Wall clock time and date at job start Mon Mar 30 2020 06:53:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.47158 * 111.00150 * 2 1 4 4 C 1.52788 * 108.56759 * 51.89863 * 3 2 1 5 5 C 1.51117 * 110.04412 * 51.03431 * 4 3 2 6 6 N 1.32098 * 117.36787 * 162.82640 * 5 4 3 7 7 C 1.33240 * 123.57604 * 179.76102 * 6 5 4 8 8 C 1.40679 * 121.33289 * 179.97438 * 7 6 5 9 9 C 1.36280 * 119.71574 * 179.97438 * 8 7 6 10 10 C 1.39105 * 121.06291 * 0.02898 * 9 8 7 11 11 C 1.36743 * 120.72651 * 0.21699 * 10 9 8 12 12 C 1.39333 * 119.58619 * 359.55437 * 11 10 9 13 13 C 1.46883 * 121.87809 * 180.15116 * 12 11 10 14 14 C 1.40530 * 121.33396 * 0.29064 * 13 12 11 15 15 H 1.08003 * 119.99891 * 224.65388 * 14 13 12 16 16 C 1.40362 * 120.00032 * 44.64239 * 14 13 12 17 17 N 1.30576 * 119.99854 * 18.32346 * 16 14 13 18 18 Si 1.86797 * 120.00115 * 198.32072 * 16 14 13 19 19 H 1.48500 * 109.47438 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47411 * 120.00373 * 18 16 14 21 21 H 1.48499 * 109.47099 * 240.00252 * 18 16 14 22 22 C 1.38139 * 120.97030 * 342.63471 * 5 4 3 23 23 C 1.46635 * 111.00264 * 122.79158 * 2 1 3 24 24 H 1.08996 * 109.47336 * 63.95222 * 1 2 3 25 25 H 1.09000 * 109.47368 * 183.95853 * 1 2 3 26 26 H 1.09003 * 109.47145 * 303.95085 * 1 2 3 27 27 H 1.09004 * 109.61869 * 292.17552 * 3 2 1 28 28 H 1.09001 * 109.77654 * 171.71635 * 3 2 1 29 29 H 1.09006 * 109.37338 * 290.86532 * 4 3 2 30 30 H 1.08994 * 109.28320 * 171.15289 * 4 3 2 31 31 H 1.07996 * 120.14349 * 359.91427 * 8 7 6 32 32 H 1.07995 * 119.46898 * 180.02562 * 9 8 7 33 33 H 1.08000 * 119.63624 * 180.02562 * 10 9 8 34 34 H 1.08001 * 120.20123 * 180.02562 * 11 10 9 35 35 H 0.97006 * 120.00128 * 183.51654 * 17 16 14 36 36 H 1.09003 * 109.25943 * 49.13135 * 23 2 1 37 37 H 1.08993 * 109.26647 * 168.61996 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9964 1.3738 0.0000 4 6 1.3364 2.1483 1.1397 5 6 1.4565 1.3724 2.4309 6 7 1.2578 2.0333 3.5573 7 6 1.3283 1.4716 4.7635 8 6 1.1084 2.2211 5.9335 9 6 1.1882 1.6129 7.1504 10 6 1.4850 0.2581 7.2576 11 6 1.7092 -0.4985 6.1408 12 6 1.6301 0.0931 4.8818 13 6 1.8583 -0.6726 3.6492 14 6 2.1621 -2.0442 3.6866 15 1 2.9532 -2.4391 3.0665 16 6 1.4374 -2.9007 4.5300 17 7 0.2784 -2.5265 5.0008 18 14 2.1311 -4.5760 4.9789 19 1 3.4500 -4.7582 4.3212 20 1 2.2967 -4.6648 6.4520 21 1 1.1984 -5.6369 4.5209 22 6 1.7585 0.0244 2.4247 23 6 1.9945 -0.7414 1.1508 24 1 -0.3634 0.4512 -0.9232 25 1 -0.3634 -1.0252 0.0709 26 1 -0.3633 0.5739 0.8525 27 1 1.7657 1.8544 -0.9508 28 1 3.0761 1.3544 0.1478 29 1 0.2826 2.3043 0.9083 30 1 1.8290 3.1142 1.2511 31 1 0.8783 3.2742 5.8676 32 1 1.0182 2.1920 8.0459 33 1 1.5421 -0.2005 8.2337 34 1 1.9387 -1.5497 6.2339 35 1 -0.1989 -3.0965 5.6240 36 1 1.4948 -1.7080 1.2144 37 1 3.0651 -0.8981 1.0192 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082469234.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:54 Heat of formation + Delta-G solvation = 31.375255 kcal Electronic energy + Delta-G solvation = -20584.172030 eV Core-core repulsion = 17710.711892 eV Total energy + Delta-G solvation = -2873.460138 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 268.127 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.36567 -39.54106 -36.70156 -36.49871 -33.50594 -32.24783 -31.20876 -30.00327 -28.47756 -27.43494 -25.60283 -23.93643 -22.99290 -22.31070 -21.12220 -19.25640 -18.12246 -17.70231 -17.14636 -16.46087 -16.14343 -15.67240 -15.60115 -15.01371 -14.92120 -14.61152 -14.49070 -14.16365 -13.94746 -13.41791 -13.27409 -12.93657 -12.85649 -12.83007 -12.64061 -12.39657 -12.20742 -12.15416 -11.92967 -11.77048 -11.49820 -11.04405 -10.41231 -9.87153 -9.22038 -9.11894 -8.96526 -8.54798 -6.63504 -0.02309 0.41750 1.24845 1.36413 1.50862 1.62553 2.12015 2.28310 2.79546 3.18471 3.62191 3.66555 4.11056 4.15487 4.21571 4.27489 4.29068 4.38307 4.58574 4.62455 4.71761 4.72061 4.77493 4.79910 4.89107 4.98101 5.00886 5.04852 5.08012 5.15507 5.35287 5.42116 5.55984 5.61632 5.73800 5.89911 6.01380 6.10833 6.19344 6.27697 6.43094 6.64761 6.70522 7.66966 8.13135 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.014854 B = 0.009915 C = 0.006381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.506338 B = 2823.310540 C = 4387.311152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.530 5.530 3 C 0.060 3.940 4 C -0.095 4.095 5 C 0.177 3.823 6 N -0.608 5.608 7 C 0.132 3.868 8 C -0.157 4.157 9 C -0.089 4.089 10 C -0.189 4.189 11 C -0.044 4.044 12 C -0.166 4.166 13 C 0.146 3.854 14 C -0.470 4.470 15 H 0.095 0.905 16 C 0.053 3.947 17 N -0.800 5.800 18 Si 0.970 3.030 19 H -0.252 1.252 20 H -0.259 1.259 21 H -0.265 1.265 22 C -0.323 4.323 23 C 0.139 3.861 24 H 0.091 0.909 25 H 0.056 0.944 26 H 0.010 0.990 27 H 0.111 0.889 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.126 0.874 32 H 0.150 0.850 33 H 0.135 0.865 34 H 0.112 0.888 35 H 0.296 0.704 36 H 0.061 0.939 37 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.429 1.066 -2.114 2.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.251 5.251 3 C -0.069 4.069 4 C -0.134 4.134 5 C 0.034 3.966 6 N -0.324 5.324 7 C 0.011 3.989 8 C -0.176 4.176 9 C -0.109 4.109 10 C -0.208 4.208 11 C -0.063 4.063 12 C -0.170 4.170 13 C 0.138 3.862 14 C -0.500 4.500 15 H 0.113 0.887 16 C -0.167 4.167 17 N -0.424 5.424 18 Si 0.789 3.211 19 H -0.175 1.175 20 H -0.183 1.183 21 H -0.190 1.190 22 C -0.330 4.330 23 C 0.011 3.989 24 H 0.109 0.891 25 H 0.075 0.925 26 H 0.029 0.971 27 H 0.129 0.871 28 H 0.092 0.908 29 H 0.097 0.903 30 H 0.103 0.897 31 H 0.144 0.856 32 H 0.168 0.832 33 H 0.153 0.847 34 H 0.130 0.870 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 1.149 1.642 -2.446 3.163 hybrid contribution -0.157 -1.169 1.351 1.794 sum 0.993 0.473 -1.095 1.552 Atomic orbital electron populations 1.22365 0.87736 1.01395 1.00719 1.62875 1.08335 1.14238 1.39631 1.22258 0.99436 0.87605 0.97564 1.21052 1.02331 0.99116 0.90931 1.21108 0.91235 0.90505 0.93739 1.67328 1.27367 1.40224 0.97510 1.19006 0.96413 0.90881 0.92598 1.20772 1.06108 0.99688 0.91031 1.20938 0.97836 0.94768 0.97315 1.21005 1.06481 0.94879 0.98427 1.20926 0.94714 0.98878 0.91789 1.20222 1.07499 0.93937 0.95329 1.19140 0.83969 0.93514 0.89614 1.19637 1.16355 0.91657 1.22335 0.88679 1.26685 0.93256 1.04147 0.92601 1.69792 1.10463 1.40128 1.22023 0.85336 0.79984 0.76263 0.79502 1.17508 1.18339 1.18952 1.21207 1.19333 0.95753 0.96697 1.20386 0.98926 0.95275 0.84349 0.89053 0.92506 0.97103 0.87130 0.90820 0.90268 0.89666 0.85608 0.83188 0.84674 0.87049 0.89264 0.92061 0.91763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.86 8.93 127.69 1.14 2.00 16 2 N -0.53 -18.27 5.29 -927.91 -4.91 -23.18 16 3 C 0.06 1.81 6.04 86.18 0.52 2.33 16 4 C -0.10 -3.40 5.36 29.91 0.16 -3.24 16 5 C 0.18 8.29 6.02 42.63 0.26 8.55 16 6 N -0.61 -30.81 10.07 -176.91 -1.78 -32.59 16 7 C 0.13 6.77 6.63 40.36 0.27 7.04 16 8 C -0.16 -6.84 10.00 22.41 0.22 -6.61 16 9 C -0.09 -3.38 9.94 22.02 0.22 -3.16 16 10 C -0.19 -7.62 9.98 22.13 0.22 -7.40 16 11 C -0.04 -2.11 8.01 22.18 0.18 -1.93 16 12 C -0.17 -8.71 5.56 -19.92 -0.11 -8.82 16 13 C 0.15 7.64 5.41 -19.72 -0.11 7.54 16 14 C -0.47 -23.17 7.45 23.35 0.17 -22.99 16 15 H 0.10 4.49 7.76 -2.91 -0.02 4.47 16 16 C 0.05 2.42 3.44 85.40 0.29 2.71 16 17 N -0.80 -39.04 11.20 21.90 0.25 -38.79 16 18 Si 0.97 34.55 29.60 68.60 2.03 36.58 16 19 H -0.25 -8.77 7.11 99.48 0.71 -8.07 16 20 H -0.26 -8.85 7.11 99.48 0.71 -8.14 16 21 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 22 C -0.32 -15.57 5.43 -19.21 -0.10 -15.68 16 23 C 0.14 5.75 4.83 85.54 0.41 6.17 16 24 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 25 H 0.06 1.91 7.98 -2.39 -0.02 1.89 16 26 H 0.01 0.40 5.41 -2.39 -0.01 0.39 16 27 H 0.11 2.58 8.14 -2.39 -0.02 2.56 16 28 H 0.07 2.24 8.05 -2.39 -0.02 2.22 16 29 H 0.08 2.73 6.73 -2.38 -0.02 2.72 16 30 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 31 H 0.13 4.97 8.06 -2.91 -0.02 4.94 16 32 H 0.15 4.28 8.06 -2.91 -0.02 4.26 16 33 H 0.14 4.46 8.06 -2.91 -0.02 4.44 16 34 H 0.11 5.30 5.45 -2.91 -0.02 5.29 16 35 H 0.30 13.04 8.29 -92.70 -0.77 12.27 16 36 H 0.06 2.69 7.31 -2.39 -0.02 2.68 16 37 H 0.06 2.57 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -60.70 294.26 0.41 -60.29 By element: Atomic # 1 Polarization: 30.10 SS G_CDS: 1.08 Total: 31.18 kcal Atomic # 6 Polarization: -37.23 SS G_CDS: 3.75 Total: -33.48 kcal Atomic # 7 Polarization: -88.12 SS G_CDS: -6.44 Total: -94.56 kcal Atomic # 14 Polarization: 34.55 SS G_CDS: 2.03 Total: 36.58 kcal Total: -60.70 0.41 -60.29 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082469234.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.666 kcal (2) G-P(sol) polarization free energy of solvation -60.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds