Wall clock time and date at job start Mon Mar 30 2020 06:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81404 * 102.99894 * 2 1 4 4 C 1.47195 * 109.52233 * 300.12217 * 3 2 1 5 5 N 3.64065 * 80.54661 * 323.70138 * 2 1 3 6 6 C 1.53120 * 109.51857 * 179.97438 * 3 2 1 7 7 C 1.53036 * 109.27700 * 182.37643 * 6 3 2 8 8 N 1.46850 * 109.52384 * 59.18090 * 7 6 3 9 9 C 1.46895 * 111.00333 * 174.16360 * 8 7 6 10 10 C 1.52995 * 109.47414 * 170.00269 * 9 8 7 11 11 C 1.53000 * 109.47420 * 179.97438 * 10 9 8 12 12 C 1.50698 * 109.47158 * 179.97438 * 11 10 9 13 13 H 1.07996 * 120.00402 * 359.97438 * 12 11 10 14 14 C 1.37879 * 119.99984 * 180.02562 * 12 11 10 15 15 N 1.31519 * 119.99701 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 120.00284 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47193 * 59.99598 * 16 14 12 18 18 H 1.48492 * 109.46993 * 179.97438 * 16 14 12 19 19 H 1.48507 * 109.46750 * 299.99796 * 16 14 12 20 20 C 1.46850 * 111.19713 * 298.26187 * 8 7 6 21 21 C 1.53034 * 109.52564 * 61.73898 * 20 8 7 22 22 H 1.08998 * 109.47004 * 299.99829 * 1 2 3 23 23 H 1.08997 * 109.46828 * 59.99992 * 1 2 3 24 24 H 1.08997 * 109.47121 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.50426 * 62.44000 * 6 3 2 26 26 H 1.08992 * 109.50741 * 302.31963 * 6 3 2 27 27 H 1.08995 * 109.46942 * 179.19622 * 7 6 3 28 28 H 1.08998 * 109.46530 * 299.16948 * 7 6 3 29 29 H 1.09001 * 109.46962 * 289.99973 * 9 8 7 30 30 H 1.09002 * 109.47442 * 49.99808 * 9 8 7 31 31 H 1.09001 * 109.46815 * 299.99794 * 10 9 8 32 32 H 1.08998 * 109.47456 * 59.99814 * 10 9 8 33 33 H 1.09001 * 109.47033 * 299.99752 * 11 10 9 34 34 H 1.09002 * 109.47364 * 59.99582 * 11 10 9 35 35 H 0.97005 * 119.99714 * 180.02562 * 15 14 12 36 36 H 1.09007 * 109.46080 * 301.72331 * 20 8 7 37 37 H 1.09001 * 109.46443 * 181.75774 * 20 8 7 38 38 H 1.09000 * 109.50225 * 180.88431 * 21 20 8 39 39 H 1.08997 * 109.50202 * 60.76419 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7676 0.0000 4 6 1.6543 2.4034 -1.2000 5 7 1.2161 2.8943 -2.1260 6 6 3.7434 1.9414 0.0006 7 6 4.0814 3.4328 0.0605 8 7 3.5033 4.0186 1.2767 9 6 3.9234 5.4169 1.4386 10 6 3.1146 6.0654 2.5638 11 6 3.5525 7.5216 2.7328 12 6 2.7554 8.1605 3.8407 13 1 2.0107 7.5856 4.3710 14 6 2.9762 9.4794 4.1767 15 7 3.8828 10.1796 3.5306 16 14 1.9887 10.2712 5.5505 17 1 2.2241 9.5339 6.8178 18 1 2.4137 11.6845 5.7144 19 1 0.5435 10.2244 5.2117 20 6 2.0392 3.9056 1.2764 21 6 1.6402 2.4283 1.2527 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 -0.0005 25 1 4.1593 1.5104 -0.9100 26 1 4.1670 1.4371 0.8691 27 1 5.1639 3.5596 0.0756 28 1 3.6693 3.9341 -0.8152 29 1 4.9841 5.4511 1.6873 30 1 3.7506 5.9582 0.5084 31 1 2.0539 6.0311 2.3151 32 1 3.2873 5.5241 3.4940 33 1 4.6132 7.5555 2.9817 34 1 3.3801 8.0632 1.8027 35 1 4.0384 11.1074 3.7673 36 1 1.6367 4.4046 0.3948 37 1 1.6384 4.3757 2.1744 38 1 0.5535 2.3451 1.2366 39 1 2.0307 1.9317 2.1410 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000091474972.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:24 Heat of formation + Delta-G solvation = -1.223055 kcal Electronic energy + Delta-G solvation = -18245.510901 eV Core-core repulsion = 15506.081145 eV Total energy + Delta-G solvation = -2739.429755 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.73485 -37.84448 -36.19945 -34.83471 -32.82148 -32.06517 -29.79280 -28.62995 -26.30545 -24.49404 -24.03631 -22.34339 -21.29784 -18.59339 -18.49131 -17.71363 -16.61157 -16.31934 -16.09605 -15.96969 -15.64827 -15.41337 -15.01015 -14.71988 -14.46353 -14.26074 -13.99381 -13.81405 -13.57307 -13.45439 -13.39208 -12.95649 -12.77273 -12.53722 -12.46244 -12.36684 -12.27496 -11.98090 -11.63358 -11.45865 -11.28320 -11.14971 -10.86780 -10.53568 -9.34858 -8.82779 -8.19431 -6.30529 0.22248 1.23205 1.40754 1.43837 1.49538 1.51654 1.84821 2.41410 2.51121 2.89190 3.13993 3.43780 3.52281 3.99478 4.10774 4.20672 4.22261 4.27979 4.30639 4.33118 4.45316 4.56019 4.67474 4.69714 4.79250 4.85820 4.88683 4.99491 5.06037 5.13460 5.14789 5.26139 5.52137 5.74497 5.86037 6.01084 6.10999 6.26025 6.26852 6.86779 7.38897 8.92389 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.033269 B = 0.003558 C = 0.003432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.420365 B = 7867.809202 C = 8157.706965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 S -0.197 6.197 3 C 0.063 3.937 4 C 0.226 3.774 5 N -0.460 5.460 6 C -0.082 4.082 7 C 0.052 3.948 8 N -0.527 5.527 9 C 0.066 3.934 10 C -0.096 4.096 11 C 0.025 3.975 12 C -0.542 4.542 13 H 0.062 0.938 14 C -0.002 4.002 15 N -0.935 5.935 16 Si 0.965 3.035 17 H -0.264 1.264 18 H -0.285 1.285 19 H -0.268 1.268 20 C 0.044 3.956 21 C -0.096 4.096 22 H 0.098 0.902 23 H 0.065 0.935 24 H 0.126 0.874 25 H 0.096 0.904 26 H 0.122 0.878 27 H 0.101 0.899 28 H 0.013 0.987 29 H 0.078 0.922 30 H 0.014 0.986 31 H 0.052 0.948 32 H 0.064 0.936 33 H -0.006 1.006 34 H -0.016 1.016 35 H 0.263 0.737 36 H 0.010 0.990 37 H 0.093 0.907 38 H 0.088 0.912 39 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.805 -23.034 -4.976 23.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.303 4.303 2 S 0.033 5.967 3 C -0.050 4.050 4 C -0.094 4.094 5 N -0.137 5.137 6 C -0.121 4.121 7 C -0.077 4.077 8 N -0.251 5.251 9 C -0.062 4.062 10 C -0.134 4.134 11 C -0.013 4.013 12 C -0.580 4.580 13 H 0.081 0.919 14 C -0.200 4.200 15 N -0.576 5.576 16 Si 0.789 3.211 17 H -0.188 1.188 18 H -0.210 1.210 19 H -0.193 1.193 20 C -0.086 4.086 21 C -0.136 4.136 22 H 0.117 0.883 23 H 0.084 0.916 24 H 0.145 0.855 25 H 0.114 0.886 26 H 0.140 0.860 27 H 0.119 0.881 28 H 0.031 0.969 29 H 0.096 0.904 30 H 0.033 0.967 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.013 0.987 34 H 0.002 0.998 35 H 0.072 0.928 36 H 0.028 0.972 37 H 0.111 0.889 38 H 0.107 0.893 39 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -3.554 -23.357 -6.007 24.377 hybrid contribution -1.317 2.463 -0.186 2.799 sum -4.871 -20.894 -6.192 22.330 Atomic orbital electron populations 1.23671 0.92677 1.08297 1.05692 1.87021 1.09066 1.03249 1.97350 1.20640 1.00626 0.95030 0.88676 1.29374 0.93047 0.92600 0.94329 1.81241 1.09886 1.10067 1.12516 1.21568 0.88108 0.96115 1.06358 1.22227 1.01470 0.94318 0.89732 1.62109 1.08760 1.17140 1.37126 1.22052 1.00386 0.86832 0.96916 1.21549 0.98475 0.95534 0.97805 1.18975 0.95311 0.92227 0.94784 1.21680 1.20995 0.96818 1.18513 0.91945 1.26003 0.96459 0.98164 0.99338 1.70101 1.34882 1.09528 1.43057 0.85506 0.78965 0.77199 0.79428 1.18847 1.21017 1.19268 1.22315 0.88426 0.96706 1.01123 1.22058 1.01473 0.94278 0.95778 0.88268 0.91609 0.85539 0.88578 0.85976 0.88100 0.96867 0.90370 0.96736 0.92930 0.91758 0.98735 0.99786 0.92829 0.97201 0.88858 0.89339 0.85723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 10.01 113.37 1.14 -0.34 16 2 S -0.20 -2.83 21.28 -56.49 -1.20 -4.03 16 3 C 0.06 1.10 0.66 -12.52 -0.01 1.09 16 4 C 0.23 5.33 10.93 89.44 0.98 6.30 16 5 N -0.46 -13.44 18.54 20.00 0.37 -13.07 16 6 C -0.08 -1.31 4.87 30.65 0.15 -1.16 16 7 C 0.05 1.13 5.22 86.32 0.45 1.58 16 8 N -0.53 -13.73 4.81 -896.37 -4.31 -18.04 16 9 C 0.07 2.19 5.27 86.30 0.46 2.65 16 10 C -0.10 -3.83 4.40 30.59 0.13 -3.70 16 11 C 0.02 1.30 4.97 29.85 0.15 1.45 16 12 C -0.54 -30.80 9.11 25.60 0.23 -30.56 16 13 H 0.06 3.36 7.74 -2.91 -0.02 3.34 16 14 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 15 N -0.94 -57.40 13.29 21.45 0.28 -57.12 16 16 Si 0.96 44.16 29.54 68.60 2.03 46.19 16 17 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 18 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 19 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 20 C 0.04 1.09 4.64 86.32 0.40 1.49 16 21 C -0.10 -1.63 4.66 30.65 0.14 -1.49 16 22 H 0.10 0.86 7.08 -2.39 -0.02 0.84 16 23 H 0.06 0.89 7.81 -2.39 -0.02 0.87 16 24 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.12 1.60 8.14 -2.39 -0.02 1.59 16 27 H 0.10 1.95 8.12 -2.39 -0.02 1.93 16 28 H 0.01 0.34 7.31 -2.39 -0.02 0.32 16 29 H 0.08 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.01 0.52 8.08 -2.39 -0.02 0.50 16 31 H 0.05 2.05 6.21 -2.39 -0.01 2.04 16 32 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 33 H -0.01 -0.32 8.14 -2.39 -0.02 -0.34 16 34 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 35 H 0.26 15.19 8.31 -92.70 -0.77 14.42 16 36 H 0.01 0.28 7.31 -2.38 -0.02 0.26 16 37 H 0.09 2.46 5.81 -2.39 -0.01 2.45 16 38 H 0.09 1.28 6.83 -2.39 -0.02 1.26 16 39 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 Total: -1.00 -67.74 324.73 2.87 -64.87 By element: Atomic # 1 Polarization: 2.54 SS G_CDS: 1.02 Total: 3.56 kcal Atomic # 6 Polarization: -27.04 SS G_CDS: 4.68 Total: -22.36 kcal Atomic # 7 Polarization: -84.58 SS G_CDS: -3.65 Total: -88.23 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: -2.83 SS G_CDS: -1.20 Total: -4.03 kcal Total: -67.74 2.87 -64.87 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000091474972.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.648 kcal (2) G-P(sol) polarization free energy of solvation -67.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds