Wall clock time and date at job start Mon Mar 30 2020 06:53:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46899 * 109.47215 * 2 1 4 4 C 1.46900 * 111.00409 * 193.95456 * 3 2 1 5 5 C 1.50695 * 109.46838 * 66.04867 * 4 3 2 6 6 H 1.08002 * 120.00120 * 0.02562 * 5 4 3 7 7 C 1.37884 * 120.00082 * 179.97438 * 5 4 3 8 8 N 1.31512 * 120.00145 * 179.97438 * 7 5 4 9 9 Si 1.86790 * 119.99794 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47426 * 89.99860 * 9 7 5 11 11 H 1.48497 * 109.47240 * 209.99807 * 9 7 5 12 12 H 1.48507 * 109.47352 * 329.99600 * 9 7 5 13 13 C 1.40155 * 110.99545 * 70.00463 * 3 2 1 14 14 C 1.38668 * 120.04835 * 63.95438 * 13 3 2 15 15 C 1.38630 * 119.96955 * 180.02562 * 14 13 3 16 16 O 1.36048 * 119.96547 * 179.97438 * 15 14 13 17 17 C 1.42903 * 116.99992 * 359.97438 * 16 15 14 18 18 C 1.38857 * 120.06848 * 0.25344 * 15 14 13 19 19 F 1.35098 * 119.94972 * 179.74623 * 18 15 14 20 20 C 1.38390 * 120.09395 * 359.48906 * 18 15 14 21 21 C 1.38665 * 120.02949 * 0.51294 * 20 18 15 22 22 N 1.40267 * 120.03458 * 179.76785 * 21 20 18 23 23 H 1.08996 * 109.46992 * 59.99384 * 1 2 3 24 24 H 1.09000 * 109.46854 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.46542 * 299.99415 * 1 2 3 26 26 H 1.09006 * 109.46858 * 240.00537 * 2 1 3 27 27 H 1.08996 * 109.47440 * 120.00905 * 2 1 3 28 28 H 1.09000 * 109.47358 * 186.05242 * 4 3 2 29 29 H 1.09003 * 109.47109 * 306.05087 * 4 3 2 30 30 H 0.96999 * 120.00495 * 180.02562 * 8 7 5 31 31 H 1.07997 * 120.01575 * 0.03816 * 14 13 3 32 32 H 1.09002 * 109.47382 * 300.00314 * 17 16 15 33 33 H 1.09001 * 109.46938 * 180.02562 * 17 16 15 34 34 H 1.09004 * 109.46926 * 60.00421 * 17 16 15 35 35 H 1.08001 * 119.98378 * 180.25598 * 20 18 15 36 36 H 0.96994 * 120.00450 * 179.97438 * 22 21 20 37 37 H 0.97006 * 119.99622 * 359.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4500 1.4377 -0.3307 5 6 3.6535 0.9856 -1.7538 6 1 2.8051 0.6891 -2.3528 7 6 4.9227 0.9514 -2.2915 8 7 5.1003 0.5563 -3.5333 9 14 6.3899 1.4648 -1.2558 10 1 6.9298 0.2806 -0.5407 11 1 7.4421 2.0339 -2.1357 12 1 5.9644 2.4883 -0.2674 13 6 1.7653 2.0076 1.2296 14 6 2.3697 1.5358 2.3850 15 6 2.1165 2.1525 3.6005 16 8 2.7092 1.6893 4.7341 17 6 3.5797 0.5642 4.5978 18 6 1.2540 3.2390 3.6630 19 9 1.0049 3.8350 4.8496 20 6 0.6534 3.7154 2.5109 21 6 0.9038 3.1015 1.2930 22 7 0.2913 3.5813 0.1259 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3632 0.5137 0.8900 26 1 1.8933 -0.5138 -0.8901 27 1 1.8934 -0.5139 0.8899 28 1 3.8113 2.4600 -0.2190 29 1 4.0028 0.7815 0.3416 30 1 5.9932 0.5319 -3.9115 31 1 3.0377 0.6885 2.3380 32 1 3.0217 -0.2801 4.1930 33 1 3.9842 0.2975 5.5742 34 1 4.3970 0.8170 3.9223 35 1 -0.0139 4.5631 2.5609 36 1 0.4671 3.1518 -0.7259 37 1 -0.3081 4.3426 0.1706 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110627188.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:09 Heat of formation + Delta-G solvation = -46.196961 kcal Electronic energy + Delta-G solvation = -21075.616819 eV Core-core repulsion = 17768.023673 eV Total energy + Delta-G solvation = -3307.593146 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.133 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.54763 -40.07501 -38.24723 -36.07070 -33.40011 -32.65017 -30.63556 -29.48144 -28.45976 -27.21284 -25.79974 -23.01320 -22.23475 -21.58908 -20.09899 -18.01673 -17.43985 -17.01451 -16.71230 -15.92907 -15.31053 -15.10065 -14.95791 -14.83656 -14.57952 -14.27572 -13.88909 -13.44713 -13.31863 -12.57882 -12.47225 -12.38757 -12.30578 -11.74916 -11.51439 -11.42678 -11.27944 -11.15016 -10.81994 -10.55908 -10.36148 -9.91901 -9.50805 -9.38886 -8.67132 -8.47789 -7.73821 -6.91841 -6.14510 -4.12804 1.33954 1.73532 3.21290 3.30439 3.33350 3.38743 3.85973 4.11999 4.34011 4.44873 4.67424 4.96152 5.14043 5.17791 5.24592 5.42625 5.53719 5.58945 5.67401 5.71454 5.88497 5.95712 6.07273 6.20461 6.27684 6.45292 6.55610 6.64252 6.71879 6.82105 6.92032 7.46488 7.50277 7.67943 7.76562 8.09860 8.20629 8.56062 8.92646 9.46691 10.98058 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.018008 B = 0.006706 C = 0.005862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.522658 B = 4174.086820 C = 4775.597068 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.060 3.940 3 N -0.489 5.489 4 C 0.169 3.831 5 C -0.513 4.513 6 H 0.083 0.917 7 C 0.072 3.928 8 N -0.897 5.897 9 Si 0.871 3.129 10 H -0.277 1.277 11 H -0.284 1.284 12 H -0.266 1.266 13 C 0.063 3.937 14 C -0.164 4.164 15 C 0.039 3.961 16 O -0.318 6.318 17 C 0.029 3.971 18 C 0.102 3.898 19 F -0.139 7.139 20 C -0.205 4.205 21 C 0.235 3.765 22 N -0.861 5.861 23 H 0.059 0.941 24 H 0.050 0.950 25 H 0.045 0.955 26 H 0.095 0.905 27 H 0.023 0.977 28 H 0.030 0.970 29 H -0.014 1.014 30 H 0.265 0.735 31 H 0.134 0.866 32 H 0.053 0.947 33 H 0.097 0.903 34 H 0.054 0.946 35 H 0.137 0.863 36 H 0.414 0.586 37 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.836 2.244 12.106 14.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.067 4.067 3 N -0.210 5.210 4 C 0.044 3.956 5 C -0.551 4.551 6 H 0.101 0.899 7 C -0.130 4.130 8 N -0.535 5.535 9 Si 0.698 3.302 10 H -0.203 1.203 11 H -0.210 1.210 12 H -0.191 1.191 13 C -0.036 4.036 14 C -0.185 4.185 15 C -0.009 4.009 16 O -0.232 6.232 17 C -0.066 4.066 18 C 0.082 3.918 19 F -0.118 7.118 20 C -0.230 4.230 21 C 0.127 3.873 22 N -0.401 5.401 23 H 0.078 0.922 24 H 0.069 0.931 25 H 0.064 0.936 26 H 0.113 0.887 27 H 0.041 0.959 28 H 0.048 0.952 29 H 0.004 0.996 30 H 0.075 0.925 31 H 0.152 0.848 32 H 0.071 0.929 33 H 0.115 0.885 34 H 0.072 0.928 35 H 0.155 0.845 36 H 0.246 0.754 37 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -7.939 2.520 11.813 14.454 hybrid contribution 1.380 -0.146 0.804 1.604 sum -6.559 2.374 12.617 14.417 Atomic orbital electron populations 1.21754 0.96079 1.00560 1.01692 1.22106 0.94580 0.88448 1.01551 1.59708 1.20561 1.16639 1.24127 1.20234 0.81735 0.96548 0.97059 1.20983 0.94563 1.44243 0.95303 0.89885 1.24858 0.98589 0.94784 0.94802 1.69876 1.22583 1.47474 1.13589 0.86929 0.83078 0.79452 0.80761 1.20289 1.21025 1.19065 1.18427 0.98645 0.96603 0.89918 1.21519 1.03194 1.02196 0.91640 1.18544 0.98980 0.96879 0.86452 1.86056 1.59923 1.47589 1.29642 1.22998 0.92897 0.87302 1.03390 1.16492 1.00172 0.93826 0.81305 1.91444 1.93146 1.82716 1.44461 1.20121 1.07909 1.05041 0.89912 1.17235 0.91809 0.91624 0.86605 1.42461 1.52388 1.37321 1.07915 0.92191 0.93082 0.93581 0.88678 0.95897 0.95161 0.99591 0.92547 0.84845 0.92866 0.88497 0.92754 0.84509 0.75425 0.78164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.95 37.16 0.37 -1.77 16 2 C 0.06 1.07 5.45 -3.82 -0.02 1.05 16 3 N -0.49 -9.46 3.62 -172.25 -0.62 -10.09 16 4 C 0.17 3.90 3.38 -4.98 -0.02 3.88 16 5 C -0.51 -13.73 8.87 -34.44 -0.31 -14.03 16 6 H 0.08 2.39 7.47 -52.49 -0.39 2.00 16 7 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 8 N -0.90 -26.48 13.96 55.43 0.77 -25.70 16 9 Si 0.87 20.93 27.47 -169.99 -4.67 16.26 16 10 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 13 C 0.06 1.11 3.77 -83.47 -0.31 0.80 16 14 C -0.16 -2.79 7.52 -39.28 -0.30 -3.09 16 15 C 0.04 0.65 6.69 -39.21 -0.26 0.38 16 16 O -0.32 -5.02 10.36 -19.89 -0.21 -5.23 16 17 C 0.03 0.35 9.81 101.05 0.99 1.35 16 18 C 0.10 1.65 7.30 -39.30 -0.29 1.37 16 19 F -0.14 -2.26 17.10 2.25 0.04 -2.22 16 20 C -0.21 -2.98 9.86 -39.37 -0.39 -3.37 16 21 C 0.23 3.66 6.78 -83.41 -0.57 3.10 16 22 N -0.86 -11.46 9.10 32.57 0.30 -11.16 16 23 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.68 7.52 -51.93 -0.39 0.29 16 26 H 0.09 1.91 6.60 -51.93 -0.34 1.57 16 27 H 0.02 0.39 7.08 -51.93 -0.37 0.03 16 28 H 0.03 0.74 7.12 -51.93 -0.37 0.37 16 29 H -0.01 -0.31 6.91 -51.93 -0.36 -0.67 16 30 H 0.26 7.35 8.31 -40.82 -0.34 7.02 16 31 H 0.13 2.21 5.37 -52.49 -0.28 1.93 16 32 H 0.05 0.60 7.66 -51.93 -0.40 0.20 16 33 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.05 0.66 7.66 -51.93 -0.40 0.26 16 35 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 36 H 0.41 6.06 8.11 -40.82 -0.33 5.73 16 37 H 0.39 3.96 8.85 -40.82 -0.36 3.60 16 LS Contribution 308.33 15.07 4.65 4.65 Total: -1.00 -29.87 308.33 -5.78 -35.65 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -4.85 Total: 6.28 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -1.19 Total: -8.43 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: 0.45 Total: -46.95 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: -0.21 Total: -5.23 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.04 Total: -2.22 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -4.67 Total: 16.26 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -29.87 -5.78 -35.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110627188.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.547 kcal (2) G-P(sol) polarization free energy of solvation -29.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds