Wall clock time and date at job start Mon Mar 30 2020 06:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46508 * 109.47314 * 2 1 4 4 C 1.36931 * 120.00103 * 93.45504 * 3 2 1 5 5 H 1.08011 * 119.99663 * 214.55100 * 4 3 2 6 6 C 1.38803 * 120.00212 * 34.27362 * 4 3 2 7 7 N 1.31616 * 120.00104 * 22.09757 * 6 4 3 8 8 Si 1.86802 * 120.00302 * 202.10227 * 6 4 3 9 9 H 1.48501 * 109.47419 * 89.99500 * 8 6 4 10 10 H 1.48496 * 109.47430 * 210.00128 * 8 6 4 11 11 H 1.48501 * 109.46955 * 329.99982 * 8 6 4 12 12 C 1.46504 * 119.99564 * 273.45943 * 3 2 1 13 13 C 1.50701 * 109.46748 * 269.99376 * 12 3 2 14 14 C 1.33638 * 126.03630 * 90.02813 * 13 12 3 15 15 N 1.31785 * 114.50285 * 180.02562 * 14 13 12 16 16 C 1.29026 * 117.12342 * 359.97438 * 15 14 13 17 17 C 1.50703 * 124.91864 * 180.02562 * 16 15 14 18 18 C 1.52995 * 109.47150 * 89.97178 * 17 16 15 19 19 C 1.52999 * 109.47454 * 65.00503 * 18 17 16 20 20 C 1.53003 * 109.46884 * 185.00138 * 18 17 16 21 21 S 1.70982 * 110.16467 * 359.72367 * 16 15 14 22 22 H 1.09008 * 109.47187 * 59.99956 * 1 2 3 23 23 H 1.08994 * 109.47183 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.47066 * 300.00132 * 1 2 3 25 25 H 1.08994 * 109.47219 * 239.99828 * 2 1 3 26 26 H 1.09001 * 109.47433 * 119.99734 * 2 1 3 27 27 H 0.97003 * 120.00473 * 179.97438 * 7 6 4 28 28 H 1.08997 * 109.47295 * 29.99614 * 12 3 2 29 29 H 1.08992 * 109.47062 * 150.00099 * 12 3 2 30 30 H 1.07997 * 122.75083 * 359.97438 * 14 13 12 31 31 H 1.08998 * 109.46902 * 209.97617 * 17 16 15 32 32 H 1.09005 * 109.46666 * 329.96956 * 17 16 15 33 33 H 1.08995 * 109.47523 * 305.00171 * 18 17 16 34 34 H 1.09003 * 109.47193 * 59.99131 * 19 18 17 35 35 H 1.08996 * 109.47594 * 179.97438 * 19 18 17 36 36 H 1.09011 * 109.46701 * 299.99942 * 19 18 17 37 37 H 1.09002 * 109.46984 * 59.99699 * 20 18 17 38 38 H 1.09000 * 109.47066 * 179.97438 * 20 18 17 39 39 H 1.09004 * 109.46964 * 299.99752 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.3140 2.0030 1.1837 5 1 2.1318 3.0614 1.2979 6 6 2.8423 1.2718 2.2386 7 7 3.4580 0.1320 2.0062 8 14 2.6795 1.9055 3.9883 9 1 1.4219 1.3900 4.5866 10 1 3.8375 1.4402 4.7931 11 1 2.6497 3.3901 3.9763 12 6 2.1904 2.0973 -1.2665 13 6 3.5865 1.8701 -1.7863 14 6 3.9721 0.8803 -2.5972 15 7 5.2520 0.8978 -2.9106 16 6 5.9674 1.8475 -2.4096 17 6 7.4431 2.0353 -2.6511 18 6 7.6499 2.9234 -3.8796 19 6 7.1053 4.3243 -3.5938 20 6 9.1437 3.0124 -4.1988 21 16 4.9971 2.8671 -1.4388 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 1.8933 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 3.8275 -0.3789 2.7434 28 1 1.4673 1.7281 -1.9937 29 1 2.0317 3.1635 -1.1055 30 1 3.2909 0.1273 -2.9649 31 1 7.8964 2.5085 -1.7801 32 1 7.9097 1.0650 -2.8213 33 1 7.1214 2.4947 -4.7310 34 1 7.6338 4.7529 -2.7423 35 1 7.2530 4.9571 -4.4689 36 1 6.0410 4.2608 -3.3663 37 1 9.5318 2.0143 -4.4024 38 1 9.2910 3.6447 -5.0744 39 1 9.6722 3.4411 -3.3474 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092399262.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:16 Heat of formation + Delta-G solvation = 25.366748 kcal Electronic energy + Delta-G solvation = -18523.090418 eV Core-core repulsion = 15784.813683 eV Total energy + Delta-G solvation = -2738.276735 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.51793 -37.99664 -37.14440 -33.82520 -32.54324 -30.84603 -29.14406 -28.00657 -26.61312 -25.33017 -24.23061 -22.20469 -21.41914 -19.87820 -18.77062 -18.55368 -16.90509 -16.29557 -16.08385 -15.74071 -15.54740 -15.41723 -14.93815 -14.60529 -14.21000 -13.95927 -13.45214 -13.42456 -13.25465 -13.05781 -12.92750 -12.76856 -12.66040 -12.45034 -12.13076 -12.04982 -11.95246 -11.79301 -11.64601 -11.56157 -11.49761 -10.58144 -10.41021 -9.90899 -9.48347 -8.68363 -7.87187 -5.44243 0.00099 0.67883 1.09602 1.44979 1.47757 1.54976 2.04258 2.49397 3.22893 3.34745 3.72249 3.95103 3.99739 4.13415 4.33517 4.43515 4.47286 4.55020 4.66034 4.73841 4.78113 4.84513 4.92383 4.93085 4.97258 5.03945 5.09017 5.12127 5.15707 5.25868 5.40932 5.47842 5.49224 5.50342 5.63857 5.85393 6.40920 6.96211 7.10793 7.78378 8.30415 9.09454 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.023169 B = 0.005569 C = 0.004963 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.234367 B = 5026.834421 C = 5640.539756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.136 3.864 3 N -0.582 5.582 4 C -0.261 4.261 5 H 0.062 0.938 6 C -0.031 4.031 7 N -0.912 5.912 8 Si 0.954 3.046 9 H -0.284 1.284 10 H -0.297 1.297 11 H -0.267 1.267 12 C 0.208 3.792 13 C -0.207 4.207 14 C -0.003 4.003 15 N -0.496 5.496 16 C 0.022 3.978 17 C -0.035 4.035 18 C -0.083 4.083 19 C -0.155 4.155 20 C -0.140 4.140 21 S 0.121 5.879 22 H 0.052 0.948 23 H 0.056 0.944 24 H 0.036 0.964 25 H 0.022 0.978 26 H 0.065 0.935 27 H 0.250 0.750 28 H 0.081 0.919 29 H 0.060 0.940 30 H 0.168 0.832 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.040 0.960 37 H 0.058 0.942 38 H 0.068 0.932 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.557 6.172 -10.138 13.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.011 3.989 3 N -0.301 5.301 4 C -0.391 4.391 5 H 0.080 0.920 6 C -0.229 4.229 7 N -0.555 5.555 8 Si 0.782 3.218 9 H -0.211 1.211 10 H -0.223 1.223 11 H -0.191 1.191 12 C 0.080 3.920 13 C -0.332 4.332 14 C -0.153 4.153 15 N -0.211 5.211 16 C -0.256 4.256 17 C -0.075 4.075 18 C -0.103 4.103 19 C -0.212 4.212 20 C -0.197 4.197 21 S 0.375 5.625 22 H 0.071 0.929 23 H 0.075 0.925 24 H 0.055 0.945 25 H 0.040 0.960 26 H 0.083 0.917 27 H 0.060 0.940 28 H 0.100 0.900 29 H 0.078 0.922 30 H 0.185 0.815 31 H 0.109 0.891 32 H 0.107 0.893 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.059 0.941 37 H 0.078 0.922 38 H 0.087 0.913 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.044 6.562 -9.768 13.229 hybrid contribution -0.669 -0.964 0.878 1.466 sum 5.375 5.598 -8.889 11.800 Atomic orbital electron populations 1.22100 0.97647 1.00322 1.00644 1.20910 0.92129 0.85532 1.00342 1.44329 1.72724 1.12396 1.00637 1.19296 1.35584 0.94369 0.89880 0.92043 1.25771 0.96747 0.98113 1.02316 1.70141 1.36991 1.17140 1.31227 0.85484 0.76825 0.78647 0.80858 1.21077 1.22329 1.19145 1.19694 0.87046 0.97162 0.88098 1.27500 1.03392 1.00349 1.01959 1.21538 0.91642 1.00391 1.01751 1.66149 1.05829 1.23568 1.25512 1.27276 1.02492 0.96312 0.99518 1.20437 0.84835 1.02091 1.00181 1.21032 0.98225 0.95238 0.95829 1.21993 1.00613 0.96079 1.02543 1.21788 0.93159 1.02416 1.02338 1.83688 1.01458 1.30097 1.47219 0.92943 0.92470 0.94526 0.95975 0.91689 0.94026 0.90050 0.92161 0.81493 0.89078 0.89345 0.92064 0.91713 0.91049 0.94067 0.92244 0.91291 0.91683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.62 10.24 71.98 0.74 -4.88 16 2 C 0.14 6.31 5.98 86.38 0.52 6.83 16 3 N -0.58 -27.78 2.43 -706.34 -1.72 -29.50 16 4 C -0.26 -13.67 9.49 84.03 0.80 -12.87 16 5 H 0.06 3.21 7.92 -2.91 -0.02 3.18 16 6 C -0.03 -1.69 4.94 84.86 0.42 -1.27 16 7 N -0.91 -52.58 11.33 21.65 0.25 -52.33 16 8 Si 0.95 43.67 29.61 68.60 2.03 45.70 16 9 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 10 H -0.30 -13.77 7.11 99.48 0.71 -13.07 16 11 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 12 C 0.21 8.44 6.21 85.63 0.53 8.97 16 13 C -0.21 -8.49 6.18 24.64 0.15 -8.34 16 14 C 0.00 -0.12 11.25 83.66 0.94 0.82 16 15 N -0.50 -19.80 10.54 -191.44 -2.02 -21.82 16 16 C 0.02 0.78 6.02 88.52 0.53 1.31 16 17 C -0.03 -0.93 5.27 29.85 0.16 -0.77 16 18 C -0.08 -1.82 2.91 -10.79 -0.03 -1.85 16 19 C -0.15 -3.27 8.89 71.98 0.64 -2.63 16 20 C -0.14 -2.25 9.19 71.98 0.66 -1.59 16 21 S 0.12 4.55 21.62 -56.49 -1.22 3.33 16 22 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 23 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.02 0.99 8.10 -2.39 -0.02 0.97 16 26 H 0.07 3.51 5.33 -2.39 -0.01 3.50 16 27 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 28 H 0.08 2.89 8.07 -2.39 -0.02 2.87 16 29 H 0.06 2.36 8.04 -2.39 -0.02 2.34 16 30 H 0.17 6.26 8.06 -2.91 -0.02 6.23 16 31 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 32 H 0.09 2.34 8.14 -2.38 -0.02 2.32 16 33 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.04 1.03 6.12 -2.38 -0.01 1.02 16 37 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 Total: -1.00 -61.71 332.93 4.38 -57.33 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 1.00 Total: 13.56 kcal Atomic # 6 Polarization: -22.32 SS G_CDS: 6.06 Total: -16.26 kcal Atomic # 7 Polarization: -100.16 SS G_CDS: -3.49 Total: -103.65 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Atomic # 16 Polarization: 4.55 SS G_CDS: -1.22 Total: 3.33 kcal Total: -61.71 4.38 -57.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092399262.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.698 kcal (2) G-P(sol) polarization free energy of solvation -61.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds