Wall clock time and date at job start Mon Mar 30 2020 06:47:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36041 * 117.00064 * 2 1 4 4 C 1.38669 * 119.96831 * 0.02562 * 3 2 1 5 5 C 1.38626 * 119.97184 * 179.97438 * 4 3 2 6 6 N 1.40146 * 120.04894 * 180.02562 * 5 4 3 7 7 C 1.46902 * 110.99829 * 296.04629 * 6 5 4 8 8 C 1.46897 * 111.00077 * 59.99742 * 6 5 4 9 9 H 1.08999 * 109.47196 * 300.00078 * 8 6 5 10 10 C 1.52996 * 109.47046 * 60.00687 * 8 6 5 11 11 C 1.50704 * 109.47296 * 180.02562 * 8 6 5 12 12 H 1.08003 * 119.99484 * 0.02562 * 11 8 6 13 13 C 1.37871 * 120.00254 * 179.97438 * 11 8 6 14 14 N 1.31513 * 119.99902 * 0.02562 * 13 11 8 15 15 Si 1.86805 * 120.00153 * 179.97438 * 13 11 8 16 16 H 1.48495 * 109.46972 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.46644 * 120.00299 * 15 13 11 18 18 H 1.48494 * 109.47211 * 240.00658 * 15 13 11 19 19 C 1.39432 * 119.90605 * 0.02562 * 5 4 3 20 20 N 1.40268 * 120.03446 * 179.97438 * 19 5 4 21 21 C 1.38623 * 119.92798 * 0.02562 * 19 5 4 22 22 C 1.38437 * 120.03173 * 359.72218 * 21 19 5 23 23 F 1.35093 * 119.95437 * 180.29677 * 22 21 19 24 24 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46938 * 59.99824 * 1 2 3 26 26 H 1.09004 * 109.46926 * 299.99945 * 1 2 3 27 27 H 1.07998 * 120.01665 * 0.02562 * 4 3 2 28 28 H 1.08997 * 109.47435 * 59.99954 * 7 6 5 29 29 H 1.09002 * 109.47283 * 179.97438 * 7 6 5 30 30 H 1.09007 * 109.47326 * 300.00108 * 7 6 5 31 31 H 1.09001 * 109.47312 * 180.02562 * 10 8 6 32 32 H 1.09011 * 109.47073 * 299.99856 * 10 8 6 33 33 H 1.09002 * 109.47603 * 59.99118 * 10 8 6 34 34 H 0.97004 * 120.00088 * 180.02562 * 14 13 11 35 35 H 0.96999 * 120.00180 * 359.97438 * 20 19 5 36 36 H 0.96998 * 119.99420 * 180.02562 * 20 19 5 37 37 H 1.08001 * 119.98271 * 180.02562 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2121 0.0000 4 6 1.2908 2.3747 0.0005 5 6 1.9201 3.6099 0.0011 6 7 1.1577 4.7859 0.0022 7 6 0.3655 4.9008 -1.2296 8 6 0.2964 4.8538 1.1902 9 1 -0.3798 3.9990 1.1981 10 6 1.1634 4.8302 2.4506 11 6 -0.5067 6.1286 1.1563 12 1 -0.3892 6.8190 0.3340 13 6 -1.3920 6.4130 2.1742 14 7 -1.5353 5.5720 3.1751 15 14 -2.3869 7.9935 2.1324 16 1 -2.0434 8.7624 0.9094 17 1 -3.8353 7.6663 2.1205 18 1 -2.0732 8.8077 3.3339 19 6 3.3126 3.6807 0.0005 20 7 3.9521 4.9291 0.0005 21 6 4.0643 2.5159 -0.0011 22 6 3.4330 1.2839 0.0037 23 9 4.1671 0.1498 0.0081 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 0.2123 2.3179 0.0014 28 1 -0.3081 4.0477 -1.3093 29 1 -0.2168 5.8218 -1.2025 30 1 1.0334 4.9180 -2.0909 31 1 0.5243 4.8802 3.3322 32 1 1.7440 3.9079 2.4750 33 1 1.8397 5.6850 2.4426 34 1 -2.1584 5.7719 3.8911 35 1 3.4256 5.7437 0.0005 36 1 4.9209 4.9776 -0.0002 37 1 5.1429 2.5697 -0.0011 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104142011.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:39 Heat of formation + Delta-G solvation = -42.874518 kcal Electronic energy + Delta-G solvation = -21217.430842 eV Core-core repulsion = 17909.981768 eV Total energy + Delta-G solvation = -3307.449074 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.133 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.42982 -39.93442 -38.10588 -35.99478 -33.29488 -32.84190 -29.61699 -28.97345 -28.29152 -26.69277 -25.15506 -24.12331 -22.43093 -21.37625 -19.77142 -17.80464 -17.31769 -16.84528 -16.21748 -15.79699 -15.24467 -15.16136 -14.72584 -14.67457 -14.45359 -14.03318 -13.82447 -13.23928 -12.90207 -12.43657 -12.24168 -12.23210 -11.69316 -11.58319 -11.29740 -11.16807 -11.11547 -10.81476 -10.69634 -10.23077 -10.14406 -10.09510 -9.37644 -9.02093 -8.52954 -8.32127 -7.50647 -6.79450 -6.09544 -4.15260 1.49106 1.87032 3.23739 3.32322 3.35381 3.52052 4.00107 4.22445 4.32673 4.67471 4.84362 5.10747 5.22722 5.29089 5.39526 5.57193 5.68459 5.78671 5.90580 6.08969 6.18724 6.20703 6.35641 6.63127 6.68302 6.80518 6.89508 7.03767 7.10622 7.40424 7.59364 7.65001 7.72912 7.92117 8.03559 8.23214 8.28615 8.56661 8.90413 9.50238 10.96962 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.024206 B = 0.005917 C = 0.005309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.457117 B = 4730.997720 C = 5272.414468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.319 6.319 3 C 0.041 3.959 4 C -0.162 4.162 5 C 0.074 3.926 6 N -0.502 5.502 7 C 0.042 3.958 8 C 0.219 3.781 9 H 0.002 0.998 10 C -0.129 4.129 11 C -0.508 4.508 12 H 0.065 0.935 13 C 0.061 3.939 14 N -0.890 5.890 15 Si 0.897 3.103 16 H -0.273 1.273 17 H -0.285 1.285 18 H -0.284 1.284 19 C 0.230 3.770 20 N -0.863 5.863 21 C -0.206 4.206 22 C 0.098 3.902 23 F -0.140 7.140 24 H 0.095 0.905 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.135 0.865 28 H 0.015 0.985 29 H 0.083 0.917 30 H 0.045 0.955 31 H 0.085 0.915 32 H 0.008 0.992 33 H 0.032 0.968 34 H 0.261 0.739 35 H 0.412 0.588 36 H 0.390 0.610 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.738 -5.405 -6.555 10.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.233 6.233 3 C -0.007 4.007 4 C -0.183 4.183 5 C -0.025 4.025 6 N -0.224 5.224 7 C -0.105 4.105 8 C 0.114 3.886 9 H 0.020 0.980 10 C -0.187 4.187 11 C -0.547 4.547 12 H 0.083 0.917 13 C -0.141 4.141 14 N -0.529 5.529 15 Si 0.725 3.275 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.210 1.210 19 C 0.123 3.877 20 N -0.403 5.403 21 C -0.231 4.231 22 C 0.077 3.923 23 F -0.119 7.119 24 H 0.114 0.886 25 H 0.070 0.930 26 H 0.075 0.925 27 H 0.152 0.848 28 H 0.034 0.966 29 H 0.102 0.898 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.027 0.973 33 H 0.052 0.948 34 H 0.071 0.929 35 H 0.243 0.757 36 H 0.217 0.783 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.003 -5.247 -6.360 10.818 hybrid contribution -1.130 0.387 0.171 1.207 sum 5.873 -4.860 -6.189 9.819 Atomic orbital electron populations 1.22993 0.78665 1.03332 1.01560 1.86040 1.21034 1.26157 1.90089 1.18555 0.90407 0.85162 1.06559 1.21523 1.00495 0.91677 1.04610 1.18386 0.91299 0.89668 1.03155 1.59921 1.27394 1.30451 1.04674 1.22267 0.95966 1.01733 0.90583 1.19349 0.88596 0.96575 0.84046 0.98027 1.21755 0.98653 0.96790 1.01511 1.21168 1.21247 1.04863 1.07393 0.91653 1.24926 0.96959 0.96903 0.95322 1.69906 1.36440 1.35942 1.10623 0.86460 0.79711 0.83300 0.78047 1.19724 1.21138 1.21009 1.17244 0.90085 0.85853 0.94494 1.42399 1.08224 1.05252 1.84415 1.20083 0.99783 0.89290 1.13908 1.16474 0.85607 0.82047 1.08125 1.91431 1.76910 1.49183 1.94399 0.88623 0.92990 0.92489 0.84758 0.96612 0.89838 0.93609 0.89668 0.97345 0.94848 0.92934 0.75670 0.78312 0.84716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.81 101.05 0.99 1.39 16 2 O -0.32 -5.41 10.36 -19.87 -0.21 -5.61 16 3 C 0.04 0.72 6.69 -39.21 -0.26 0.46 16 4 C -0.16 -2.97 7.56 -39.28 -0.30 -3.26 16 5 C 0.07 1.38 3.34 -83.47 -0.28 1.10 16 6 N -0.50 -10.11 3.77 -172.45 -0.65 -10.76 16 7 C 0.04 0.77 9.11 60.07 0.55 1.32 16 8 C 0.22 5.23 1.84 -68.87 -0.13 5.11 16 9 H 0.00 0.06 7.13 -51.93 -0.37 -0.31 16 10 C -0.13 -3.10 8.85 37.16 0.33 -2.77 16 11 C -0.51 -13.11 7.88 -34.44 -0.27 -13.38 16 12 H 0.07 1.66 6.40 -52.48 -0.34 1.33 16 13 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 14 N -0.89 -24.55 11.32 55.43 0.63 -23.92 16 15 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 16 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 17 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 19 C 0.23 3.82 6.78 -83.41 -0.57 3.25 16 20 N -0.86 -12.06 9.10 32.57 0.30 -11.76 16 21 C -0.21 -3.20 9.86 -39.37 -0.39 -3.59 16 22 C 0.10 1.68 7.30 -39.29 -0.29 1.40 16 23 F -0.14 -2.41 17.10 2.25 0.04 -2.37 16 24 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 25 H 0.05 0.65 7.66 -51.93 -0.40 0.25 16 26 H 0.06 0.79 7.66 -51.93 -0.40 0.39 16 27 H 0.13 2.47 5.25 -52.49 -0.28 2.20 16 28 H 0.02 0.28 7.35 -51.93 -0.38 -0.10 16 29 H 0.08 1.62 6.10 -51.93 -0.32 1.30 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.08 2.26 6.07 -51.93 -0.32 1.94 16 32 H 0.01 0.18 7.22 -51.92 -0.37 -0.20 16 33 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.26 6.87 8.31 -40.82 -0.34 6.54 16 35 H 0.41 6.19 8.11 -40.82 -0.33 5.86 16 36 H 0.39 4.20 8.85 -40.82 -0.36 3.83 16 37 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 305.43 15.07 4.60 4.60 Total: -1.00 -28.52 305.43 -5.70 -34.22 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -4.68 Total: 7.62 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: -0.70 Total: -7.48 kcal Atomic # 7 Polarization: -46.72 SS G_CDS: 0.27 Total: -46.45 kcal Atomic # 8 Polarization: -5.41 SS G_CDS: -0.21 Total: -5.61 kcal Atomic # 9 Polarization: -2.41 SS G_CDS: 0.04 Total: -2.37 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -28.52 -5.70 -34.22 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104142011.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.652 kcal (2) G-P(sol) polarization free energy of solvation -28.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds