Wall clock time and date at job start Mon Mar 30 2020 06:47:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36041 * 117.00064 * 2 1 4 4 C 1.38669 * 119.96831 * 0.02562 * 3 2 1 5 5 C 1.38626 * 119.97184 * 179.97438 * 4 3 2 6 6 N 1.40146 * 120.04894 * 180.02562 * 5 4 3 7 7 C 1.46902 * 110.99829 * 296.04629 * 6 5 4 8 8 C 1.46897 * 111.00077 * 59.99742 * 6 5 4 9 9 H 1.08999 * 109.47196 * 300.00078 * 8 6 5 10 10 C 1.52996 * 109.47046 * 60.00687 * 8 6 5 11 11 C 1.50704 * 109.47296 * 180.02562 * 8 6 5 12 12 H 1.08003 * 119.99484 * 0.02562 * 11 8 6 13 13 C 1.37871 * 120.00254 * 179.97438 * 11 8 6 14 14 N 1.31513 * 119.99902 * 0.02562 * 13 11 8 15 15 Si 1.86805 * 120.00153 * 179.97438 * 13 11 8 16 16 H 1.48495 * 109.46972 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.46644 * 120.00299 * 15 13 11 18 18 H 1.48494 * 109.47211 * 240.00658 * 15 13 11 19 19 C 1.39432 * 119.90605 * 0.02562 * 5 4 3 20 20 N 1.40268 * 120.03446 * 179.97438 * 19 5 4 21 21 C 1.38623 * 119.92798 * 0.02562 * 19 5 4 22 22 C 1.38437 * 120.03173 * 359.72218 * 21 19 5 23 23 F 1.35093 * 119.95437 * 180.29677 * 22 21 19 24 24 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46938 * 59.99824 * 1 2 3 26 26 H 1.09004 * 109.46926 * 299.99945 * 1 2 3 27 27 H 1.07998 * 120.01665 * 0.02562 * 4 3 2 28 28 H 1.08997 * 109.47435 * 59.99954 * 7 6 5 29 29 H 1.09002 * 109.47283 * 179.97438 * 7 6 5 30 30 H 1.09007 * 109.47326 * 300.00108 * 7 6 5 31 31 H 1.09001 * 109.47312 * 180.02562 * 10 8 6 32 32 H 1.09011 * 109.47073 * 299.99856 * 10 8 6 33 33 H 1.09002 * 109.47603 * 59.99118 * 10 8 6 34 34 H 0.97004 * 120.00088 * 180.02562 * 14 13 11 35 35 H 0.96999 * 120.00180 * 359.97438 * 20 19 5 36 36 H 0.96998 * 119.99420 * 180.02562 * 20 19 5 37 37 H 1.08001 * 119.98271 * 180.02562 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2121 0.0000 4 6 1.2908 2.3747 0.0005 5 6 1.9201 3.6099 0.0011 6 7 1.1577 4.7859 0.0022 7 6 0.3655 4.9008 -1.2296 8 6 0.2964 4.8538 1.1902 9 1 -0.3798 3.9990 1.1981 10 6 1.1634 4.8302 2.4506 11 6 -0.5067 6.1286 1.1563 12 1 -0.3892 6.8190 0.3340 13 6 -1.3920 6.4130 2.1742 14 7 -1.5353 5.5720 3.1751 15 14 -2.3869 7.9935 2.1324 16 1 -2.0434 8.7624 0.9094 17 1 -3.8353 7.6663 2.1205 18 1 -2.0732 8.8077 3.3339 19 6 3.3126 3.6807 0.0005 20 7 3.9521 4.9291 0.0005 21 6 4.0643 2.5159 -0.0011 22 6 3.4330 1.2839 0.0037 23 9 4.1671 0.1498 0.0081 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 0.2123 2.3179 0.0014 28 1 -0.3081 4.0477 -1.3093 29 1 -0.2168 5.8218 -1.2025 30 1 1.0334 4.9180 -2.0909 31 1 0.5243 4.8802 3.3322 32 1 1.7440 3.9079 2.4750 33 1 1.8397 5.6850 2.4426 34 1 -2.1584 5.7719 3.8911 35 1 3.4256 5.7437 0.0005 36 1 4.9209 4.9776 -0.0002 37 1 5.1429 2.5697 -0.0011 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104142011.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:38 Heat of formation + Delta-G solvation = -61.377900 kcal Electronic energy + Delta-G solvation = -21218.233209 eV Core-core repulsion = 17909.981768 eV Total energy + Delta-G solvation = -3308.251441 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.133 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.77341 -41.30348 -39.46688 -37.51987 -34.78417 -34.49468 -31.36977 -30.50471 -29.51076 -28.05127 -26.98138 -25.69497 -23.89915 -22.79113 -21.42471 -19.17969 -18.70272 -18.15234 -18.04482 -17.16581 -16.91059 -16.45771 -16.20812 -15.99260 -15.73410 -15.63931 -15.26384 -14.79518 -14.43688 -13.97750 -13.85388 -13.59951 -13.24275 -12.96916 -12.83816 -12.69359 -12.62278 -12.48057 -12.32326 -12.06445 -12.01819 -11.86504 -10.95196 -10.65401 -10.52771 -9.68184 -9.17774 -8.12917 -8.04825 -6.22495 0.12752 0.53314 1.43089 1.46101 1.56577 2.32384 2.42695 2.65356 2.99649 3.15091 3.23664 3.49318 3.81288 4.09525 4.31256 4.39358 4.44609 4.56571 4.64493 4.68944 4.77702 4.79671 4.86178 4.99219 5.05363 5.09032 5.21415 5.33898 5.49448 5.63480 5.73342 5.83399 6.21419 6.29011 6.33517 6.57837 6.91007 6.92346 7.21310 7.46964 8.95572 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.024206 B = 0.005917 C = 0.005309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1156.457117 B = 4730.997720 C = 5272.414468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.332 6.332 3 C 0.029 3.971 4 C -0.167 4.167 5 C 0.046 3.954 6 N -0.494 5.494 7 C 0.044 3.956 8 C 0.227 3.773 9 H -0.032 1.032 10 C -0.112 4.112 11 C -0.517 4.517 12 H 0.067 0.933 13 C 0.013 3.987 14 N -0.921 5.921 15 Si 0.959 3.041 16 H -0.263 1.263 17 H -0.285 1.285 18 H -0.284 1.284 19 C 0.232 3.768 20 N -0.851 5.851 21 C -0.193 4.193 22 C 0.092 3.908 23 F -0.140 7.140 24 H 0.127 0.873 25 H 0.057 0.943 26 H 0.044 0.956 27 H 0.124 0.876 28 H 0.011 0.989 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.013 0.987 33 H 0.034 0.966 34 H 0.260 0.740 35 H 0.409 0.591 36 H 0.408 0.592 37 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.900 -4.920 -7.442 11.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.247 6.247 3 C -0.019 4.019 4 C -0.188 4.188 5 C -0.053 4.053 6 N -0.216 5.216 7 C -0.103 4.103 8 C 0.122 3.878 9 H -0.014 1.014 10 C -0.170 4.170 11 C -0.555 4.555 12 H 0.086 0.914 13 C -0.186 4.186 14 N -0.561 5.561 15 Si 0.785 3.215 16 H -0.188 1.188 17 H -0.211 1.211 18 H -0.210 1.210 19 C 0.124 3.876 20 N -0.391 5.391 21 C -0.217 4.217 22 C 0.071 3.929 23 F -0.119 7.119 24 H 0.145 0.855 25 H 0.076 0.924 26 H 0.063 0.937 27 H 0.142 0.858 28 H 0.030 0.970 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.032 0.968 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.240 0.760 36 H 0.238 0.762 37 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 8.200 -4.754 -7.268 11.944 hybrid contribution -1.452 0.161 0.415 1.519 sum 6.748 -4.593 -6.853 10.658 Atomic orbital electron populations 1.23207 0.77054 1.05346 1.01253 1.86019 1.22731 1.25870 1.90059 1.18680 0.90944 0.85257 1.07006 1.21429 1.00095 0.92090 1.05217 1.18497 0.92174 0.89074 1.05557 1.59812 1.26515 1.31510 1.03779 1.22270 0.96310 1.00909 0.90842 1.19069 0.88464 0.94553 0.85744 1.01447 1.21525 0.98012 0.96974 1.00522 1.21459 1.21383 1.05392 1.07257 0.91446 1.25688 0.98070 0.99768 0.95082 1.70041 1.37147 1.37611 1.11257 0.85481 0.78065 0.79756 0.78157 1.18751 1.21107 1.20985 1.17279 0.89335 0.87116 0.93912 1.42360 1.09242 1.04123 1.83381 1.20346 1.01301 0.88054 1.12012 1.16713 0.85518 0.82654 1.07973 1.91430 1.76770 1.49322 1.94389 0.85454 0.92411 0.93690 0.85810 0.97042 0.90916 0.91100 0.92384 0.96845 0.94679 0.93044 0.76045 0.76220 0.81411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 9.81 113.37 1.11 1.79 16 2 O -0.33 -11.12 10.36 -94.02 -0.97 -12.09 16 3 C 0.03 1.01 6.69 22.51 0.15 1.16 16 4 C -0.17 -6.15 7.56 22.47 0.17 -5.98 16 5 C 0.05 1.68 3.34 38.19 0.13 1.81 16 6 N -0.49 -19.70 3.77 -699.50 -2.64 -22.34 16 7 C 0.04 1.59 9.11 127.69 1.16 2.75 16 8 C 0.23 11.02 1.84 44.17 0.08 11.10 16 9 H -0.03 -1.75 7.13 -2.39 -0.02 -1.77 16 10 C -0.11 -5.45 8.85 71.98 0.64 -4.81 16 11 C -0.52 -26.73 7.88 25.60 0.20 -26.52 16 12 H 0.07 3.40 6.40 -2.91 -0.02 3.38 16 13 C 0.01 0.67 5.30 84.65 0.45 1.12 16 14 N -0.92 -51.67 11.32 21.44 0.24 -51.42 16 15 Si 0.96 41.98 29.54 68.60 2.03 44.01 16 16 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 17 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 18 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 19 C 0.23 7.21 6.78 38.17 0.26 7.47 16 20 N -0.85 -21.51 9.10 -50.85 -0.46 -21.98 16 21 C -0.19 -5.47 9.86 22.41 0.22 -5.25 16 22 C 0.09 3.01 7.30 22.46 0.16 3.17 16 23 F -0.14 -4.57 17.10 44.97 0.77 -3.80 16 24 H 0.13 2.46 8.14 -2.39 -0.02 2.44 16 25 H 0.06 1.43 7.66 -2.39 -0.02 1.41 16 26 H 0.04 1.28 7.66 -2.38 -0.02 1.26 16 27 H 0.12 4.73 5.25 -2.91 -0.02 4.71 16 28 H 0.01 0.41 7.35 -2.39 -0.02 0.39 16 29 H 0.07 2.78 6.10 -2.39 -0.01 2.77 16 30 H 0.07 2.21 8.14 -2.38 -0.02 2.19 16 31 H 0.06 3.14 6.07 -2.39 -0.01 3.12 16 32 H 0.01 0.59 7.22 -2.38 -0.02 0.57 16 33 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 34 H 0.26 13.95 8.31 -92.71 -0.77 13.18 16 35 H 0.41 11.36 8.11 -92.71 -0.75 10.61 16 36 H 0.41 7.39 8.85 -92.71 -0.82 6.57 16 37 H 0.17 3.59 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -60.66 305.43 3.24 -57.42 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: -0.45 Total: 22.39 kcal Atomic # 6 Polarization: -16.92 SS G_CDS: 4.74 Total: -12.18 kcal Atomic # 7 Polarization: -92.88 SS G_CDS: -2.86 Total: -95.74 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: -0.97 Total: -12.09 kcal Atomic # 9 Polarization: -4.57 SS G_CDS: 0.77 Total: -3.80 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -60.66 3.24 -57.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104142011.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.957 kcal (2) G-P(sol) polarization free energy of solvation -60.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds