Wall clock time and date at job start Mon Mar 30 2020 06:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.47158 * 111.00150 * 2 1 4 4 C 1.52788 * 108.56759 * 51.89863 * 3 2 1 5 5 C 1.51117 * 110.04412 * 51.03431 * 4 3 2 6 6 N 1.32098 * 117.36787 * 162.82640 * 5 4 3 7 7 C 1.33240 * 123.57604 * 179.76102 * 6 5 4 8 8 C 1.40679 * 121.33289 * 179.97438 * 7 6 5 9 9 C 1.36280 * 119.71574 * 179.97438 * 8 7 6 10 10 C 1.39105 * 121.06291 * 0.02898 * 9 8 7 11 11 C 1.36743 * 120.72651 * 0.21699 * 10 9 8 12 12 C 1.39333 * 119.58619 * 359.55437 * 11 10 9 13 13 C 1.46883 * 121.87809 * 180.15116 * 12 11 10 14 14 C 1.40530 * 121.33396 * 0.29064 * 13 12 11 15 15 H 1.08003 * 119.99891 * 224.65388 * 14 13 12 16 16 C 1.40362 * 120.00032 * 44.64239 * 14 13 12 17 17 N 1.30576 * 119.99854 * 18.32346 * 16 14 13 18 18 Si 1.86797 * 120.00115 * 198.32072 * 16 14 13 19 19 H 1.48500 * 109.47438 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47411 * 120.00373 * 18 16 14 21 21 H 1.48499 * 109.47099 * 240.00252 * 18 16 14 22 22 C 1.38139 * 120.97030 * 342.63471 * 5 4 3 23 23 C 1.46635 * 111.00264 * 122.79158 * 2 1 3 24 24 H 1.08996 * 109.47336 * 63.95222 * 1 2 3 25 25 H 1.09000 * 109.47368 * 183.95853 * 1 2 3 26 26 H 1.09003 * 109.47145 * 303.95085 * 1 2 3 27 27 H 1.09004 * 109.61869 * 292.17552 * 3 2 1 28 28 H 1.09001 * 109.77654 * 171.71635 * 3 2 1 29 29 H 1.09006 * 109.37338 * 290.86532 * 4 3 2 30 30 H 1.08994 * 109.28320 * 171.15289 * 4 3 2 31 31 H 1.07996 * 120.14349 * 359.91427 * 8 7 6 32 32 H 1.07995 * 119.46898 * 180.02562 * 9 8 7 33 33 H 1.08000 * 119.63624 * 180.02562 * 10 9 8 34 34 H 1.08001 * 120.20123 * 180.02562 * 11 10 9 35 35 H 0.97006 * 120.00128 * 183.51654 * 17 16 14 36 36 H 1.09003 * 109.25943 * 49.13135 * 23 2 1 37 37 H 1.08993 * 109.26647 * 168.61996 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9964 1.3738 0.0000 4 6 1.3364 2.1483 1.1397 5 6 1.4565 1.3724 2.4309 6 7 1.2578 2.0333 3.5573 7 6 1.3283 1.4716 4.7635 8 6 1.1084 2.2211 5.9335 9 6 1.1882 1.6129 7.1504 10 6 1.4850 0.2581 7.2576 11 6 1.7092 -0.4985 6.1408 12 6 1.6301 0.0931 4.8818 13 6 1.8583 -0.6726 3.6492 14 6 2.1621 -2.0442 3.6866 15 1 2.9532 -2.4391 3.0665 16 6 1.4374 -2.9007 4.5300 17 7 0.2784 -2.5265 5.0008 18 14 2.1311 -4.5760 4.9789 19 1 3.4500 -4.7582 4.3212 20 1 2.2967 -4.6648 6.4520 21 1 1.1984 -5.6369 4.5209 22 6 1.7585 0.0244 2.4247 23 6 1.9945 -0.7414 1.1508 24 1 -0.3634 0.4512 -0.9232 25 1 -0.3634 -1.0252 0.0709 26 1 -0.3633 0.5739 0.8525 27 1 1.7657 1.8544 -0.9508 28 1 3.0761 1.3544 0.1478 29 1 0.2826 2.3043 0.9083 30 1 1.8290 3.1142 1.2511 31 1 0.8783 3.2742 5.8676 32 1 1.0182 2.1920 8.0459 33 1 1.5421 -0.2005 8.2337 34 1 1.9387 -1.5497 6.2339 35 1 -0.1989 -3.0965 5.6240 36 1 1.4948 -1.7080 1.2144 37 1 3.0651 -0.8981 1.0192 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082469234.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:55 Heat of formation + Delta-G solvation = 47.388843 kcal Electronic energy + Delta-G solvation = -20583.477628 eV Core-core repulsion = 17710.711892 eV Total energy + Delta-G solvation = -2872.765736 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.69824 -37.96327 -35.06526 -34.75580 -31.79711 -30.65619 -29.54110 -28.37186 -26.88632 -25.78646 -24.00634 -22.31373 -21.32739 -20.55406 -19.59798 -17.51674 -16.44196 -16.09556 -15.46511 -14.96186 -14.55945 -14.11581 -14.04166 -13.34791 -13.31380 -13.00256 -12.82948 -12.54349 -12.31197 -11.81017 -11.65737 -11.43392 -11.33954 -11.28106 -11.14556 -10.90636 -10.73702 -10.52719 -10.34218 -10.13201 -9.92254 -9.33391 -8.64502 -8.11486 -7.67666 -7.39607 -7.23149 -6.80089 -4.82792 1.72332 2.15958 2.78812 2.91185 2.96301 3.35195 3.68510 3.98469 4.53054 4.62472 5.16870 5.39709 5.58409 5.63518 5.74230 5.76907 5.90494 5.94137 6.05577 6.09675 6.18092 6.30096 6.35992 6.37755 6.42506 6.46960 6.54098 6.59008 6.71398 6.78360 7.05010 7.11734 7.22908 7.32827 7.42554 7.58500 7.60102 7.70911 7.80775 7.98117 8.17583 8.40842 8.48271 9.46726 9.81415 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.014854 B = 0.009915 C = 0.006381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.506338 B = 2823.310540 C = 4387.311152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.535 5.535 3 C 0.056 3.944 4 C -0.102 4.102 5 C 0.194 3.806 6 N -0.589 5.589 7 C 0.167 3.833 8 C -0.143 4.143 9 C -0.100 4.100 10 C -0.195 4.195 11 C -0.023 4.023 12 C -0.136 4.136 13 C 0.179 3.821 14 C -0.452 4.452 15 H 0.095 0.905 16 C 0.082 3.918 17 N -0.766 5.766 18 Si 0.902 3.098 19 H -0.255 1.255 20 H -0.267 1.267 21 H -0.270 1.270 22 C -0.306 4.306 23 C 0.129 3.871 24 H 0.056 0.944 25 H 0.063 0.937 26 H 0.036 0.964 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.111 0.889 32 H 0.105 0.895 33 H 0.102 0.898 34 H 0.118 0.882 35 H 0.290 0.710 36 H 0.078 0.922 37 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.260 0.981 -2.238 2.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.257 5.257 3 C -0.073 4.073 4 C -0.141 4.141 5 C 0.051 3.949 6 N -0.304 5.304 7 C 0.045 3.955 8 C -0.162 4.162 9 C -0.120 4.120 10 C -0.214 4.214 11 C -0.042 4.042 12 C -0.140 4.140 13 C 0.170 3.830 14 C -0.482 4.482 15 H 0.113 0.887 16 C -0.140 4.140 17 N -0.389 5.389 18 Si 0.724 3.276 19 H -0.178 1.178 20 H -0.192 1.192 21 H -0.195 1.195 22 C -0.313 4.313 23 C 0.000 4.000 24 H 0.075 0.925 25 H 0.081 0.919 26 H 0.054 0.946 27 H 0.091 0.909 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.129 0.871 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.136 0.864 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.981 1.542 -2.560 3.145 hybrid contribution -0.068 -1.214 1.353 1.819 sum 0.913 0.328 -1.207 1.549 Atomic orbital electron populations 1.22354 0.88316 1.01837 1.00125 1.62829 1.07905 1.13337 1.41581 1.22136 0.99640 0.88818 0.96744 1.20989 1.01614 0.99040 0.92463 1.20391 0.92088 0.89994 0.92426 1.67240 1.26502 1.39697 0.96963 1.18479 0.95314 0.90313 0.91392 1.20467 1.05807 0.98926 0.91037 1.20492 1.00151 0.94888 0.96469 1.20581 1.08479 0.94460 0.97844 1.20839 0.93253 0.98750 0.91344 1.19915 1.06318 0.93346 0.94391 1.18682 0.83109 0.92514 0.88693 1.19465 1.15907 0.91597 1.21196 0.88703 1.25965 0.93568 1.01001 0.93470 1.69744 1.09321 1.38486 1.21398 0.86344 0.80749 0.80892 0.79579 1.17782 1.19165 1.19470 1.20816 1.19469 0.95076 0.95961 1.20559 0.98953 0.96002 0.84446 0.92482 0.91855 0.94593 0.90938 0.90893 0.90836 0.90642 0.87072 0.87669 0.87940 0.86423 0.89910 0.90407 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 8.93 60.06 0.54 0.91 16 2 N -0.54 -9.51 5.29 -244.64 -1.29 -10.81 16 3 C 0.06 0.90 6.04 -3.79 -0.02 0.88 16 4 C -0.10 -1.86 5.36 -27.79 -0.15 -2.01 16 5 C 0.19 4.46 6.02 -82.31 -0.50 3.96 16 6 N -0.59 -14.58 10.07 -7.27 -0.07 -14.65 16 7 C 0.17 4.18 6.63 -85.05 -0.56 3.61 16 8 C -0.14 -3.15 10.00 -39.37 -0.39 -3.55 16 9 C -0.10 -2.00 9.94 -39.96 -0.40 -2.40 16 10 C -0.19 -4.06 9.98 -39.80 -0.40 -4.46 16 11 C -0.02 -0.55 8.01 -39.72 -0.32 -0.86 16 12 C -0.14 -3.46 5.56 -104.71 -0.58 -4.04 16 13 C 0.18 4.48 5.41 -104.39 -0.56 3.92 16 14 C -0.45 -10.75 7.45 -37.92 -0.28 -11.04 16 15 H 0.10 2.16 7.76 -52.48 -0.41 1.75 16 16 C 0.08 1.86 3.44 -17.29 -0.06 1.80 16 17 N -0.77 -18.30 11.20 55.57 0.62 -17.67 16 18 Si 0.90 16.84 29.60 -169.99 -5.03 11.80 16 19 H -0.25 -4.70 7.11 56.52 0.40 -4.30 16 20 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 21 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 22 C -0.31 -7.15 5.43 -103.61 -0.56 -7.71 16 23 C 0.13 2.60 4.83 -5.22 -0.03 2.58 16 24 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 25 H 0.06 1.07 7.98 -51.93 -0.41 0.66 16 26 H 0.04 0.68 5.41 -51.93 -0.28 0.40 16 27 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.07 1.17 8.05 -51.93 -0.42 0.75 16 29 H 0.07 1.31 6.73 -51.93 -0.35 0.96 16 30 H 0.08 1.31 8.14 -51.93 -0.42 0.88 16 31 H 0.11 2.24 8.06 -52.49 -0.42 1.82 16 32 H 0.11 1.72 8.06 -52.49 -0.42 1.30 16 33 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 34 H 0.12 2.75 5.45 -52.49 -0.29 2.46 16 35 H 0.29 6.29 8.29 -40.82 -0.34 5.95 16 36 H 0.08 1.65 7.31 -51.93 -0.38 1.27 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 294.26 15.07 4.43 4.43 Total: -1.00 -27.10 294.26 -10.25 -37.35 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: -4.63 Total: 7.94 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -4.28 Total: -18.40 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: -0.74 Total: -43.13 kcal Atomic # 14 Polarization: 16.84 SS G_CDS: -5.03 Total: 11.80 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -27.10 -10.25 -37.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082469234.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.740 kcal (2) G-P(sol) polarization free energy of solvation -27.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds