24 71.98 0.74 -3.85 16 2 C 0.13 4.13 6.11 86.38 0.53 4.66 16 3 N -0.60 -22.91 2.55 -705.90 -1.80 -24.71 16 4 C 0.14 4.55 6.24 86.38 0.54 5.09 16 5 C -0.15 -4.48 10.24 71.98 0.74 -3.74 16 6 C 0.15 7.37 7.90 179.38 1.42 8.79 16 7 N -0.50 -25.44 9.59 -183.39 -1.76 -27.20 16 8 C -0.13 -6.69 5.43 42.81 0.23 -6.46 16 9 C 0.01 0.38 3.20 -11.54 -0.04 0.34 16 10 C -0.12 -4.56 9.13 71.98 0.66 -3.90 16 11 C -0.12 -4.55 9.14 71.98 0.66 -3.90 16 12 C -0.05 -2.73 6.23 22.73 0.14 -2.58 16 13 C -0.42 -22.13 8.93 23.08 0.21 -21.92 16 14 H 0.10 4.80 6.40 -2.91 -0.02 4.78 16 15 C 0.01 0.55 5.50 85.22 0.47 1.02 16 16 N -0.83 -41.72 10.74 21.83 0.23 -41.49 16 17 Si 1.00 37.28 29.56 68.60 2.03 39.31 16 18 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 19 H -0.27 -9.37 7.11 99.48 0.71 -8.66 16 20 H -0.26 -9.36 7.11 99.48 0.71 -8.66 16 21 S 0.07 3.45 19.00 -56.49 -1.07 2.38 16 22 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 23 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 24 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 25 H 0.10 2.39 8.07 -2.39 -0.02 2.37 16 26 H 0.05 1.75 7.06 -2.39 -0.02 1.74 16 27 H 0.09 2.21 8.07 -2.39 -0.02 2.19 16 28 H 0.05 1.82 7.60 -2.38 -0.02 1.80 16 29 H 0.02 0.85 8.14 -2.39 -0.02 0.84 16 30 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.06 2.65 6.31 -2.39 -0.02 2.63 16 33 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.04 1.67 8.13 -2.39 -0.02 1.65 16 36 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.30 13.70 8.30 -92.71 -0.77 12.93 16 Total: -1.00 -62.06 330.54 4.93 -57.13 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 1.01 Total: 21.03 kcal Atomic # 6 Polarization: -32.74 SS G_CDS: 6.28 Total: -26.46 kcal Atomic # 7 Polarization: -90.08 SS G_CDS: -3.32 Total: -93.40 kcal Atomic # 14 Polarization: 37.28 SS G_CDS: 2.03 Total: 39.31 kcal Atomic # 16 Polarization: 3.45 SS G_CDS: -1.07 Total: 2.38 kcal Total: -62.06 4.93 -57.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082434718.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.099 kcal (2) G-P(sol) polarization free energy of solvation -62.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds