Wall clock time and date at job start Mon Mar 30 2020 06:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 111.00030 * 2 1 4 4 C 1.46900 * 111.00287 * 123.95575 * 2 1 3 5 5 C 1.50699 * 109.47228 * 170.00250 * 4 2 1 6 6 N 1.29524 * 124.56173 * 90.28544 * 5 4 2 7 7 C 1.30671 * 117.62769 * 180.20053 * 6 5 4 8 8 C 1.50708 * 123.22393 * 179.82265 * 7 6 5 9 9 C 1.52997 * 109.47141 * 239.70820 * 8 7 6 10 10 C 1.52992 * 109.47025 * 119.70427 * 8 7 6 11 11 C 1.53006 * 109.46735 * 359.70601 * 8 7 6 12 12 C 1.38588 * 113.55637 * 359.55569 * 7 6 5 13 13 C 1.40036 * 126.25844 * 180.25412 * 12 7 6 14 14 H 1.07998 * 119.99687 * 359.97438 * 13 12 7 15 15 C 1.40074 * 120.00251 * 180.02562 * 13 12 7 16 16 N 1.30869 * 119.99361 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00291 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47556 * 89.99646 * 17 15 13 19 19 H 1.48503 * 109.47095 * 209.99742 * 17 15 13 20 20 H 1.48506 * 109.46754 * 329.99424 * 17 15 13 21 21 S 1.70884 * 124.55850 * 270.02206 * 5 4 2 22 22 H 1.08995 * 109.46964 * 296.04568 * 1 2 3 23 23 H 1.09001 * 109.46994 * 56.04867 * 1 2 3 24 24 H 1.08994 * 109.46642 * 176.04027 * 1 2 3 25 25 H 1.08998 * 109.47175 * 183.95054 * 3 2 1 26 26 H 1.08995 * 109.47179 * 303.95293 * 3 2 1 27 27 H 1.09003 * 109.47023 * 63.95171 * 3 2 1 28 28 H 1.08996 * 109.47106 * 49.99626 * 4 2 1 29 29 H 1.09003 * 109.46762 * 289.99999 * 4 2 1 30 30 H 1.09002 * 109.47153 * 299.99670 * 9 8 7 31 31 H 1.09001 * 109.46832 * 179.97438 * 9 8 7 32 32 H 1.09004 * 109.47261 * 59.99842 * 9 8 7 33 33 H 1.09001 * 109.47066 * 180.02562 * 10 8 7 34 34 H 1.08996 * 109.47747 * 300.00019 * 10 8 7 35 35 H 1.09002 * 109.47103 * 60.00431 * 10 8 7 36 36 H 1.08993 * 109.46955 * 300.00223 * 11 8 7 37 37 H 1.09000 * 109.47050 * 60.00052 * 11 8 7 38 38 H 1.09001 * 109.47002 * 179.97438 * 11 8 7 39 39 H 0.97000 * 119.99086 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.4818 -0.9524 0.9728 6 7 4.3796 -0.1377 1.4287 7 6 5.6332 -0.4300 1.2041 8 6 6.7785 0.4300 1.6731 9 6 7.5960 0.8935 0.4658 10 6 7.6726 -0.3801 2.6139 11 6 6.2293 1.6498 2.4159 12 6 5.8090 -1.6097 0.4984 13 6 7.0336 -2.1738 0.1199 14 1 7.9585 -1.6800 0.3789 15 6 7.0588 -3.3778 -0.5955 16 7 5.9379 -3.9757 -0.9097 17 14 8.6923 -4.1306 -1.0997 18 1 9.1677 -5.0441 -0.0299 19 1 8.5170 -4.8944 -2.3611 20 1 9.6909 -3.0515 -1.3091 21 16 4.2098 -2.2706 0.1649 22 1 -0.3633 0.4512 0.9233 23 1 -0.3633 0.5739 -0.8525 24 1 -0.3632 -1.0252 -0.0710 25 1 3.0828 1.3433 -0.0708 26 1 1.5899 1.9163 -0.8524 27 1 1.7044 1.8724 0.9233 28 1 1.5090 -1.7406 1.1756 29 1 1.7976 -0.2248 2.0628 30 1 7.9871 0.0246 -0.0634 31 1 8.4240 1.5159 0.8050 32 1 6.9589 1.4707 -0.2044 33 1 8.5007 0.2421 2.9535 34 1 7.0903 -0.7103 3.4740 35 1 8.0638 -1.2490 2.0847 36 1 5.5923 2.2268 1.7457 37 1 5.6469 1.3195 3.2761 38 1 7.0577 2.2716 2.7556 39 1 5.9555 -4.8097 -1.4047 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082440649.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:25 Heat of formation + Delta-G solvation = 12.184128 kcal Electronic energy + Delta-G solvation = -19140.163846 eV Core-core repulsion = 16401.315469 eV Total energy + Delta-G solvation = -2738.848376 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -38.38132 -36.73982 -34.57131 -34.08860 -29.70366 -28.14911 -27.04171 -26.32984 -26.09514 -24.49220 -22.50866 -21.21175 -19.14310 -18.25757 -16.96933 -15.62951 -15.17132 -14.88615 -14.44892 -14.21026 -13.78260 -13.35767 -13.02439 -12.89481 -12.24817 -12.01847 -11.93239 -11.74236 -11.57748 -11.43861 -11.30953 -11.22514 -11.08119 -10.99334 -10.82063 -10.77391 -10.49561 -10.31092 -9.97296 -9.76805 -9.73793 -8.85878 -7.88961 -7.72553 -7.59544 -6.97561 -6.96715 -4.51426 2.52467 2.90797 2.95185 3.05440 3.53252 3.66323 4.10898 4.17246 4.72620 5.07686 5.57575 5.61049 5.72696 5.82720 5.89538 5.98204 6.02581 6.09934 6.17466 6.21051 6.34283 6.38323 6.42129 6.56235 6.64075 6.65777 6.69235 6.73560 6.78752 6.94893 7.11260 7.19367 7.30827 7.48384 7.58191 7.65286 7.80406 7.99583 8.41093 8.42595 9.79683 9.87142 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.017726 B = 0.007946 C = 0.005937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.264275 B = 3522.755626 C = 4715.032192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.542 5.542 3 C 0.037 3.963 4 C 0.169 3.831 5 C -0.180 4.180 6 N -0.421 5.421 7 C -0.127 4.127 8 C 0.044 3.956 9 C -0.139 4.139 10 C -0.139 4.139 11 C -0.116 4.116 12 C 0.005 3.995 13 C -0.371 4.371 14 H 0.105 0.895 15 C 0.048 3.952 16 N -0.773 5.773 17 Si 0.929 3.071 18 H -0.265 1.265 19 H -0.273 1.273 20 H -0.257 1.257 21 S 0.138 5.862 22 H 0.017 0.983 23 H 0.061 0.939 24 H 0.063 0.937 25 H 0.079 0.921 26 H 0.051 0.949 27 H 0.016 0.984 28 H 0.067 0.933 29 H 0.031 0.969 30 H 0.067 0.933 31 H 0.036 0.964 32 H 0.043 0.957 33 H 0.036 0.964 34 H 0.043 0.957 35 H 0.067 0.933 36 H 0.048 0.952 37 H 0.048 0.952 38 H 0.032 0.968 39 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.037 2.555 0.692 2.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.266 5.266 3 C -0.112 4.112 4 C 0.040 3.960 5 C -0.448 4.448 6 N -0.134 5.134 7 C -0.263 4.263 8 C 0.042 3.958 9 C -0.197 4.197 10 C -0.197 4.197 11 C -0.173 4.173 12 C -0.119 4.119 13 C -0.408 4.408 14 H 0.123 0.877 15 C -0.174 4.174 16 N -0.400 5.400 17 Si 0.752 3.248 18 H -0.190 1.190 19 H -0.198 1.198 20 H -0.181 1.181 21 S 0.391 5.609 22 H 0.035 0.965 23 H 0.079 0.921 24 H 0.082 0.918 25 H 0.098 0.902 26 H 0.070 0.930 27 H 0.034 0.966 28 H 0.085 0.915 29 H 0.049 0.951 30 H 0.086 0.914 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.086 0.914 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.051 0.949 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.765 1.750 -0.034 2.486 hybrid contribution 0.969 0.533 0.723 1.321 sum -0.796 2.283 0.689 2.514 Atomic orbital electron populations 1.22335 0.88755 1.01557 0.99577 1.62044 1.06018 1.14147 1.44433 1.22238 1.02367 0.88146 0.98425 1.19955 0.89662 0.96348 0.90061 1.25411 0.96985 1.04135 1.18273 1.64979 1.00688 1.30065 1.17644 1.19583 0.90164 0.99795 1.16741 1.18355 0.91442 0.92563 0.93484 1.21931 0.98456 1.00969 0.98309 1.21932 0.98190 1.00382 0.99180 1.21569 0.98854 0.96928 0.99975 1.23042 0.96452 0.95448 0.96972 1.19339 0.93388 1.02901 1.25151 0.87697 1.26221 0.99276 0.97047 0.94807 1.69026 1.27976 1.15490 1.27489 0.85903 0.80434 0.79624 0.78800 1.19002 1.19766 1.18079 1.84040 0.97768 1.23582 1.55553 0.96483 0.92063 0.91815 0.90199 0.93023 0.96589 0.91453 0.95129 0.91384 0.94465 0.93744 0.94455 0.93770 0.91399 0.93314 0.93318 0.94901 0.89175 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.57 60.06 0.57 0.97 16 2 N -0.54 -10.23 5.01 -252.73 -1.27 -11.50 16 3 C 0.04 0.67 9.36 60.07 0.56 1.23 16 4 C 0.17 3.45 5.53 -4.98 -0.03 3.43 16 5 C -0.18 -4.28 6.01 -13.25 -0.08 -4.36 16 6 N -0.42 -10.35 8.76 -7.07 -0.06 -10.42 16 7 C -0.13 -3.08 5.52 -82.95 -0.46 -3.54 16 8 C 0.04 0.92 0.75 -155.66 -0.12 0.80 16 9 C -0.14 -2.70 8.25 37.16 0.31 -2.39 16 10 C -0.14 -2.69 8.25 37.15 0.31 -2.39 16 11 C -0.12 -2.23 7.82 37.16 0.29 -1.94 16 12 C 0.00 0.12 6.04 -38.78 -0.23 -0.12 16 13 C -0.37 -8.87 7.25 -38.22 -0.28 -9.15 16 14 H 0.11 2.37 4.21 -52.49 -0.22 2.15 16 15 C 0.05 1.10 5.50 -17.27 -0.09 1.00 16 16 N -0.77 -18.26 10.76 55.56 0.60 -17.67 16 17 Si 0.93 17.10 29.56 -169.99 -5.03 12.07 16 18 H -0.27 -4.83 7.11 56.52 0.40 -4.43 16 19 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 20 H -0.26 -4.65 7.11 56.52 0.40 -4.25 16 21 S 0.14 3.42 20.23 -107.50 -2.17 1.25 16 22 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 23 H 0.06 0.81 8.12 -51.93 -0.42 0.39 16 24 H 0.06 0.87 8.12 -51.93 -0.42 0.45 16 25 H 0.08 1.71 6.70 -51.93 -0.35 1.36 16 26 H 0.05 0.83 8.12 -51.93 -0.42 0.41 16 27 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 1.29 8.06 -51.93 -0.42 0.87 16 29 H 0.03 0.62 8.12 -51.93 -0.42 0.20 16 30 H 0.07 1.38 5.34 -51.93 -0.28 1.10 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 1.36 5.35 -51.93 -0.28 1.08 16 36 H 0.05 0.97 8.13 -51.93 -0.42 0.55 16 37 H 0.05 0.97 8.13 -51.93 -0.42 0.55 16 38 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.30 6.33 8.30 -40.82 -0.34 5.99 16 LS Contribution 319.18 15.07 4.81 4.81 Total: -1.00 -26.42 319.18 -8.53 -34.95 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -6.17 Total: 2.94 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: 0.75 Total: -16.45 kcal Atomic # 7 Polarization: -38.85 SS G_CDS: -0.73 Total: -39.58 kcal Atomic # 14 Polarization: 17.10 SS G_CDS: -5.03 Total: 12.07 kcal Atomic # 16 Polarization: 3.42 SS G_CDS: -2.17 Total: 1.25 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -26.42 -8.53 -34.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082440649.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.138 kcal (2) G-P(sol) polarization free energy of solvation -26.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds