Wall clock time and date at job start Mon Mar 30 2020 06:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42897 * 109.47533 * 2 1 4 4 C 1.36047 * 117.00349 * 179.97438 * 3 2 1 5 5 C 1.38676 * 119.96270 * 0.02562 * 4 3 2 6 6 C 1.38625 * 119.96686 * 179.97438 * 5 4 3 7 7 N 1.40145 * 120.04647 * 180.02562 * 6 5 4 8 8 C 1.46901 * 111.00274 * 296.04806 * 7 6 5 9 9 C 1.46906 * 111.00024 * 60.00143 * 7 6 5 10 10 C 1.50696 * 109.47351 * 169.99963 * 9 7 6 11 11 H 1.08007 * 119.99780 * 0.02562 * 10 9 7 12 12 C 1.37878 * 120.00506 * 180.02562 * 10 9 7 13 13 N 1.31510 * 120.00248 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 119.99357 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.46811 * 90.00524 * 14 12 10 16 16 H 1.48502 * 109.46643 * 209.99901 * 14 12 10 17 17 H 1.48499 * 109.47300 * 329.99977 * 14 12 10 18 18 C 1.39424 * 119.90715 * 0.27561 * 6 5 4 19 19 N 1.40266 * 120.03510 * 179.70562 * 18 6 5 20 20 C 1.38637 * 119.92757 * 359.49461 * 18 6 5 21 21 C 1.38427 * 120.02916 * 0.48239 * 20 18 6 22 22 F 1.35100 * 119.95025 * 179.74578 * 21 20 18 23 23 H 1.09002 * 109.47082 * 60.00042 * 1 2 3 24 24 H 1.08999 * 109.47395 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47304 * 300.00314 * 1 2 3 26 26 H 1.08999 * 109.47304 * 239.99686 * 2 1 3 27 27 H 1.09003 * 109.46651 * 120.00273 * 2 1 3 28 28 H 1.07996 * 120.01472 * 0.02562 * 5 4 3 29 29 H 1.09002 * 109.47401 * 183.95277 * 8 7 6 30 30 H 1.09001 * 109.46874 * 63.95289 * 8 7 6 31 31 H 1.09004 * 109.46970 * 303.95423 * 8 7 6 32 32 H 1.08997 * 109.46995 * 289.99943 * 9 7 6 33 33 H 1.09001 * 109.46848 * 49.99950 * 9 7 6 34 34 H 0.96999 * 119.99895 * 180.02562 * 13 12 10 35 35 H 0.96994 * 120.00066 * 359.97438 * 19 18 6 36 36 H 0.97006 * 119.99982 * 180.02562 * 19 18 6 37 37 H 1.07998 * 119.98161 * 180.25712 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3551 1.5254 0.0005 5 6 4.1992 0.4251 0.0005 6 6 5.5735 0.6066 0.0005 7 7 6.4280 -0.5041 0.0000 8 6 6.2718 -1.2892 1.2317 9 6 6.2054 -1.3390 -1.1882 10 6 7.2939 -2.3768 -1.2840 11 1 8.0729 -2.4129 -0.5367 12 6 7.2954 -3.2802 -2.3255 13 7 8.2450 -4.1862 -2.4088 14 14 5.9476 -3.2181 -3.6175 15 1 6.3638 -2.3195 -4.7241 16 1 5.7104 -4.5835 -4.1513 17 1 4.6974 -2.7022 -3.0043 18 6 6.1044 1.8958 0.0064 19 7 7.4946 2.0826 0.0127 20 6 5.2568 2.9929 0.0016 21 6 3.8849 2.8085 0.0011 22 9 3.0604 3.8787 0.0016 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5139 0.8900 28 1 3.7860 -0.5727 -0.0003 29 1 6.9950 -2.1047 1.2371 30 1 5.2624 -1.6985 1.2762 31 1 6.4418 -0.6470 2.0959 32 1 5.2376 -1.8339 -1.1083 33 1 6.2209 -0.7128 -2.0802 34 1 8.2462 -4.8215 -3.1418 35 1 8.0871 1.3146 0.0133 36 1 7.8634 2.9798 0.0171 37 1 5.6672 3.9919 0.0019 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110632384.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:51 Heat of formation + Delta-G solvation = -48.164083 kcal Electronic energy + Delta-G solvation = -20763.005822 eV Core-core repulsion = 17455.327375 eV Total energy + Delta-G solvation = -3307.678447 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.133 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.54876 -40.04612 -38.27128 -35.88128 -33.57623 -32.55980 -31.45047 -29.58212 -28.04492 -27.34836 -25.09708 -23.81059 -22.17594 -21.45454 -20.33468 -18.09270 -17.32459 -17.13614 -16.74917 -16.17325 -15.23867 -15.17592 -15.12350 -14.66111 -14.59551 -14.01788 -13.70679 -13.47557 -12.99574 -12.83722 -12.57118 -12.49707 -12.43091 -12.12589 -11.72014 -11.52614 -11.20192 -11.10378 -10.96117 -10.60549 -10.55823 -10.02304 -9.50218 -9.40732 -8.65657 -8.49169 -7.73580 -6.92756 -6.14095 -4.12460 1.33060 1.73013 3.22773 3.27823 3.30375 3.32259 3.85195 4.10828 4.34191 4.48269 4.68234 4.89240 4.90785 5.07343 5.18103 5.22457 5.35477 5.50728 5.69695 5.73718 5.78427 5.93241 5.96809 6.06399 6.09049 6.21131 6.48275 6.58914 6.71855 6.76662 6.91584 7.46844 7.50643 7.66169 7.74563 8.08173 8.19798 8.55921 8.92759 9.47033 10.98520 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.016573 B = 0.006556 C = 0.005309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.112008 B = 4269.727497 C = 5272.922873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 O -0.316 6.316 4 C 0.042 3.958 5 C -0.163 4.163 6 C 0.058 3.942 7 N -0.493 5.493 8 C 0.042 3.958 9 C 0.168 3.832 10 C -0.513 4.513 11 H 0.083 0.917 12 C 0.072 3.928 13 N -0.897 5.897 14 Si 0.872 3.128 15 H -0.275 1.275 16 H -0.285 1.285 17 H -0.268 1.268 18 C 0.234 3.766 19 N -0.862 5.862 20 C -0.204 4.204 21 C 0.103 3.897 22 F -0.139 7.139 23 H 0.065 0.935 24 H 0.076 0.924 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.134 0.866 29 H 0.084 0.916 30 H 0.017 0.983 31 H 0.050 0.950 32 H -0.008 1.008 33 H 0.025 0.975 34 H 0.265 0.735 35 H 0.414 0.586 36 H 0.392 0.608 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.515 10.871 5.938 15.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.021 4.021 3 O -0.231 6.231 4 C -0.005 4.005 5 C -0.185 4.185 6 C -0.040 4.040 7 N -0.215 5.215 8 C -0.105 4.105 9 C 0.043 3.957 10 C -0.551 4.551 11 H 0.101 0.899 12 C -0.131 4.131 13 N -0.536 5.536 14 Si 0.699 3.301 15 H -0.200 1.200 16 H -0.211 1.211 17 H -0.193 1.193 18 C 0.126 3.874 19 N -0.402 5.402 20 C -0.229 4.229 21 C 0.082 3.918 22 F -0.117 7.117 23 H 0.084 0.916 24 H 0.095 0.905 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.151 0.849 29 H 0.103 0.897 30 H 0.036 0.964 31 H 0.069 0.931 32 H 0.010 0.990 33 H 0.043 0.957 34 H 0.075 0.925 35 H 0.246 0.754 36 H 0.219 0.781 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.157 11.003 5.807 15.448 hybrid contribution -1.176 -0.434 -0.855 1.518 sum -10.333 10.569 4.951 15.588 Atomic orbital electron populations 1.21746 0.92912 1.02657 1.03289 1.22730 0.95624 0.82269 1.01478 1.86052 1.18229 1.28791 1.89997 1.18503 0.83061 0.92407 1.06555 1.21535 0.94184 0.97927 1.04833 1.18464 0.89281 0.91749 1.04556 1.59659 1.49591 1.07829 1.04371 1.22289 1.00129 0.97682 0.90362 1.20258 0.96246 0.91893 0.87264 1.20978 1.10240 1.12371 1.11491 0.89931 1.24858 0.95576 0.95110 0.97511 1.69878 1.32918 1.18577 1.32189 0.86915 0.83077 0.77552 0.82569 1.20044 1.21082 1.19311 1.17245 0.84959 0.90980 0.94205 1.42456 1.02880 1.10823 1.83994 1.20120 0.90287 0.98846 1.13635 1.16490 0.87114 0.80566 1.07591 1.91445 1.71915 1.54057 1.94315 0.91632 0.90490 0.91670 0.92126 0.92226 0.84868 0.89688 0.96442 0.93124 0.99041 0.95651 0.92545 0.75408 0.78124 0.84467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 10.28 37.16 0.38 -1.10 16 2 C 0.05 0.70 5.46 37.16 0.20 0.90 16 3 O -0.32 -5.04 10.00 -19.89 -0.20 -5.24 16 4 C 0.04 0.71 6.69 -39.21 -0.26 0.45 16 5 C -0.16 -2.81 7.69 -39.28 -0.30 -3.12 16 6 C 0.06 1.05 4.70 -83.47 -0.39 0.66 16 7 N -0.49 -9.78 3.89 -180.10 -0.70 -10.48 16 8 C 0.04 0.77 9.09 60.07 0.55 1.31 16 9 C 0.17 3.93 3.38 -4.97 -0.02 3.92 16 10 C -0.51 -13.88 9.07 -34.44 -0.31 -14.19 16 11 H 0.08 2.40 7.35 -52.48 -0.39 2.02 16 12 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 13 N -0.90 -26.63 13.96 55.43 0.77 -25.86 16 14 Si 0.87 21.06 27.47 -169.99 -4.67 16.39 16 15 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 16 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 17 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 18 C 0.23 3.70 6.78 -83.41 -0.57 3.14 16 19 N -0.86 -11.66 9.10 32.58 0.30 -11.36 16 20 C -0.20 -2.98 9.86 -39.36 -0.39 -3.37 16 21 C 0.10 1.66 7.30 -39.30 -0.29 1.38 16 22 F -0.14 -2.25 17.10 2.25 0.04 -2.21 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.80 7.66 -51.93 -0.40 0.40 16 27 H 0.06 0.72 7.66 -51.93 -0.40 0.32 16 28 H 0.13 2.26 5.40 -52.49 -0.28 1.97 16 29 H 0.08 1.67 6.86 -51.93 -0.36 1.31 16 30 H 0.02 0.30 7.48 -51.93 -0.39 -0.09 16 31 H 0.05 0.81 8.13 -51.93 -0.42 0.38 16 32 H -0.01 -0.19 6.54 -51.93 -0.34 -0.53 16 33 H 0.03 0.62 7.49 -51.93 -0.39 0.23 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.41 6.14 8.11 -40.82 -0.33 5.81 16 36 H 0.39 4.02 8.85 -40.82 -0.36 3.66 16 37 H 0.14 1.63 8.06 -52.49 -0.42 1.20 16 LS Contribution 310.34 15.07 4.68 4.68 Total: -1.00 -30.16 310.34 -6.18 -36.35 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -4.91 Total: 5.85 kcal Atomic # 6 Polarization: -6.62 SS G_CDS: -1.49 Total: -8.12 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: 0.37 Total: -47.70 kcal Atomic # 8 Polarization: -5.04 SS G_CDS: -0.20 Total: -5.24 kcal Atomic # 9 Polarization: -2.25 SS G_CDS: 0.04 Total: -2.21 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.67 Total: 16.39 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.16 -6.18 -36.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110632384.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.815 kcal (2) G-P(sol) polarization free energy of solvation -30.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds