Wall clock time and date at job start Mon Mar 30 2020 06:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46901 * 111.00083 * 2 1 4 4 C 1.50695 * 109.47260 * 66.04638 * 3 2 1 5 5 H 1.07997 * 119.99855 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99838 * 179.97438 * 4 3 2 7 7 N 1.31515 * 120.00210 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 120.00059 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.46733 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47037 * 120.00175 * 8 6 4 11 11 H 1.48496 * 109.47402 * 240.00227 * 8 6 4 12 12 C 1.46904 * 110.99824 * 236.04538 * 2 1 3 13 13 C 1.50703 * 109.46778 * 293.95294 * 12 2 1 14 14 N 1.29029 * 124.91289 * 90.28889 * 13 12 2 15 15 C 1.31775 * 117.12190 * 180.22592 * 14 13 12 16 16 C 1.50698 * 122.75221 * 179.74824 * 15 14 13 17 17 C 1.53006 * 109.47184 * 254.71032 * 16 15 14 18 18 C 1.52997 * 109.47342 * 134.70807 * 16 15 14 19 19 C 1.52999 * 109.47150 * 14.70475 * 16 15 14 20 20 C 1.33648 * 114.50219 * 359.47706 * 15 14 13 21 21 S 1.70972 * 124.91750 * 269.97512 * 13 12 2 22 22 H 1.08995 * 109.47402 * 183.95669 * 1 2 3 23 23 H 1.09003 * 109.47126 * 303.95653 * 1 2 3 24 24 H 1.09006 * 109.47208 * 63.95400 * 1 2 3 25 25 H 1.09003 * 109.47070 * 186.05035 * 3 2 1 26 26 H 1.09006 * 109.46875 * 306.04017 * 3 2 1 27 27 H 0.96996 * 120.00041 * 179.97438 * 7 6 4 28 28 H 1.09001 * 109.46994 * 173.95530 * 12 2 1 29 29 H 1.08994 * 109.47232 * 53.95419 * 12 2 1 30 30 H 1.09001 * 109.47002 * 299.99404 * 17 16 15 31 31 H 1.08993 * 109.46955 * 59.99842 * 17 16 15 32 32 H 1.09000 * 109.47050 * 179.97438 * 17 16 15 33 33 H 1.09000 * 109.47140 * 180.02562 * 18 16 15 34 34 H 1.09001 * 109.47230 * 299.99432 * 18 16 15 35 35 H 1.09001 * 109.47375 * 60.00270 * 18 16 15 36 36 H 1.09001 * 109.47362 * 300.00765 * 19 16 15 37 37 H 1.09002 * 109.46716 * 60.00124 * 19 16 15 38 38 H 1.09000 * 109.47486 * 180.02562 * 19 16 15 39 39 H 1.07999 * 126.03855 * 180.27226 * 20 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 1 1.0740 1.5115 2.0484 6 6 2.0278 3.3491 1.5288 7 7 2.7138 4.0012 0.6157 8 14 1.5828 4.1870 3.1380 9 1 0.8147 3.2447 3.9908 10 1 2.8243 4.5935 3.8442 11 1 0.7563 5.3886 2.8585 12 6 1.9954 -0.7660 -1.1376 13 6 1.6368 -2.2205 -0.9728 14 7 0.5609 -2.7715 -1.4239 15 6 0.4001 -4.0578 -1.1873 16 6 -0.8102 -4.8269 -1.6506 17 6 -1.7267 -5.1032 -0.4569 18 6 -0.3654 -6.1534 -2.2698 19 6 -1.5677 -4.0050 -2.6954 20 6 1.4010 -4.6258 -0.5078 21 16 2.6004 -3.3808 -0.1675 22 1 -0.3634 -1.0251 0.0709 23 1 -0.3633 0.5740 0.8524 24 1 -0.3634 0.4513 -0.9233 25 1 3.0798 1.3444 -0.1083 26 1 1.5612 1.9273 -0.8310 27 1 2.9884 4.9173 0.7776 28 1 3.0797 -0.6612 -1.1756 29 1 1.5611 -0.3873 -2.0628 30 1 -1.1871 -5.6889 0.2875 31 1 -2.0436 -4.1583 -0.0158 32 1 -2.6023 -5.6591 -0.7921 33 1 -1.2408 -6.7095 -2.6053 34 1 0.2874 -5.9566 -3.1203 35 1 0.1742 -6.7390 -1.5255 36 1 -1.8846 -3.0599 -2.2542 37 1 -0.9148 -3.8081 -3.5458 38 1 -2.4434 -4.5610 -3.0302 39 1 1.4635 -5.6644 -0.2183 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094966439.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:29 Heat of formation + Delta-G solvation = 34.765240 kcal Electronic energy + Delta-G solvation = -18364.392511 eV Core-core repulsion = 15626.523325 eV Total energy + Delta-G solvation = -2737.869186 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.12726 -36.97489 -35.69538 -32.60960 -30.29185 -28.21980 -27.36808 -27.06096 -26.71850 -24.68994 -23.22853 -20.93501 -19.98860 -18.88898 -17.13094 -16.33822 -15.61249 -15.24256 -14.70741 -14.41186 -14.20059 -14.04767 -13.80689 -13.24162 -13.12992 -12.38472 -12.32352 -12.18188 -11.97926 -11.88060 -11.72776 -11.50268 -11.13510 -11.00976 -10.92187 -10.85383 -10.70679 -10.66836 -10.48162 -9.93640 -9.39684 -9.19585 -9.13585 -8.51442 -8.43740 -7.33744 -6.04450 -4.05601 0.95273 1.64258 2.04373 2.99671 3.30888 3.38319 3.43567 4.15874 4.42687 4.72710 4.86529 4.91612 5.13394 5.23946 5.31907 5.37297 5.46129 5.47681 5.60865 5.66286 5.76829 5.84435 5.88729 5.94414 6.01568 6.02375 6.21953 6.26872 6.33818 6.39847 6.48249 6.81904 7.20582 7.29407 7.75873 7.98048 8.04632 8.14801 8.48109 9.01874 9.58615 11.06553 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.031351 B = 0.004169 C = 0.004018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.905553 B = 6714.917722 C = 6967.528624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.534 5.534 3 C 0.193 3.807 4 C -0.506 4.506 5 H 0.064 0.936 6 C 0.056 3.944 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.123 3.877 13 C 0.083 3.917 14 N -0.471 5.471 15 C 0.083 3.917 16 C 0.006 3.994 17 C -0.137 4.137 18 C -0.137 4.137 19 C -0.128 4.128 20 C -0.279 4.279 21 S 0.132 5.868 22 H 0.048 0.952 23 H 0.073 0.927 24 H 0.014 0.986 25 H 0.032 0.968 26 H -0.005 1.005 27 H 0.261 0.739 28 H 0.089 0.911 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.065 0.935 37 H 0.055 0.945 38 H 0.050 0.950 39 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.451 -19.096 -5.039 20.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.259 5.259 3 C 0.068 3.932 4 C -0.545 4.545 5 H 0.083 0.917 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.211 1.211 12 C -0.008 4.008 13 C -0.196 4.196 14 N -0.186 5.186 15 C -0.051 4.051 16 C 0.003 3.997 17 C -0.194 4.194 18 C -0.195 4.195 19 C -0.186 4.186 20 C -0.419 4.419 21 S 0.388 5.612 22 H 0.067 0.933 23 H 0.092 0.908 24 H 0.033 0.967 25 H 0.050 0.950 26 H 0.013 0.987 27 H 0.071 0.929 28 H 0.108 0.892 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -3.570 -18.755 -4.407 19.594 hybrid contribution -1.099 0.484 -0.111 1.206 sum -4.668 -18.271 -4.518 19.392 Atomic orbital electron populations 1.22208 0.88095 1.00035 1.00481 1.62181 1.07833 1.17902 1.37998 1.19782 0.95457 0.80868 0.97058 1.21162 1.34803 0.96924 1.01568 0.91746 1.24978 0.95258 0.97295 0.97031 1.69964 1.38358 1.11447 1.34038 0.86434 0.78170 0.79310 0.83483 1.19650 1.20979 1.21093 1.20664 1.00525 0.84553 0.95080 1.27150 0.93008 1.01506 0.97897 1.66149 1.19992 1.09815 1.22662 1.20074 0.96942 0.89313 0.98723 1.19123 0.90856 0.93771 0.95951 1.21873 0.98707 1.01963 0.96899 1.21906 1.01329 0.95576 1.00702 1.21691 0.98948 0.99932 0.97998 1.26682 0.99866 1.04393 1.10920 1.84007 1.23911 1.00146 1.53167 0.93300 0.90824 0.96716 0.95007 0.98733 0.92939 0.89236 0.92598 0.92594 0.92214 0.92118 0.92060 0.92480 0.92518 0.91616 0.92634 0.93059 0.81397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.84 9.17 60.06 0.55 1.39 16 2 N -0.53 -11.71 4.74 -245.82 -1.17 -12.87 16 3 C 0.19 4.99 4.72 -4.98 -0.02 4.97 16 4 C -0.51 -14.17 8.46 -34.44 -0.29 -14.47 16 5 H 0.06 1.80 7.12 -52.49 -0.37 1.43 16 6 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -26.51 13.29 55.43 0.74 -25.78 16 8 Si 0.90 21.62 29.54 -169.99 -5.02 16.60 16 9 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 12 C 0.12 2.28 5.54 -4.97 -0.03 2.25 16 13 C 0.08 1.39 6.04 -13.45 -0.08 1.31 16 14 N -0.47 -7.73 8.78 -8.06 -0.07 -7.80 16 15 C 0.08 1.15 5.41 -84.23 -0.46 0.69 16 16 C 0.01 0.07 0.90 -155.66 -0.14 -0.07 16 17 C -0.14 -1.39 8.43 37.16 0.31 -1.07 16 18 C -0.14 -1.22 8.13 37.16 0.30 -0.92 16 19 C -0.13 -1.47 7.91 37.16 0.29 -1.17 16 20 C -0.28 -3.56 10.40 29.12 0.30 -3.25 16 21 S 0.13 1.88 23.18 -107.50 -2.49 -0.61 16 22 H 0.05 0.96 6.71 -51.93 -0.35 0.61 16 23 H 0.07 1.62 6.76 -51.93 -0.35 1.27 16 24 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 25 H 0.03 0.86 7.93 -51.93 -0.41 0.45 16 26 H -0.01 -0.14 8.12 -51.93 -0.42 -0.56 16 27 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 28 H 0.09 1.56 7.93 -51.93 -0.41 1.15 16 29 H 0.06 1.04 8.12 -51.93 -0.42 0.62 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.45 7.15 -51.93 -0.37 0.08 16 36 H 0.06 0.86 7.98 -51.93 -0.41 0.45 16 37 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.17 1.68 7.31 -52.49 -0.38 1.30 16 LS Contribution 330.01 15.07 4.97 4.97 Total: -1.00 -29.84 330.01 -8.82 -38.66 By element: Atomic # 1 Polarization: 2.13 SS G_CDS: -6.43 Total: -4.30 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: 0.65 Total: -8.87 kcal Atomic # 7 Polarization: -45.95 SS G_CDS: -0.50 Total: -46.45 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 1.88 SS G_CDS: -2.49 Total: -0.61 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.84 -8.82 -38.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094966439.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.422 kcal (2) G-P(sol) polarization free energy of solvation -29.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds