Wall clock time and date at job start Mon Mar 30 2020 06:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36051 * 117.00177 * 2 1 4 4 C 1.38668 * 119.96447 * 359.97438 * 3 2 1 5 5 C 1.38626 * 119.97111 * 180.02562 * 4 3 2 6 6 N 1.40145 * 120.04935 * 179.97438 * 5 4 3 7 7 C 1.46907 * 111.00030 * 297.06049 * 6 5 4 8 8 C 1.46894 * 111.00352 * 61.01756 * 6 5 4 9 9 H 1.09001 * 109.46967 * 295.58295 * 8 6 5 10 10 C 1.52994 * 109.47440 * 175.57980 * 8 6 5 11 11 C 1.50701 * 109.46995 * 55.57479 * 8 6 5 12 12 H 1.08005 * 120.00022 * 0.02562 * 11 8 6 13 13 C 1.37877 * 120.00350 * 179.97438 * 11 8 6 14 14 N 1.31516 * 119.99596 * 0.02562 * 13 11 8 15 15 Si 1.86799 * 120.00451 * 180.02562 * 13 11 8 16 16 H 1.48502 * 109.46967 * 90.00117 * 15 13 11 17 17 H 1.48501 * 109.47299 * 210.00321 * 15 13 11 18 18 H 1.48497 * 109.46929 * 330.00405 * 15 13 11 19 19 C 1.39427 * 119.90284 * 0.02562 * 5 4 3 20 20 N 1.40265 * 120.03508 * 180.02562 * 19 5 4 21 21 C 1.38628 * 119.93147 * 359.97438 * 19 5 4 22 22 C 1.38429 * 120.02903 * 0.02562 * 21 19 5 23 23 F 1.35095 * 119.95346 * 180.02562 * 22 21 19 24 24 H 1.08998 * 109.47408 * 300.00418 * 1 2 3 25 25 H 1.09002 * 109.47333 * 60.00179 * 1 2 3 26 26 H 1.08995 * 109.47423 * 180.02562 * 1 2 3 27 27 H 1.07999 * 120.01721 * 0.05456 * 4 3 2 28 28 H 1.09008 * 109.46622 * 60.00384 * 7 6 5 29 29 H 1.08995 * 109.46977 * 179.97438 * 7 6 5 30 30 H 1.08996 * 109.47304 * 300.00495 * 7 6 5 31 31 H 1.09003 * 109.47488 * 185.98118 * 10 8 6 32 32 H 1.09005 * 109.47318 * 305.97722 * 10 8 6 33 33 H 1.08996 * 109.47606 * 65.98293 * 10 8 6 34 34 H 0.97001 * 119.99960 * 180.02562 * 14 13 11 35 35 H 0.97000 * 120.00231 * 179.97438 * 20 19 5 36 36 H 0.97007 * 120.00341 * 359.97438 * 20 19 5 37 37 H 1.08002 * 119.98562 * 179.71956 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2122 0.0000 4 6 1.2908 2.3747 -0.0005 5 6 1.9200 3.6099 -0.0011 6 7 1.1576 4.7859 -0.0022 7 6 0.3482 4.8874 -1.2239 8 6 0.3132 4.8670 1.1970 9 1 -0.4152 4.0562 1.1840 10 6 -0.4191 6.2102 1.2154 11 6 1.1752 4.7479 2.4274 12 1 2.2436 4.6247 2.3284 13 6 0.6001 4.7972 3.6796 14 7 -0.7008 4.9477 3.8001 15 14 1.6687 4.6502 5.2047 16 1 2.1145 6.0018 5.6288 17 1 0.8860 4.0212 6.2988 18 1 2.8550 3.8110 4.8989 19 6 3.3125 3.6807 -0.0016 20 7 3.9520 4.9290 -0.0016 21 6 4.0642 2.5159 -0.0011 22 6 3.4329 1.2840 -0.0005 23 9 4.1670 0.1499 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 0.2123 2.3179 -0.0001 28 1 -0.3265 4.0334 -1.2847 29 1 -0.2337 5.8087 -1.1986 30 1 1.0039 4.8952 -2.0946 31 1 -0.9619 6.3154 2.1547 32 1 0.3047 7.0199 1.1214 33 1 -1.1217 6.2525 0.3831 34 1 -1.1054 4.9828 4.6810 35 1 4.9208 4.9777 -0.0016 36 1 3.4256 5.7438 -0.0016 37 1 5.1429 2.5697 -0.0061 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104142014.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:42 Heat of formation + Delta-G solvation = -41.908770 kcal Electronic energy + Delta-G solvation = -21457.127546 eV Core-core repulsion = 18149.720350 eV Total energy + Delta-G solvation = -3307.407196 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.133 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.28588 -39.79329 -38.00946 -35.96706 -33.16142 -32.81842 -29.84853 -28.51911 -28.12119 -26.70379 -25.30582 -24.21004 -22.29160 -21.15653 -19.61201 -17.72964 -17.18718 -16.89465 -16.14998 -15.66739 -15.29370 -15.04942 -14.60069 -14.54503 -14.32611 -13.92419 -13.78817 -13.30800 -12.76116 -12.55729 -12.20453 -11.97506 -11.84793 -11.49412 -11.18593 -11.12368 -11.00989 -10.70783 -10.67588 -10.37868 -10.32625 -9.96059 -9.22712 -9.00536 -8.48222 -8.15081 -7.54706 -6.63378 -6.05326 -4.09013 1.67416 2.04437 3.28984 3.35872 3.41369 3.64591 4.16125 4.37164 4.40078 4.72816 4.95735 5.23152 5.27948 5.38349 5.48493 5.68746 5.78215 5.83568 5.94706 6.00967 6.18783 6.25195 6.33805 6.49954 6.70085 6.81322 6.92758 6.97871 7.09417 7.35112 7.62082 7.74926 7.78403 7.94214 8.20522 8.27669 8.42301 8.50034 8.97477 9.56169 11.01128 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.015322 B = 0.007863 C = 0.007446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.944160 B = 3560.330724 C = 3759.478379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.320 6.320 3 C 0.040 3.960 4 C -0.154 4.154 5 C 0.097 3.903 6 N -0.503 5.503 7 C 0.029 3.971 8 C 0.217 3.783 9 H 0.002 0.998 10 C -0.135 4.135 11 C -0.497 4.497 12 H 0.064 0.936 13 C 0.061 3.939 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.281 1.281 17 H -0.287 1.287 18 H -0.274 1.274 19 C 0.233 3.767 20 N -0.863 5.863 21 C -0.207 4.207 22 C 0.096 3.904 23 F -0.142 7.142 24 H 0.057 0.943 25 H 0.049 0.951 26 H 0.094 0.906 27 H 0.131 0.869 28 H 0.017 0.983 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.090 0.910 32 H 0.034 0.966 33 H 0.009 0.991 34 H 0.260 0.740 35 H 0.389 0.611 36 H 0.411 0.589 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.745 -2.952 -8.913 10.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.234 6.234 3 C -0.007 4.007 4 C -0.176 4.176 5 C -0.002 4.002 6 N -0.226 5.226 7 C -0.119 4.119 8 C 0.113 3.887 9 H 0.020 0.980 10 C -0.193 4.193 11 C -0.536 4.536 12 H 0.082 0.918 13 C -0.140 4.140 14 N -0.534 5.534 15 Si 0.721 3.279 16 H -0.207 1.207 17 H -0.213 1.213 18 H -0.198 1.198 19 C 0.126 3.874 20 N -0.402 5.402 21 C -0.232 4.232 22 C 0.075 3.925 23 F -0.121 7.121 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.112 0.888 27 H 0.148 0.852 28 H 0.036 0.964 29 H 0.089 0.911 30 H 0.072 0.928 31 H 0.108 0.892 32 H 0.053 0.947 33 H 0.028 0.972 34 H 0.070 0.930 35 H 0.215 0.785 36 H 0.241 0.759 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 3.973 -2.768 -8.753 10.004 hybrid contribution -0.091 -0.472 1.057 1.161 sum 3.882 -3.240 -7.696 9.209 Atomic orbital electron populations 1.22960 0.78918 1.03145 1.01436 1.86031 1.20860 1.26302 1.90197 1.18500 0.90374 0.85062 1.06758 1.21341 1.00088 0.91657 1.04472 1.17992 0.90880 0.89048 1.02241 1.59911 1.26773 1.32085 1.03801 1.22385 0.96385 1.00674 0.92415 1.19376 0.90326 0.93860 0.85161 0.98035 1.21869 0.98415 0.97866 1.01180 1.21104 0.94168 1.48791 0.89540 0.91755 1.24872 0.94944 0.95284 0.98948 1.69870 1.09437 1.50601 1.23450 0.86568 0.80552 0.78189 0.82624 1.20717 1.21328 1.19836 1.17180 0.90092 0.85761 0.94337 1.42344 1.08082 1.05227 1.84586 1.20038 0.99650 0.89361 1.14114 1.16440 0.85603 0.81983 1.08448 1.91418 1.76961 1.49266 1.94475 0.92439 0.93226 0.88797 0.85173 0.96431 0.91099 0.92806 0.89156 0.94697 0.97227 0.92994 0.78461 0.75858 0.84911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 9.81 101.05 0.99 1.43 16 2 O -0.32 -5.80 10.36 -19.90 -0.21 -6.01 16 3 C 0.04 0.78 6.69 -39.21 -0.26 0.51 16 4 C -0.15 -3.00 7.60 -39.28 -0.30 -3.30 16 5 C 0.10 1.91 3.50 -83.47 -0.29 1.62 16 6 N -0.50 -10.03 3.77 -172.45 -0.65 -10.68 16 7 C 0.03 0.49 9.10 60.07 0.55 1.04 16 8 C 0.22 5.14 1.78 -68.87 -0.12 5.02 16 9 H 0.00 0.05 7.34 -51.93 -0.38 -0.33 16 10 C -0.14 -3.09 8.64 37.15 0.32 -2.77 16 11 C -0.50 -13.09 8.04 -34.44 -0.28 -13.37 16 12 H 0.06 1.73 6.87 -52.48 -0.36 1.37 16 13 C 0.06 1.63 5.29 -17.82 -0.09 1.54 16 14 N -0.89 -24.78 11.29 55.43 0.63 -24.16 16 15 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 16 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 19 C 0.23 4.20 6.34 -83.41 -0.53 3.67 16 20 N -0.86 -13.12 9.10 32.57 0.30 -12.82 16 21 C -0.21 -3.56 9.86 -39.37 -0.39 -3.95 16 22 C 0.10 1.80 7.30 -39.30 -0.29 1.51 16 23 F -0.14 -2.65 17.10 2.25 0.04 -2.61 16 24 H 0.06 0.87 7.66 -51.93 -0.40 0.47 16 25 H 0.05 0.64 7.66 -51.93 -0.40 0.24 16 26 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.13 2.49 5.29 -52.49 -0.28 2.21 16 28 H 0.02 0.29 7.29 -51.92 -0.38 -0.09 16 29 H 0.07 1.16 6.24 -51.93 -0.32 0.83 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.09 2.31 5.93 -51.93 -0.31 2.00 16 32 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.01 0.18 6.66 -51.93 -0.35 -0.16 16 34 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 35 H 0.39 4.69 8.85 -40.82 -0.36 4.33 16 36 H 0.41 6.51 8.11 -40.82 -0.33 6.18 16 37 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 LS Contribution 305.13 15.07 4.60 4.60 Total: -1.00 -29.12 305.13 -5.70 -34.82 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -4.69 Total: 7.51 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -0.69 Total: -7.05 kcal Atomic # 7 Polarization: -47.93 SS G_CDS: 0.27 Total: -47.66 kcal Atomic # 8 Polarization: -5.80 SS G_CDS: -0.21 Total: -6.01 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.04 Total: -2.61 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -29.12 -5.70 -34.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104142014.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.088 kcal (2) G-P(sol) polarization free energy of solvation -29.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds