Wall clock time and date at job start Mon Mar 30 2020 06:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81404 * 102.99894 * 2 1 4 4 C 1.47195 * 109.52233 * 300.12217 * 3 2 1 5 5 N 3.64065 * 80.54661 * 323.70138 * 2 1 3 6 6 C 1.53120 * 109.51857 * 179.97438 * 3 2 1 7 7 C 1.53036 * 109.27700 * 182.37643 * 6 3 2 8 8 N 1.46850 * 109.52384 * 59.18090 * 7 6 3 9 9 C 1.46895 * 111.00333 * 174.16360 * 8 7 6 10 10 C 1.52995 * 109.47414 * 170.00269 * 9 8 7 11 11 C 1.53000 * 109.47420 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47158 * 179.97438 * 11 10 9 13 13 H 1.07996 * 120.00402 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99984 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99701 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00284 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47193 * 59.99598 * 16 14 12 18 18 H 1.48492 * 109.46993 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.46750 * 299.99796 * 16 14 12 20 20 C 1.46850 * 111.19713 * 298.26187 * 8 7 6 21 21 C 1.53034 * 109.52564 * 61.73898 * 20 8 7 22 22 H 1.08998 * 109.47004 * 299.99829 * 1 2 3 23 23 H 1.08997 * 109.46828 * 59.99992 * 1 2 3 24 24 H 1.08997 * 109.47121 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.50426 * 62.44000 * 6 3 2 26 26 H 1.08992 * 109.50741 * 302.31963 * 6 3 2 27 27 H 1.08995 * 109.46942 * 179.19622 * 7 6 3 28 28 H 1.08998 * 109.46530 * 299.16948 * 7 6 3 29 29 H 1.09001 * 109.46962 * 289.99973 * 9 8 7 30 30 H 1.09002 * 109.47442 * 49.99808 * 9 8 7 31 31 H 1.09001 * 109.46815 * 299.99794 * 10 9 8 32 32 H 1.08998 * 109.47456 * 59.99814 * 10 9 8 33 33 H 1.09001 * 109.47033 * 299.99752 * 11 10 9 34 34 H 1.09002 * 109.47364 * 59.99582 * 11 10 9 35 35 H 0.97005 * 119.99714 * 180.02562 * 15 14 12 36 36 H 1.09007 * 109.46080 * 301.72331 * 20 8 7 37 37 H 1.09001 * 109.46443 * 181.75774 * 20 8 7 38 38 H 1.09000 * 109.50225 * 180.88431 * 21 20 8 39 39 H 1.08997 * 109.50202 * 60.76419 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 6 1.6543 2.4034 -1.2000 5 7 1.2161 2.8943 -2.1260 6 6 3.7434 1.9414 0.0006 7 6 4.0814 3.4328 0.0605 8 7 3.5033 4.0186 1.2767 9 6 3.9234 5.4169 1.4386 10 6 3.1146 6.0654 2.5638 11 6 3.5525 7.5216 2.7328 12 6 2.7554 8.1605 3.8407 13 1 2.0107 7.5856 4.3710 14 6 2.9762 9.4794 4.1767 15 7 3.8828 10.1796 3.5306 16 14 1.9887 10.2712 5.5505 17 1 2.2241 9.5339 6.8178 18 1 2.4137 11.6845 5.7144 19 1 0.5435 10.2244 5.2117 20 6 2.0392 3.9056 1.2764 21 6 1.6402 2.4283 1.2527 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 4.1593 1.5104 -0.9100 26 1 4.1670 1.4371 0.8691 27 1 5.1639 3.5596 0.0756 28 1 3.6693 3.9341 -0.8152 29 1 4.9841 5.4511 1.6873 30 1 3.7506 5.9582 0.5084 31 1 2.0539 6.0311 2.3151 32 1 3.2873 5.5241 3.4940 33 1 4.6132 7.5555 2.9817 34 1 3.3801 8.0632 1.8027 35 1 4.0384 11.1074 3.7673 36 1 1.6367 4.4046 0.3948 37 1 1.6384 4.3757 2.1744 38 1 0.5535 2.3451 1.2366 39 1 2.0307 1.9317 2.1410 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000091474972.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:24 Heat of formation + Delta-G solvation = 17.520318 kcal Electronic energy + Delta-G solvation = -18244.698127 eV Core-core repulsion = 15506.081145 eV Total energy + Delta-G solvation = -2738.616982 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.75995 -36.71177 -34.77372 -33.11027 -31.53549 -30.76456 -29.22768 -27.01456 -24.89437 -23.54242 -22.49767 -21.18876 -19.76312 -17.75515 -16.90709 -16.25426 -15.38559 -15.16423 -14.93826 -14.62559 -14.49275 -14.31323 -14.00216 -13.90141 -13.50743 -13.24832 -12.73946 -12.60527 -12.37304 -12.13908 -12.02455 -11.69654 -11.44812 -11.32136 -11.23131 -10.90468 -10.82193 -10.55925 -10.42738 -10.16256 -9.66282 -9.36268 -9.07650 -8.35042 -8.23330 -8.12744 -6.00361 -4.02830 0.95123 1.87757 2.44063 2.76854 3.32942 3.37460 3.37831 3.39680 3.98363 4.24423 4.32791 4.45896 4.73995 4.76498 4.90976 5.05008 5.15628 5.27584 5.33728 5.35450 5.38786 5.41411 5.66937 5.71079 5.78053 5.85128 5.95939 6.00410 6.24312 6.63616 6.70779 7.02145 7.19652 7.24470 7.27754 7.66113 7.80773 7.99333 8.41948 9.04056 9.61242 11.11029 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.033269 B = 0.003558 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.420365 B = 7867.809202 C = 8157.706965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 S -0.205 6.205 3 C 0.066 3.934 4 C 0.208 3.792 5 N -0.412 5.412 6 C -0.088 4.088 7 C 0.054 3.946 8 N -0.534 5.534 9 C 0.056 3.944 10 C -0.113 4.113 11 C 0.022 3.978 12 C -0.520 4.520 13 H 0.054 0.946 14 C 0.056 3.944 15 N -0.896 5.896 16 Si 0.892 3.108 17 H -0.276 1.276 18 H -0.287 1.287 19 H -0.277 1.277 20 C 0.046 3.954 21 C -0.104 4.104 22 H 0.086 0.914 23 H 0.075 0.925 24 H 0.107 0.893 25 H 0.082 0.918 26 H 0.104 0.896 27 H 0.089 0.911 28 H 0.031 0.969 29 H 0.076 0.924 30 H 0.029 0.971 31 H 0.049 0.951 32 H 0.059 0.941 33 H 0.017 0.983 34 H 0.013 0.987 35 H 0.261 0.739 36 H 0.030 0.970 37 H 0.102 0.898 38 H 0.074 0.926 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.024 -20.944 -6.221 22.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S 0.025 5.975 3 C -0.047 4.047 4 C -0.112 4.112 5 N -0.088 5.088 6 C -0.128 4.128 7 C -0.076 4.076 8 N -0.258 5.258 9 C -0.071 4.071 10 C -0.150 4.150 11 C -0.015 4.015 12 C -0.559 4.559 13 H 0.073 0.927 14 C -0.145 4.145 15 N -0.535 5.535 16 Si 0.720 3.280 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.084 4.084 21 C -0.144 4.144 22 H 0.105 0.895 23 H 0.094 0.906 24 H 0.126 0.874 25 H 0.101 0.899 26 H 0.123 0.877 27 H 0.107 0.893 28 H 0.049 0.951 29 H 0.094 0.906 30 H 0.047 0.953 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.035 0.965 34 H 0.031 0.969 35 H 0.070 0.930 36 H 0.048 0.952 37 H 0.120 0.880 38 H 0.092 0.908 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.768 -21.240 -7.247 22.613 hybrid contribution -1.559 1.854 0.236 2.434 sum -4.327 -19.386 -7.011 21.064 Atomic orbital electron populations 1.23553 0.94129 1.06985 1.05586 1.86990 1.07466 1.05543 1.97453 1.20495 1.00360 0.93852 0.89997 1.28841 0.94197 0.93725 0.94449 1.81233 1.08250 1.08466 1.10835 1.21554 0.88423 0.97980 1.04803 1.22131 1.00953 0.92933 0.91586 1.62092 1.08178 1.19655 1.35899 1.22311 1.00829 0.85051 0.98918 1.21807 0.97961 0.98986 0.96282 1.19062 0.96804 0.88878 0.96796 1.21199 1.20638 0.96155 1.17881 0.92740 1.25027 0.95373 0.97427 0.96631 1.69957 1.33184 1.09136 1.41260 0.86661 0.80436 0.78312 0.82618 1.20172 1.21305 1.20295 1.22291 0.89092 0.94426 1.02547 1.22063 1.00422 0.96730 0.95186 0.89494 0.90591 0.87420 0.89949 0.87748 0.89281 0.95073 0.90586 0.95269 0.93243 0.92269 0.96461 0.96869 0.92951 0.95151 0.87971 0.90782 0.87456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.91 10.01 101.05 1.01 0.10 16 2 S -0.20 -1.76 21.28 -107.50 -2.29 -4.05 16 3 C 0.07 0.64 0.66 -93.29 -0.06 0.58 16 4 C 0.21 2.54 10.93 -20.76 -0.23 2.31 16 5 N -0.41 -6.00 18.54 42.15 0.78 -5.21 16 6 C -0.09 -0.81 4.87 -26.65 -0.13 -0.94 16 7 C 0.05 0.62 5.22 -3.83 -0.02 0.60 16 8 N -0.53 -7.21 4.81 -234.67 -1.13 -8.34 16 9 C 0.06 0.92 5.27 -3.83 -0.02 0.90 16 10 C -0.11 -2.23 4.40 -26.73 -0.12 -2.34 16 11 C 0.02 0.56 4.97 -27.88 -0.14 0.43 16 12 C -0.52 -14.62 9.11 -34.44 -0.31 -14.94 16 13 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -26.95 13.29 55.43 0.74 -26.21 16 16 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 18 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 C 0.05 0.59 4.64 -3.83 -0.02 0.57 16 21 C -0.10 -1.00 4.66 -26.65 -0.12 -1.13 16 22 H 0.09 0.51 7.08 -51.93 -0.37 0.15 16 23 H 0.08 0.58 7.81 -51.93 -0.41 0.18 16 24 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 27 H 0.09 0.93 8.12 -51.93 -0.42 0.50 16 28 H 0.03 0.40 7.31 -51.93 -0.38 0.02 16 29 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 30 H 0.03 0.51 8.08 -51.93 -0.42 0.09 16 31 H 0.05 0.96 6.21 -51.93 -0.32 0.64 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.03 0.43 7.31 -51.92 -0.38 0.05 16 37 H 0.10 1.39 5.81 -51.93 -0.30 1.09 16 38 H 0.07 0.63 6.83 -51.93 -0.35 0.28 16 39 H 0.11 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 324.73 15.07 4.89 4.89 Total: -1.00 -30.92 324.73 -8.56 -39.47 By element: Atomic # 1 Polarization: 1.51 SS G_CDS: -6.28 Total: -4.77 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -0.26 Total: -12.34 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.39 Total: -39.77 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.76 SS G_CDS: -2.29 Total: -4.05 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -30.92 -8.56 -39.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091474972.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.995 kcal (2) G-P(sol) polarization free energy of solvation -30.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds