Wall clock time and date at job start Mon Mar 30 2020 06:32:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 111.00030 * 2 1 4 4 C 1.46900 * 111.00287 * 123.95575 * 2 1 3 5 5 C 1.50699 * 109.47228 * 170.00250 * 4 2 1 6 6 N 1.29524 * 124.56173 * 90.28544 * 5 4 2 7 7 C 1.30671 * 117.62769 * 180.20053 * 6 5 4 8 8 C 1.50708 * 123.22393 * 179.82265 * 7 6 5 9 9 C 1.52997 * 109.47141 * 239.70820 * 8 7 6 10 10 C 1.52992 * 109.47025 * 119.70427 * 8 7 6 11 11 C 1.53006 * 109.46735 * 359.70601 * 8 7 6 12 12 C 1.38588 * 113.55637 * 359.55569 * 7 6 5 13 13 C 1.40036 * 126.25844 * 180.25412 * 12 7 6 14 14 H 1.07998 * 119.99687 * 359.97438 * 13 12 7 15 15 C 1.40074 * 120.00251 * 180.02562 * 13 12 7 16 16 N 1.30869 * 119.99361 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00291 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47556 * 89.99646 * 17 15 13 19 19 H 1.48503 * 109.47095 * 209.99742 * 17 15 13 20 20 H 1.48506 * 109.46754 * 329.99424 * 17 15 13 21 21 S 1.70884 * 124.55850 * 270.02206 * 5 4 2 22 22 H 1.08995 * 109.46964 * 296.04568 * 1 2 3 23 23 H 1.09001 * 109.46994 * 56.04867 * 1 2 3 24 24 H 1.08994 * 109.46642 * 176.04027 * 1 2 3 25 25 H 1.08998 * 109.47175 * 183.95054 * 3 2 1 26 26 H 1.08995 * 109.47179 * 303.95293 * 3 2 1 27 27 H 1.09003 * 109.47023 * 63.95171 * 3 2 1 28 28 H 1.08996 * 109.47106 * 49.99626 * 4 2 1 29 29 H 1.09003 * 109.46762 * 289.99999 * 4 2 1 30 30 H 1.09002 * 109.47153 * 299.99670 * 9 8 7 31 31 H 1.09001 * 109.46832 * 179.97438 * 9 8 7 32 32 H 1.09004 * 109.47261 * 59.99842 * 9 8 7 33 33 H 1.09001 * 109.47066 * 180.02562 * 10 8 7 34 34 H 1.08996 * 109.47747 * 300.00019 * 10 8 7 35 35 H 1.09002 * 109.47103 * 60.00431 * 10 8 7 36 36 H 1.08993 * 109.46955 * 300.00223 * 11 8 7 37 37 H 1.09000 * 109.47050 * 60.00052 * 11 8 7 38 38 H 1.09001 * 109.47002 * 179.97438 * 11 8 7 39 39 H 0.97000 * 119.99086 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 3.4818 -0.9524 0.9728 6 7 4.3796 -0.1377 1.4287 7 6 5.6332 -0.4300 1.2041 8 6 6.7785 0.4300 1.6731 9 6 7.5960 0.8935 0.4658 10 6 7.6726 -0.3801 2.6139 11 6 6.2293 1.6498 2.4159 12 6 5.8090 -1.6097 0.4984 13 6 7.0336 -2.1738 0.1199 14 1 7.9585 -1.6800 0.3789 15 6 7.0588 -3.3778 -0.5955 16 7 5.9379 -3.9757 -0.9097 17 14 8.6923 -4.1306 -1.0997 18 1 9.1677 -5.0441 -0.0299 19 1 8.5170 -4.8944 -2.3611 20 1 9.6909 -3.0515 -1.3091 21 16 4.2098 -2.2706 0.1649 22 1 -0.3633 0.4512 0.9233 23 1 -0.3633 0.5739 -0.8525 24 1 -0.3632 -1.0252 -0.0710 25 1 3.0828 1.3433 -0.0708 26 1 1.5899 1.9163 -0.8524 27 1 1.7044 1.8724 0.9233 28 1 1.5090 -1.7406 1.1756 29 1 1.7976 -0.2248 2.0628 30 1 7.9871 0.0246 -0.0634 31 1 8.4240 1.5159 0.8050 32 1 6.9589 1.4707 -0.2044 33 1 8.5007 0.2421 2.9535 34 1 7.0903 -0.7103 3.4740 35 1 8.0638 -1.2490 2.0847 36 1 5.5923 2.2268 1.7457 37 1 5.6469 1.3195 3.2761 38 1 7.0577 2.2716 2.7556 39 1 5.9555 -4.8097 -1.4047 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082440649.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:25 Heat of formation + Delta-G solvation = -3.057553 kcal Electronic energy + Delta-G solvation = -19140.824774 eV Core-core repulsion = 16401.315469 eV Total energy + Delta-G solvation = -2739.509305 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.12574 -38.23799 -36.23291 -35.83550 -31.46228 -29.78666 -28.40293 -27.87429 -27.67138 -26.19857 -24.21416 -22.75207 -20.86484 -19.99654 -18.73644 -17.37522 -16.82619 -16.39234 -15.91823 -15.71830 -15.35633 -14.96708 -14.65484 -14.51214 -13.94278 -13.58521 -13.49846 -13.22962 -12.99377 -12.90352 -12.81990 -12.75514 -12.61346 -12.48138 -12.38762 -12.33016 -12.14438 -11.94170 -11.57143 -11.40473 -11.39114 -10.63700 -9.62117 -9.55197 -9.19711 -8.86609 -8.72174 -6.33760 0.76372 1.39614 1.53001 1.55964 1.67868 2.08328 2.28984 2.44693 3.13330 3.38456 4.00738 4.27077 4.31441 4.33368 4.42281 4.44717 4.53443 4.66275 4.75546 4.79543 4.87742 4.95277 4.95766 4.98752 5.01335 5.07423 5.09802 5.13232 5.21686 5.35636 5.41778 5.54656 5.74424 5.81804 6.00529 6.08598 6.20720 6.28305 6.60306 6.63052 8.02230 8.09315 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.017726 B = 0.007946 C = 0.005937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1579.264275 B = 3522.755626 C = 4715.032192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.559 5.559 3 C 0.045 3.955 4 C 0.176 3.824 5 C -0.186 4.186 6 N -0.433 5.433 7 C -0.146 4.146 8 C 0.036 3.964 9 C -0.131 4.131 10 C -0.132 4.132 11 C -0.105 4.105 12 C -0.020 4.020 13 C -0.385 4.385 14 H 0.116 0.884 15 C 0.009 3.991 16 N -0.799 5.799 17 Si 0.999 3.001 18 H -0.259 1.259 19 H -0.267 1.267 20 H -0.249 1.249 21 S 0.100 5.900 22 H 0.028 0.972 23 H 0.079 0.921 24 H 0.072 0.928 25 H 0.042 0.958 26 H 0.075 0.925 27 H 0.020 0.980 28 H 0.075 0.925 29 H 0.028 0.972 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.029 0.971 33 H 0.069 0.931 34 H 0.030 0.970 35 H 0.056 0.944 36 H 0.034 0.966 37 H 0.033 0.967 38 H 0.064 0.936 39 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.042 2.963 0.555 3.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.284 5.284 3 C -0.103 4.103 4 C 0.046 3.954 5 C -0.455 4.455 6 N -0.146 5.146 7 C -0.282 4.282 8 C 0.034 3.966 9 C -0.189 4.189 10 C -0.189 4.189 11 C -0.163 4.163 12 C -0.144 4.144 13 C -0.422 4.422 14 H 0.134 0.866 15 C -0.210 4.210 16 N -0.426 5.426 17 Si 0.818 3.182 18 H -0.184 1.184 19 H -0.192 1.192 20 H -0.172 1.172 21 S 0.352 5.648 22 H 0.047 0.953 23 H 0.098 0.902 24 H 0.091 0.909 25 H 0.061 0.939 26 H 0.094 0.906 27 H 0.038 0.962 28 H 0.093 0.907 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.088 0.912 32 H 0.049 0.951 33 H 0.088 0.912 34 H 0.049 0.951 35 H 0.075 0.925 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.083 0.917 39 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.793 2.172 -0.165 2.318 hybrid contribution 0.597 0.406 0.750 1.041 sum -0.195 2.578 0.585 2.651 Atomic orbital electron populations 1.22412 0.85885 1.02742 1.00971 1.61977 1.08652 1.14169 1.43647 1.22114 1.00117 0.88384 0.99687 1.19905 0.87834 0.97088 0.90618 1.25936 0.98499 1.03419 1.17659 1.65061 1.01138 1.30259 1.18150 1.20201 0.91053 1.00197 1.16758 1.18540 0.90850 0.92806 0.94449 1.21839 0.98900 1.00720 0.97404 1.21843 0.98617 1.00324 0.98129 1.21456 0.99469 0.96501 0.98827 1.23396 0.96820 0.96223 0.97953 1.19676 0.93346 1.03678 1.25475 0.86610 1.27179 1.02788 0.96890 0.94100 1.69093 1.30005 1.15974 1.27498 0.84874 0.75922 0.78835 0.78534 1.18398 1.19168 1.17229 1.83959 0.98975 1.24993 1.56836 0.95347 0.90179 0.90903 0.93885 0.90627 0.96159 0.90668 0.95365 0.92547 0.91224 0.95132 0.91222 0.95070 0.92471 0.94728 0.94748 0.91725 0.88368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.76 9.57 127.69 1.22 1.98 16 2 N -0.56 -20.79 5.01 -953.49 -4.78 -25.56 16 3 C 0.05 1.65 9.36 127.69 1.19 2.84 16 4 C 0.18 7.21 5.53 85.56 0.47 7.68 16 5 C -0.19 -9.10 6.01 88.45 0.53 -8.57 16 6 N -0.43 -21.86 8.76 -176.30 -1.54 -23.40 16 7 C -0.15 -7.24 5.52 42.82 0.24 -7.01 16 8 C 0.04 1.48 0.75 -52.93 -0.04 1.44 16 9 C -0.13 -4.93 8.25 71.98 0.59 -4.34 16 10 C -0.13 -4.92 8.25 71.98 0.59 -4.33 16 11 C -0.10 -3.94 7.82 71.98 0.56 -3.38 16 12 C -0.02 -1.06 6.04 22.79 0.14 -0.92 16 13 C -0.39 -18.53 7.25 23.15 0.17 -18.36 16 14 H 0.12 5.18 4.21 -2.91 -0.01 5.16 16 15 C 0.01 0.43 5.50 85.28 0.47 0.90 16 16 N -0.80 -38.07 10.76 21.86 0.24 -37.84 16 17 Si 1.00 34.03 29.56 68.60 2.03 36.06 16 18 H -0.26 -8.58 7.11 99.48 0.71 -7.87 16 19 H -0.27 -8.80 7.11 99.48 0.71 -8.09 16 20 H -0.25 -8.11 7.11 99.48 0.71 -7.41 16 21 S 0.10 5.12 20.23 -56.49 -1.14 3.98 16 22 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 23 H 0.08 1.90 8.12 -2.39 -0.02 1.88 16 24 H 0.07 1.86 8.12 -2.39 -0.02 1.84 16 25 H 0.04 1.87 6.70 -2.39 -0.02 1.86 16 26 H 0.08 2.32 8.12 -2.39 -0.02 2.31 16 27 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.07 2.90 8.06 -2.39 -0.02 2.88 16 29 H 0.03 1.16 8.12 -2.39 -0.02 1.14 16 30 H 0.06 2.23 5.34 -2.39 -0.01 2.22 16 31 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 33 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.03 1.20 8.14 -2.39 -0.02 1.19 16 35 H 0.06 2.24 5.35 -2.39 -0.01 2.23 16 36 H 0.03 1.36 8.13 -2.39 -0.02 1.34 16 37 H 0.03 1.35 8.13 -2.39 -0.02 1.33 16 38 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.30 13.01 8.30 -92.71 -0.77 12.24 16 Total: -1.00 -57.83 319.18 1.97 -55.86 By element: Atomic # 1 Polarization: 21.94 SS G_CDS: 1.03 Total: 22.96 kcal Atomic # 6 Polarization: -38.21 SS G_CDS: 6.14 Total: -32.06 kcal Atomic # 7 Polarization: -80.71 SS G_CDS: -6.08 Total: -86.80 kcal Atomic # 14 Polarization: 34.03 SS G_CDS: 2.03 Total: 36.06 kcal Atomic # 16 Polarization: 5.12 SS G_CDS: -1.14 Total: 3.98 kcal Total: -57.83 1.97 -55.86 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082440649.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.805 kcal (2) G-P(sol) polarization free energy of solvation -57.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds