Wall clock time and date at job start Mon Mar 30 2020 06:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47233 * 2 1 4 4 C 1.50703 * 109.46966 * 240.00284 * 2 1 3 5 5 N 1.30675 * 123.22061 * 60.02345 * 4 2 1 6 6 C 1.29524 * 117.62640 * 180.02562 * 5 4 2 7 7 C 1.50711 * 124.56130 * 180.02562 * 6 5 4 8 8 C 1.52997 * 109.46904 * 89.99900 * 7 6 5 9 9 N 1.46898 * 109.46634 * 180.02562 * 8 7 6 10 10 C 1.46902 * 111.00079 * 66.04938 * 9 8 7 11 11 C 1.46905 * 110.99950 * 189.99860 * 9 8 7 12 12 S 1.70880 * 110.88153 * 0.02562 * 6 5 4 13 13 C 1.38584 * 123.22302 * 239.73284 * 4 2 1 14 14 C 1.40034 * 126.25774 * 0.02562 * 13 4 2 15 15 H 1.08004 * 119.99773 * 359.97438 * 14 13 4 16 16 C 1.40072 * 120.00257 * 179.97438 * 14 13 4 17 17 N 1.30861 * 120.00134 * 0.02562 * 16 14 13 18 18 Si 1.86805 * 120.00176 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46914 * 90.00110 * 18 16 14 20 20 H 1.48499 * 109.46963 * 210.00028 * 18 16 14 21 21 H 1.48497 * 109.47030 * 330.00330 * 18 16 14 22 22 H 1.09002 * 109.47075 * 59.99068 * 1 2 3 23 23 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.46986 * 299.99797 * 1 2 3 25 25 H 1.09002 * 109.47070 * 120.00374 * 2 1 3 26 26 H 1.09004 * 109.46724 * 60.00652 * 3 2 1 27 27 H 1.09001 * 109.47194 * 179.97438 * 3 2 1 28 28 H 1.08992 * 109.47399 * 300.00166 * 3 2 1 29 29 H 1.08997 * 109.47051 * 209.99945 * 7 6 5 30 30 H 1.09002 * 109.46725 * 329.99925 * 7 6 5 31 31 H 1.08997 * 109.47303 * 299.99891 * 8 7 6 32 32 H 1.08995 * 109.47050 * 60.00372 * 8 7 6 33 33 H 1.08997 * 109.47332 * 59.99893 * 10 9 8 34 34 H 1.09004 * 109.47122 * 179.97438 * 10 9 8 35 35 H 1.08993 * 109.47080 * 299.99622 * 10 9 8 36 36 H 1.09002 * 109.46804 * 60.00073 * 11 9 8 37 37 H 1.09001 * 109.47295 * 180.02562 * 11 9 8 38 38 H 1.09002 * 109.47110 * 300.00321 * 11 9 8 39 39 H 0.96998 * 120.00193 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 7 1.7560 -0.3187 -2.4462 6 6 2.2447 -1.0109 -3.4259 7 6 2.0264 -0.7005 -4.8844 8 6 3.1312 0.2361 -5.3774 9 7 2.9180 0.5391 -6.7989 10 6 1.6876 1.3179 -6.9924 11 6 4.0782 1.2378 -7.3680 12 16 3.1703 -2.3233 -2.8422 13 6 2.8363 -1.8381 -1.1812 14 6 3.2955 -2.4778 -0.0233 15 1 3.0250 -2.0938 0.9492 16 6 4.1058 -3.6158 -0.1263 17 7 4.4340 -4.0808 -1.3047 18 14 4.7190 -4.4688 1.4183 19 1 3.7411 -5.5071 1.8317 20 1 6.0317 -5.1064 1.1437 21 1 4.8714 -3.4709 2.5074 22 1 -0.3633 0.5140 -0.8899 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 1.8934 -0.5139 0.8900 26 1 1.6768 1.9562 0.8901 27 1 3.1301 1.4425 0.0005 28 1 1.6768 1.9563 -0.8899 29 1 2.0505 -1.6256 -5.4603 30 1 1.0573 -0.2181 -5.0121 31 1 3.1071 1.1612 -4.8015 32 1 4.1002 -0.2463 -5.2497 33 1 1.7610 2.2560 -6.4423 34 1 1.5542 1.5288 -8.0535 35 1 0.8348 0.7471 -6.6251 36 1 4.9634 0.6087 -7.2736 37 1 3.8937 1.4505 -8.4210 38 1 4.2382 2.1730 -6.8314 39 1 4.9948 -4.8691 -1.3760 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082441475.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:31:37 Heat of formation + Delta-G solvation = -14.647784 kcal Electronic energy + Delta-G solvation = -18443.561507 eV Core-core repulsion = 15703.549611 eV Total energy + Delta-G solvation = -2740.011895 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.86036 -38.50966 -36.10186 -35.36650 -32.71722 -30.85313 -28.48332 -27.84783 -27.16721 -25.52231 -23.89542 -22.36065 -21.31929 -20.51103 -18.56470 -17.47493 -17.07366 -16.32436 -16.20616 -15.79988 -15.51607 -14.85114 -14.74252 -14.71590 -14.12610 -13.68615 -13.58277 -13.55773 -13.27287 -13.08877 -12.92446 -12.82991 -12.65174 -12.60874 -12.39302 -12.21019 -12.03177 -11.83184 -11.77697 -11.44711 -11.40362 -10.93005 -9.66216 -9.62328 -9.35697 -8.95148 -8.78804 -6.41648 0.69961 1.37391 1.51254 1.54519 1.58269 2.02587 2.21553 2.41848 3.01824 3.16072 3.97049 4.18709 4.24517 4.29866 4.33655 4.47761 4.49401 4.56113 4.64363 4.71926 4.77311 4.89193 4.89329 4.93376 4.97187 4.99397 5.05204 5.08487 5.11552 5.18038 5.35212 5.41727 5.56458 5.65944 5.87996 6.01808 6.12445 6.15953 6.52555 6.54370 7.94779 8.04137 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.018528 B = 0.006031 C = 0.004884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.848276 B = 4641.543940 C = 5731.974414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.009 3.991 3 C -0.121 4.121 4 C -0.157 4.157 5 N -0.436 5.436 6 C -0.187 4.187 7 C 0.009 3.991 8 C 0.080 3.920 9 N -0.557 5.557 10 C 0.023 3.977 11 C 0.024 3.976 12 S 0.098 5.902 13 C -0.029 4.029 14 C -0.394 4.394 15 H 0.105 0.895 16 C 0.012 3.988 17 N -0.800 5.800 18 Si 1.007 2.993 19 H -0.259 1.259 20 H -0.263 1.263 21 H -0.252 1.252 22 H 0.039 0.961 23 H 0.033 0.967 24 H 0.070 0.930 25 H 0.065 0.935 26 H 0.070 0.930 27 H 0.032 0.968 28 H 0.039 0.961 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.015 0.985 32 H 0.061 0.939 33 H 0.020 0.980 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.088 0.912 38 H 0.022 0.978 39 H 0.306 0.694 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.017 3.917 -2.622 4.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.012 4.012 3 C -0.178 4.178 4 C -0.291 4.291 5 N -0.148 5.148 6 C -0.457 4.457 7 C -0.032 4.032 8 C -0.049 4.049 9 N -0.282 5.282 10 C -0.125 4.125 11 C -0.124 4.124 12 S 0.350 5.650 13 C -0.152 4.152 14 C -0.430 4.430 15 H 0.123 0.877 16 C -0.207 4.207 17 N -0.426 5.426 18 Si 0.826 3.174 19 H -0.183 1.183 20 H -0.188 1.188 21 H -0.175 1.175 22 H 0.059 0.941 23 H 0.052 0.948 24 H 0.089 0.911 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.033 0.967 32 H 0.079 0.921 33 H 0.038 0.962 34 H 0.107 0.893 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.107 0.893 38 H 0.040 0.960 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 0.248 3.028 -3.797 4.863 hybrid contribution 0.121 0.710 1.549 1.708 sum 0.368 3.738 -2.248 4.377 Atomic orbital electron populations 1.21622 0.95072 1.00200 1.00963 1.19182 0.94996 0.94530 0.92531 1.21621 0.99474 0.95821 1.00930 1.20263 1.14229 1.02262 0.92392 1.65004 1.20426 1.30058 0.99297 1.26237 1.15619 1.05392 0.98476 1.19472 0.97965 0.98704 0.87087 1.21906 0.98732 0.97207 0.87092 1.62033 1.04524 1.46383 1.15217 1.22458 0.92225 0.95428 1.02384 1.22438 0.92953 0.96496 1.00468 1.83916 1.52028 1.29161 0.99893 1.23504 0.97981 0.97009 0.96738 1.19515 1.22595 1.07256 0.93662 0.87737 1.27176 0.94548 0.97050 1.01915 1.69053 1.26491 1.20438 1.26649 0.84771 0.78294 0.78369 0.76004 1.18321 1.18763 1.17524 0.94134 0.94794 0.91081 0.91682 0.91067 0.94894 0.94203 0.91443 0.91881 0.96682 0.92075 0.96166 0.89336 0.91655 0.91395 0.89316 0.95972 0.88088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.56 9.15 71.98 0.66 -3.90 16 2 C 0.01 0.36 3.22 -11.54 -0.04 0.33 16 3 C -0.12 -4.57 9.15 71.98 0.66 -3.91 16 4 C -0.16 -7.97 5.46 42.81 0.23 -7.74 16 5 N -0.44 -22.32 10.40 -176.29 -1.83 -24.16 16 6 C -0.19 -9.15 6.61 88.45 0.59 -8.56 16 7 C 0.01 0.36 5.71 29.85 0.17 0.53 16 8 C 0.08 2.92 4.94 86.30 0.43 3.34 16 9 N -0.56 -16.71 5.02 -948.85 -4.76 -21.47 16 10 C 0.02 0.60 9.32 127.69 1.19 1.79 16 11 C 0.02 0.59 9.57 127.69 1.22 1.81 16 12 S 0.10 4.99 20.23 -56.49 -1.14 3.85 16 13 C -0.03 -1.55 6.25 22.79 0.14 -1.41 16 14 C -0.39 -19.69 8.97 23.15 0.21 -19.48 16 15 H 0.10 4.90 6.49 -2.91 -0.02 4.88 16 16 C 0.01 0.55 5.50 85.28 0.47 1.02 16 17 N -0.80 -38.26 10.76 21.86 0.24 -38.02 16 18 Si 1.01 34.33 29.56 68.60 2.03 36.36 16 19 H -0.26 -8.55 7.11 99.48 0.71 -7.85 16 20 H -0.26 -8.53 7.11 99.48 0.71 -7.83 16 21 H -0.25 -8.30 7.11 99.48 0.71 -7.59 16 22 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 23 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.07 2.15 8.14 -2.39 -0.02 2.14 16 25 H 0.06 2.73 6.42 -2.39 -0.02 2.72 16 26 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 27 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 30 H 0.06 2.49 6.55 -2.39 -0.02 2.48 16 31 H 0.01 0.59 8.12 -2.39 -0.02 0.58 16 32 H 0.06 2.34 8.06 -2.39 -0.02 2.32 16 33 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.09 1.81 8.12 -2.39 -0.02 1.79 16 35 H 0.06 1.78 6.47 -2.39 -0.02 1.76 16 36 H 0.07 1.62 8.12 -2.39 -0.02 1.60 16 37 H 0.09 1.70 8.12 -2.39 -0.02 1.68 16 38 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.31 13.06 8.30 -92.71 -0.77 12.29 16 Total: -1.00 -58.66 329.19 1.47 -57.19 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: 1.01 Total: 22.44 kcal Atomic # 6 Polarization: -42.11 SS G_CDS: 5.93 Total: -36.19 kcal Atomic # 7 Polarization: -77.29 SS G_CDS: -6.36 Total: -83.65 kcal Atomic # 14 Polarization: 34.33 SS G_CDS: 2.03 Total: 36.36 kcal Atomic # 16 Polarization: 4.99 SS G_CDS: -1.14 Total: 3.85 kcal Total: -58.66 1.47 -57.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082441475.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.547 kcal (2) G-P(sol) polarization free energy of solvation -58.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds