Wall clock time and date at job start Mon Mar 30 2020 06:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36051 * 117.00177 * 2 1 4 4 C 1.38668 * 119.96447 * 359.97438 * 3 2 1 5 5 C 1.38626 * 119.97111 * 180.02562 * 4 3 2 6 6 N 1.40145 * 120.04935 * 179.97438 * 5 4 3 7 7 C 1.46907 * 111.00030 * 297.06049 * 6 5 4 8 8 C 1.46894 * 111.00352 * 61.01756 * 6 5 4 9 9 H 1.09001 * 109.46967 * 295.58295 * 8 6 5 10 10 C 1.52994 * 109.47440 * 175.57980 * 8 6 5 11 11 C 1.50701 * 109.46995 * 55.57479 * 8 6 5 12 12 H 1.08005 * 120.00022 * 0.02562 * 11 8 6 13 13 C 1.37877 * 120.00350 * 179.97438 * 11 8 6 14 14 N 1.31516 * 119.99596 * 0.02562 * 13 11 8 15 15 Si 1.86799 * 120.00451 * 180.02562 * 13 11 8 16 16 H 1.48502 * 109.46967 * 90.00117 * 15 13 11 17 17 H 1.48501 * 109.47299 * 210.00321 * 15 13 11 18 18 H 1.48497 * 109.46929 * 330.00405 * 15 13 11 19 19 C 1.39427 * 119.90284 * 0.02562 * 5 4 3 20 20 N 1.40265 * 120.03508 * 180.02562 * 19 5 4 21 21 C 1.38628 * 119.93147 * 359.97438 * 19 5 4 22 22 C 1.38429 * 120.02903 * 0.02562 * 21 19 5 23 23 F 1.35095 * 119.95346 * 180.02562 * 22 21 19 24 24 H 1.08998 * 109.47408 * 300.00418 * 1 2 3 25 25 H 1.09002 * 109.47333 * 60.00179 * 1 2 3 26 26 H 1.08995 * 109.47423 * 180.02562 * 1 2 3 27 27 H 1.07999 * 120.01721 * 0.05456 * 4 3 2 28 28 H 1.09008 * 109.46622 * 60.00384 * 7 6 5 29 29 H 1.08995 * 109.46977 * 179.97438 * 7 6 5 30 30 H 1.08996 * 109.47304 * 300.00495 * 7 6 5 31 31 H 1.09003 * 109.47488 * 185.98118 * 10 8 6 32 32 H 1.09005 * 109.47318 * 305.97722 * 10 8 6 33 33 H 1.08996 * 109.47606 * 65.98293 * 10 8 6 34 34 H 0.97001 * 119.99960 * 180.02562 * 14 13 11 35 35 H 0.97000 * 120.00231 * 179.97438 * 20 19 5 36 36 H 0.97007 * 120.00341 * 359.97438 * 20 19 5 37 37 H 1.08002 * 119.98562 * 179.71956 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0467 1.2122 0.0000 4 6 1.2908 2.3747 -0.0005 5 6 1.9200 3.6099 -0.0011 6 7 1.1576 4.7859 -0.0022 7 6 0.3482 4.8874 -1.2239 8 6 0.3132 4.8670 1.1970 9 1 -0.4152 4.0562 1.1840 10 6 -0.4191 6.2102 1.2154 11 6 1.1752 4.7479 2.4274 12 1 2.2436 4.6247 2.3284 13 6 0.6001 4.7972 3.6796 14 7 -0.7008 4.9477 3.8001 15 14 1.6687 4.6502 5.2047 16 1 2.1145 6.0018 5.6288 17 1 0.8860 4.0212 6.2988 18 1 2.8550 3.8110 4.8989 19 6 3.3125 3.6807 -0.0016 20 7 3.9520 4.9290 -0.0016 21 6 4.0642 2.5159 -0.0011 22 6 3.4329 1.2840 -0.0005 23 9 4.1670 0.1499 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 0.2123 2.3179 -0.0001 28 1 -0.3265 4.0334 -1.2847 29 1 -0.2337 5.8087 -1.1986 30 1 1.0039 4.8952 -2.0946 31 1 -0.9619 6.3154 2.1547 32 1 0.3047 7.0199 1.1214 33 1 -1.1217 6.2525 0.3831 34 1 -1.1054 4.9828 4.6810 35 1 4.9208 4.9777 -0.0016 36 1 3.4256 5.7438 -0.0016 37 1 5.1429 2.5697 -0.0061 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104142014.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:42 Heat of formation + Delta-G solvation = -60.960277 kcal Electronic energy + Delta-G solvation = -21457.953681 eV Core-core repulsion = 18149.720350 eV Total energy + Delta-G solvation = -3308.233332 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.133 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.73553 -41.22664 -39.43018 -37.50577 -34.79899 -34.43881 -31.54227 -30.08457 -29.43899 -28.12484 -27.01455 -25.85809 -23.77536 -22.61710 -21.31023 -19.16693 -18.71533 -18.34574 -17.88197 -17.13556 -16.93754 -16.44606 -16.13796 -15.96130 -15.70231 -15.58018 -15.25767 -14.93077 -14.17646 -14.07814 -13.84369 -13.49357 -13.32400 -12.94837 -12.77674 -12.62301 -12.53848 -12.43081 -12.40551 -12.17707 -12.13005 -11.75693 -10.92239 -10.58501 -10.50364 -9.59980 -9.18250 -8.10556 -7.99141 -6.17786 0.22137 0.60975 1.38529 1.41298 1.49811 2.36592 2.41993 2.71801 3.06119 3.18673 3.24277 3.55331 3.86173 4.16066 4.33331 4.42577 4.47079 4.60311 4.62749 4.66185 4.80694 4.82931 4.86868 5.00024 5.07258 5.11463 5.14430 5.38828 5.51783 5.68997 5.75536 5.83640 6.30117 6.34143 6.44395 6.62645 6.83888 6.99711 7.26154 7.49960 8.95769 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.015322 B = 0.007863 C = 0.007446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1826.944160 B = 3560.330724 C = 3759.478379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.334 6.334 3 C 0.027 3.973 4 C -0.162 4.162 5 C 0.072 3.928 6 N -0.497 5.497 7 C 0.028 3.972 8 C 0.224 3.776 9 H -0.031 1.031 10 C -0.125 4.125 11 C -0.501 4.501 12 H 0.057 0.943 13 C 0.016 3.984 14 N -0.918 5.918 15 Si 0.944 3.056 16 H -0.273 1.273 17 H -0.288 1.288 18 H -0.277 1.277 19 C 0.230 3.770 20 N -0.851 5.851 21 C -0.199 4.199 22 C 0.084 3.916 23 F -0.143 7.143 24 H 0.042 0.958 25 H 0.060 0.940 26 H 0.126 0.874 27 H 0.125 0.875 28 H 0.016 0.984 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.038 0.962 33 H 0.031 0.969 34 H 0.259 0.741 35 H 0.405 0.595 36 H 0.409 0.591 37 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.931 -2.750 -9.554 11.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.249 6.249 3 C -0.021 4.021 4 C -0.183 4.183 5 C -0.027 4.027 6 N -0.219 5.219 7 C -0.119 4.119 8 C 0.119 3.881 9 H -0.013 1.013 10 C -0.183 4.183 11 C -0.539 4.539 12 H 0.075 0.925 13 C -0.182 4.182 14 N -0.558 5.558 15 Si 0.771 3.229 16 H -0.199 1.199 17 H -0.214 1.214 18 H -0.202 1.202 19 C 0.122 3.878 20 N -0.391 5.391 21 C -0.224 4.224 22 C 0.064 3.936 23 F -0.122 7.122 24 H 0.060 0.940 25 H 0.079 0.921 26 H 0.145 0.855 27 H 0.143 0.857 28 H 0.034 0.966 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.050 0.950 34 H 0.068 0.932 35 H 0.235 0.765 36 H 0.240 0.760 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 5.187 -2.552 -9.410 11.043 hybrid contribution -0.459 -0.576 1.194 1.403 sum 4.728 -3.128 -8.215 9.981 Atomic orbital electron populations 1.23192 0.77117 1.05258 1.01223 1.86006 1.22755 1.25971 1.90159 1.18662 0.90880 0.85345 1.07168 1.21332 0.99945 0.92011 1.05030 1.18200 0.91761 0.88895 1.03799 1.59829 1.26270 1.32394 1.03414 1.22466 0.96661 1.00905 0.91834 1.19116 0.89761 0.93001 0.86210 1.01343 1.21690 0.98581 0.97474 1.00577 1.21318 0.94042 1.47908 0.90657 0.92478 1.25507 0.95881 0.95539 1.01322 1.69983 1.10492 1.51601 1.23734 0.85765 0.78967 0.78231 0.79946 1.19913 1.21384 1.20201 1.17276 0.89663 0.86975 0.93930 1.42299 1.09056 1.04139 1.83615 1.20310 1.01112 0.88359 1.12603 1.16702 0.85665 0.82556 1.08679 1.91411 1.76861 1.49409 1.94511 0.93975 0.92089 0.85543 0.85719 0.96557 0.90420 0.90653 0.91980 0.94245 0.94996 0.93155 0.76500 0.76036 0.81897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 9.81 113.37 1.11 1.85 16 2 O -0.33 -12.01 10.36 -94.13 -0.97 -12.98 16 3 C 0.03 1.03 6.69 22.51 0.15 1.18 16 4 C -0.16 -6.30 7.60 22.47 0.17 -6.13 16 5 C 0.07 2.79 3.50 38.19 0.13 2.92 16 6 N -0.50 -19.34 3.77 -699.51 -2.64 -21.98 16 7 C 0.03 0.91 9.10 127.69 1.16 2.08 16 8 C 0.22 10.63 1.78 44.17 0.08 10.71 16 9 H -0.03 -1.65 7.34 -2.39 -0.02 -1.67 16 10 C -0.13 -5.66 8.64 71.98 0.62 -5.04 16 11 C -0.50 -26.29 8.04 25.60 0.21 -26.08 16 12 H 0.06 3.03 6.87 -2.91 -0.02 3.01 16 13 C 0.02 0.86 5.29 84.65 0.45 1.31 16 14 N -0.92 -51.39 11.29 21.45 0.24 -51.15 16 15 Si 0.94 43.82 29.54 68.60 2.03 45.85 16 16 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 17 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 18 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 19 C 0.23 7.86 6.34 38.17 0.24 8.11 16 20 N -0.85 -23.84 9.10 -50.86 -0.46 -24.30 16 21 C -0.20 -6.43 9.86 22.41 0.22 -6.21 16 22 C 0.08 3.07 7.30 22.45 0.16 3.23 16 23 F -0.14 -5.14 17.10 44.97 0.77 -4.37 16 24 H 0.04 1.29 7.66 -2.39 -0.02 1.27 16 25 H 0.06 1.54 7.66 -2.39 -0.02 1.52 16 26 H 0.13 2.61 8.14 -2.39 -0.02 2.59 16 27 H 0.13 4.87 5.29 -2.91 -0.02 4.85 16 28 H 0.02 0.52 7.29 -2.38 -0.02 0.51 16 29 H 0.08 2.39 6.24 -2.39 -0.01 2.37 16 30 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 31 H 0.06 3.19 5.93 -2.39 -0.01 3.17 16 32 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 33 H 0.03 1.25 6.66 -2.39 -0.02 1.24 16 34 H 0.26 13.98 8.31 -92.71 -0.77 13.21 16 35 H 0.41 8.57 8.85 -92.71 -0.82 7.75 16 36 H 0.41 12.07 8.11 -92.70 -0.75 11.32 16 37 H 0.16 4.15 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -61.53 305.13 3.22 -58.32 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: -0.46 Total: 22.69 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: 4.71 Total: -12.07 kcal Atomic # 7 Polarization: -94.57 SS G_CDS: -2.86 Total: -97.43 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: -0.97 Total: -12.98 kcal Atomic # 9 Polarization: -5.14 SS G_CDS: 0.77 Total: -4.37 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -61.53 3.22 -58.32 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104142014.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.643 kcal (2) G-P(sol) polarization free energy of solvation -61.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds