Wall clock time and date at job start Mon Mar 30 2020 06:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46508 * 109.47314 * 2 1 4 4 C 1.36931 * 120.00103 * 93.45504 * 3 2 1 5 5 H 1.08011 * 119.99663 * 214.55100 * 4 3 2 6 6 C 1.38803 * 120.00212 * 34.27362 * 4 3 2 7 7 N 1.31616 * 120.00104 * 22.09757 * 6 4 3 8 8 Si 1.86802 * 120.00302 * 202.10227 * 6 4 3 9 9 H 1.48501 * 109.47419 * 89.99500 * 8 6 4 10 10 H 1.48496 * 109.47430 * 210.00128 * 8 6 4 11 11 H 1.48501 * 109.46955 * 329.99982 * 8 6 4 12 12 C 1.46504 * 119.99564 * 273.45943 * 3 2 1 13 13 C 1.50701 * 109.46748 * 269.99376 * 12 3 2 14 14 C 1.33638 * 126.03630 * 90.02813 * 13 12 3 15 15 N 1.31785 * 114.50285 * 180.02562 * 14 13 12 16 16 C 1.29026 * 117.12342 * 359.97438 * 15 14 13 17 17 C 1.50703 * 124.91864 * 180.02562 * 16 15 14 18 18 C 1.52995 * 109.47150 * 89.97178 * 17 16 15 19 19 C 1.52999 * 109.47454 * 65.00503 * 18 17 16 20 20 C 1.53003 * 109.46884 * 185.00138 * 18 17 16 21 21 S 1.70982 * 110.16467 * 359.72367 * 16 15 14 22 22 H 1.09008 * 109.47187 * 59.99956 * 1 2 3 23 23 H 1.08994 * 109.47183 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47066 * 300.00132 * 1 2 3 25 25 H 1.08994 * 109.47219 * 239.99828 * 2 1 3 26 26 H 1.09001 * 109.47433 * 119.99734 * 2 1 3 27 27 H 0.97003 * 120.00473 * 179.97438 * 7 6 4 28 28 H 1.08997 * 109.47295 * 29.99614 * 12 3 2 29 29 H 1.08992 * 109.47062 * 150.00099 * 12 3 2 30 30 H 1.07997 * 122.75083 * 359.97438 * 14 13 12 31 31 H 1.08998 * 109.46902 * 209.97617 * 17 16 15 32 32 H 1.09005 * 109.46666 * 329.96956 * 17 16 15 33 33 H 1.08995 * 109.47523 * 305.00171 * 18 17 16 34 34 H 1.09003 * 109.47193 * 59.99131 * 19 18 17 35 35 H 1.08996 * 109.47594 * 179.97438 * 19 18 17 36 36 H 1.09011 * 109.46701 * 299.99942 * 19 18 17 37 37 H 1.09002 * 109.46984 * 59.99699 * 20 18 17 38 38 H 1.09000 * 109.47066 * 179.97438 * 20 18 17 39 39 H 1.09004 * 109.46964 * 299.99752 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3140 2.0030 1.1837 5 1 2.1318 3.0614 1.2979 6 6 2.8423 1.2718 2.2386 7 7 3.4580 0.1320 2.0062 8 14 2.6795 1.9055 3.9883 9 1 1.4219 1.3900 4.5866 10 1 3.8375 1.4402 4.7931 11 1 2.6497 3.3901 3.9763 12 6 2.1904 2.0973 -1.2665 13 6 3.5865 1.8701 -1.7863 14 6 3.9721 0.8803 -2.5972 15 7 5.2520 0.8978 -2.9106 16 6 5.9674 1.8475 -2.4096 17 6 7.4431 2.0353 -2.6511 18 6 7.6499 2.9234 -3.8796 19 6 7.1053 4.3243 -3.5938 20 6 9.1437 3.0124 -4.1988 21 16 4.9971 2.8671 -1.4388 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 3.8275 -0.3789 2.7434 28 1 1.4673 1.7281 -1.9937 29 1 2.0317 3.1635 -1.1055 30 1 3.2909 0.1273 -2.9649 31 1 7.8964 2.5085 -1.7801 32 1 7.9097 1.0650 -2.8213 33 1 7.1214 2.4947 -4.7310 34 1 7.6338 4.7529 -2.7423 35 1 7.2530 4.9571 -4.4689 36 1 6.0410 4.2608 -3.3663 37 1 9.5318 2.0143 -4.4024 38 1 9.2910 3.6447 -5.0744 39 1 9.6722 3.4411 -3.3474 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092399262.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:17 Heat of formation + Delta-G solvation = 40.008414 kcal Electronic energy + Delta-G solvation = -18522.455507 eV Core-core repulsion = 15784.813683 eV Total energy + Delta-G solvation = -2737.641825 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.98413 -36.49103 -35.80111 -31.97926 -30.90639 -29.33131 -27.60804 -27.14915 -24.91287 -23.67008 -22.69501 -20.47226 -20.25981 -18.41124 -17.24911 -16.67622 -15.11920 -14.97926 -14.61274 -14.35112 -14.04293 -13.66219 -13.63924 -13.13616 -12.73405 -12.36873 -12.30275 -12.18772 -11.98059 -11.52391 -11.44811 -11.30708 -10.99822 -10.91719 -10.80046 -10.71301 -10.61865 -10.35949 -10.12873 -9.96238 -9.68499 -8.88894 -8.59511 -8.33924 -7.93803 -6.76732 -5.90486 -3.42611 1.53685 2.20610 2.65707 3.30722 3.38409 3.39116 3.61829 4.39854 4.66408 4.93384 4.97115 5.21742 5.24051 5.46922 5.56572 5.60898 5.69535 5.80448 5.90423 5.95857 5.96753 6.03633 6.05282 6.19854 6.24230 6.33441 6.38360 6.39724 6.50858 6.61305 6.71310 6.82342 7.00006 7.19957 7.65995 7.71971 8.37347 8.51954 9.04858 9.66506 10.22983 11.08737 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.023169 B = 0.005569 C = 0.004963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.234367 B = 5026.834421 C = 5640.539756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.136 3.864 3 N -0.566 5.566 4 C -0.258 4.258 5 H 0.066 0.934 6 C 0.014 3.986 7 N -0.877 5.877 8 Si 0.900 3.100 9 H -0.284 1.284 10 H -0.290 1.290 11 H -0.276 1.276 12 C 0.206 3.794 13 C -0.182 4.182 14 C -0.001 4.001 15 N -0.470 5.470 16 C 0.006 3.994 17 C -0.030 4.030 18 C -0.089 4.089 19 C -0.155 4.155 20 C -0.145 4.145 21 S 0.117 5.883 22 H 0.034 0.966 23 H 0.036 0.964 24 H 0.050 0.950 25 H 0.022 0.978 26 H 0.099 0.901 27 H 0.257 0.743 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.159 0.841 31 H 0.077 0.923 32 H 0.084 0.916 33 H 0.073 0.927 34 H 0.055 0.945 35 H 0.053 0.947 36 H 0.061 0.939 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.883 5.177 -9.203 11.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.011 3.989 3 N -0.285 5.285 4 C -0.388 4.388 5 H 0.084 0.916 6 C -0.188 4.188 7 N -0.517 5.517 8 Si 0.729 3.271 9 H -0.211 1.211 10 H -0.216 1.216 11 H -0.201 1.201 12 C 0.077 3.923 13 C -0.307 4.307 14 C -0.152 4.152 15 N -0.184 5.184 16 C -0.272 4.272 17 C -0.071 4.071 18 C -0.109 4.109 19 C -0.212 4.212 20 C -0.202 4.202 21 S 0.371 5.629 22 H 0.053 0.947 23 H 0.055 0.945 24 H 0.069 0.931 25 H 0.041 0.959 26 H 0.116 0.884 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.176 0.824 31 H 0.096 0.904 32 H 0.102 0.898 33 H 0.092 0.908 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 5.388 5.542 -8.819 11.726 hybrid contribution -0.538 -0.703 0.762 1.168 sum 4.850 4.839 -8.056 10.575 Atomic orbital electron populations 1.22278 1.00398 0.98901 1.00536 1.21004 0.89998 0.85889 1.02027 1.44264 1.71856 1.12280 1.00052 1.19155 1.36575 0.94524 0.88594 0.91638 1.25193 0.96410 0.97742 0.99414 1.70002 1.35070 1.15733 1.30945 0.86338 0.77419 0.78824 0.84544 1.21121 1.21616 1.20058 1.19689 0.86437 0.97287 0.88928 1.27581 1.02859 0.99592 1.00683 1.21283 0.91200 1.00534 1.02176 1.66069 1.05672 1.22467 1.24238 1.26513 1.01057 0.98001 1.01585 1.20168 0.87585 1.01010 0.98351 1.21073 0.96360 0.95796 0.97688 1.21989 1.01966 0.95928 1.01339 1.21826 0.95365 1.01688 1.01341 1.83759 1.01739 1.30080 1.47323 0.94733 0.94514 0.93123 0.95940 0.88353 0.93300 0.92175 0.92546 0.82394 0.90420 0.89793 0.90821 0.92566 0.92792 0.91993 0.92623 0.92680 0.92611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 10.24 37.16 0.38 -2.79 16 2 C 0.14 3.15 5.98 -4.04 -0.02 3.13 16 3 N -0.57 -13.56 2.43 -174.61 -0.42 -13.99 16 4 C -0.26 -6.75 9.49 -15.07 -0.14 -6.89 16 5 H 0.07 1.71 7.92 -52.48 -0.42 1.29 16 6 C 0.01 0.38 4.94 -17.44 -0.09 0.29 16 7 N -0.88 -24.74 11.33 55.49 0.63 -24.11 16 8 Si 0.90 21.05 29.61 -169.99 -5.03 16.02 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 12 C 0.21 4.24 6.21 -5.19 -0.03 4.21 16 13 C -0.18 -3.77 6.18 -35.92 -0.22 -3.99 16 14 C 0.00 -0.03 11.25 -19.18 -0.22 -0.24 16 15 N -0.47 -9.55 10.54 -11.86 -0.13 -9.67 16 16 C 0.01 0.11 6.02 -13.45 -0.08 0.03 16 17 C -0.03 -0.43 5.27 -27.88 -0.15 -0.58 16 18 C -0.09 -1.07 2.91 -90.62 -0.26 -1.34 16 19 C -0.15 -1.80 8.89 37.16 0.33 -1.47 16 20 C -0.14 -1.39 9.19 37.16 0.34 -1.04 16 21 S 0.12 2.24 21.62 -107.50 -2.32 -0.08 16 22 H 0.03 0.62 8.14 -51.92 -0.42 0.19 16 23 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 24 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.02 0.50 8.10 -51.93 -0.42 0.08 16 26 H 0.10 2.60 5.33 -51.93 -0.28 2.32 16 27 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 28 H 0.06 1.11 8.07 -51.93 -0.42 0.69 16 29 H 0.06 1.12 8.04 -51.93 -0.42 0.71 16 30 H 0.16 3.00 8.06 -52.49 -0.42 2.58 16 31 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 32 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.82 6.12 -51.92 -0.32 0.51 16 37 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 332.93 15.07 5.02 5.02 Total: -1.00 -28.90 332.93 -8.90 -37.80 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -6.48 Total: -0.30 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -0.16 Total: -10.68 kcal Atomic # 7 Polarization: -47.85 SS G_CDS: 0.08 Total: -47.77 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Atomic # 16 Polarization: 2.24 SS G_CDS: -2.32 Total: -0.08 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -28.90 -8.90 -37.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092399262.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.808 kcal (2) G-P(sol) polarization free energy of solvation -28.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds