Wall clock time and date at job start Mon Mar 30 2020 06:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42897 * 109.47533 * 2 1 4 4 C 1.36047 * 117.00349 * 179.97438 * 3 2 1 5 5 C 1.38676 * 119.96270 * 0.02562 * 4 3 2 6 6 C 1.38625 * 119.96686 * 179.97438 * 5 4 3 7 7 N 1.40145 * 120.04647 * 180.02562 * 6 5 4 8 8 C 1.46901 * 111.00274 * 296.04806 * 7 6 5 9 9 C 1.46906 * 111.00024 * 60.00143 * 7 6 5 10 10 C 1.50696 * 109.47351 * 169.99963 * 9 7 6 11 11 H 1.08007 * 119.99780 * 0.02562 * 10 9 7 12 12 C 1.37878 * 120.00506 * 180.02562 * 10 9 7 13 13 N 1.31510 * 120.00248 * 180.02562 * 12 10 9 14 14 Si 1.86802 * 119.99357 * 359.97438 * 12 10 9 15 15 H 1.48499 * 109.46811 * 90.00524 * 14 12 10 16 16 H 1.48502 * 109.46643 * 209.99901 * 14 12 10 17 17 H 1.48499 * 109.47300 * 329.99977 * 14 12 10 18 18 C 1.39424 * 119.90715 * 0.27561 * 6 5 4 19 19 N 1.40266 * 120.03510 * 179.70562 * 18 6 5 20 20 C 1.38637 * 119.92757 * 359.49461 * 18 6 5 21 21 C 1.38427 * 120.02916 * 0.48239 * 20 18 6 22 22 F 1.35100 * 119.95025 * 179.74578 * 21 20 18 23 23 H 1.09002 * 109.47082 * 60.00042 * 1 2 3 24 24 H 1.08999 * 109.47395 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47304 * 300.00314 * 1 2 3 26 26 H 1.08999 * 109.47304 * 239.99686 * 2 1 3 27 27 H 1.09003 * 109.46651 * 120.00273 * 2 1 3 28 28 H 1.07996 * 120.01472 * 0.02562 * 5 4 3 29 29 H 1.09002 * 109.47401 * 183.95277 * 8 7 6 30 30 H 1.09001 * 109.46874 * 63.95289 * 8 7 6 31 31 H 1.09004 * 109.46970 * 303.95423 * 8 7 6 32 32 H 1.08997 * 109.46995 * 289.99943 * 9 7 6 33 33 H 1.09001 * 109.46848 * 49.99950 * 9 7 6 34 34 H 0.96999 * 119.99895 * 180.02562 * 13 12 10 35 35 H 0.96994 * 120.00066 * 359.97438 * 19 18 6 36 36 H 0.97006 * 119.99982 * 180.02562 * 19 18 6 37 37 H 1.07998 * 119.98161 * 180.25712 * 20 18 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3551 1.5254 0.0005 5 6 4.1992 0.4251 0.0005 6 6 5.5735 0.6066 0.0005 7 7 6.4280 -0.5041 0.0000 8 6 6.2718 -1.2892 1.2317 9 6 6.2054 -1.3390 -1.1882 10 6 7.2939 -2.3768 -1.2840 11 1 8.0729 -2.4129 -0.5367 12 6 7.2954 -3.2802 -2.3255 13 7 8.2450 -4.1862 -2.4088 14 14 5.9476 -3.2181 -3.6175 15 1 6.3638 -2.3195 -4.7241 16 1 5.7104 -4.5835 -4.1513 17 1 4.6974 -2.7022 -3.0043 18 6 6.1044 1.8958 0.0064 19 7 7.4946 2.0826 0.0127 20 6 5.2568 2.9929 0.0016 21 6 3.8849 2.8085 0.0011 22 9 3.0604 3.8787 0.0016 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8932 -0.5139 0.8900 28 1 3.7860 -0.5727 -0.0003 29 1 6.9950 -2.1047 1.2371 30 1 5.2624 -1.6985 1.2762 31 1 6.4418 -0.6470 2.0959 32 1 5.2376 -1.8339 -1.1083 33 1 6.2209 -0.7128 -2.0802 34 1 8.2462 -4.8215 -3.1418 35 1 8.0871 1.3146 0.0133 36 1 7.8634 2.9798 0.0171 37 1 5.6672 3.9919 0.0019 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000110632384.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:53:51 Heat of formation + Delta-G solvation = -68.482594 kcal Electronic energy + Delta-G solvation = -20763.886898 eV Core-core repulsion = 17455.327375 eV Total energy + Delta-G solvation = -3308.559524 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 268.133 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.80664 -41.31329 -39.52217 -37.34536 -34.73868 -34.61929 -32.41048 -31.03764 -29.76887 -28.63297 -26.57772 -25.09785 -23.61895 -22.65060 -21.86512 -19.47809 -18.85703 -18.45313 -18.23161 -17.31052 -16.70387 -16.56118 -16.39196 -16.27730 -15.79552 -15.58422 -15.05752 -14.93299 -14.46154 -14.06087 -14.00233 -13.82514 -13.51758 -13.43366 -13.15363 -12.92690 -12.80002 -12.52213 -12.32273 -12.05349 -11.95242 -11.90965 -11.50387 -10.80036 -10.68216 -9.76001 -9.32428 -8.29780 -8.13300 -6.32454 0.05279 0.48222 1.32351 1.33988 1.42915 2.19015 2.31637 2.58426 2.93382 3.01653 3.06932 3.43566 3.74174 3.99048 4.00368 4.19931 4.31941 4.36391 4.46778 4.59139 4.69058 4.71973 4.82959 4.84213 4.90276 4.91042 4.96626 5.12436 5.18611 5.27856 5.49774 5.61438 5.93509 6.23360 6.33667 6.51530 6.73767 6.81322 7.15258 7.30933 8.86096 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.016573 B = 0.006556 C = 0.005309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.112008 B = 4269.727497 C = 5272.922873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.046 3.954 3 O -0.328 6.328 4 C 0.033 3.967 5 C -0.165 4.165 6 C 0.030 3.970 7 N -0.494 5.494 8 C 0.046 3.954 9 C 0.181 3.819 10 C -0.512 4.512 11 H 0.049 0.951 12 C 0.016 3.984 13 N -0.942 5.942 14 Si 0.934 3.066 15 H -0.269 1.269 16 H -0.280 1.280 17 H -0.254 1.254 18 C 0.233 3.767 19 N -0.852 5.852 20 C -0.190 4.190 21 C 0.098 3.902 22 F -0.139 7.139 23 H 0.064 0.936 24 H 0.098 0.902 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.064 0.936 28 H 0.131 0.869 29 H 0.062 0.938 30 H 0.022 0.978 31 H 0.074 0.926 32 H -0.009 1.009 33 H 0.019 0.981 34 H 0.267 0.733 35 H 0.409 0.591 36 H 0.408 0.592 37 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.973 12.432 5.841 17.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.029 4.029 3 O -0.243 6.243 4 C -0.015 4.015 5 C -0.186 4.186 6 C -0.069 4.069 7 N -0.215 5.215 8 C -0.101 4.101 9 C 0.055 3.945 10 C -0.550 4.550 11 H 0.067 0.933 12 C -0.182 4.182 13 N -0.583 5.583 14 Si 0.759 3.241 15 H -0.195 1.195 16 H -0.206 1.206 17 H -0.178 1.178 18 C 0.125 3.875 19 N -0.392 5.392 20 C -0.214 4.214 21 C 0.077 3.923 22 F -0.118 7.118 23 H 0.083 0.917 24 H 0.117 0.883 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.083 0.917 28 H 0.148 0.852 29 H 0.080 0.920 30 H 0.041 0.959 31 H 0.093 0.907 32 H 0.008 0.992 33 H 0.037 0.963 34 H 0.076 0.924 35 H 0.239 0.761 36 H 0.239 0.761 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -10.613 12.604 5.728 17.444 hybrid contribution -0.689 -0.861 -0.734 1.325 sum -11.302 11.742 4.994 17.046 Atomic orbital electron populations 1.21772 0.90651 1.04160 1.03481 1.22988 0.97447 0.81049 1.01413 1.86050 1.17770 1.30563 1.89930 1.18610 0.83488 0.92567 1.06792 1.21455 0.93990 0.98063 1.05098 1.18530 0.89416 0.91660 1.07264 1.59496 1.50577 1.07899 1.03509 1.22250 0.99666 0.97460 0.90698 1.19957 0.94496 0.91219 0.88812 1.21180 1.10244 1.13199 1.10380 0.93253 1.25678 0.97893 0.94784 0.99856 1.70014 1.35130 1.19762 1.33351 0.85905 0.80604 0.77802 0.79823 1.19459 1.20591 1.17813 1.17311 0.85943 0.90489 0.93782 1.42435 1.01970 1.11700 1.83128 1.20354 0.89437 0.99884 1.11724 1.16720 0.87751 0.80418 1.07384 1.91444 1.72069 1.53966 1.94301 0.91675 0.88324 0.91219 0.92750 0.91735 0.85161 0.91953 0.95940 0.90745 0.99177 0.96250 0.92399 0.76056 0.76118 0.81322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.57 10.28 71.98 0.74 -1.83 16 2 C 0.05 1.12 5.46 71.98 0.39 1.51 16 3 O -0.33 -10.04 10.00 -94.08 -0.94 -10.98 16 4 C 0.03 1.06 6.69 22.51 0.15 1.21 16 5 C -0.16 -5.48 7.69 22.47 0.17 -5.31 16 6 C 0.03 1.05 4.70 38.19 0.18 1.23 16 7 N -0.49 -19.34 3.89 -723.70 -2.81 -22.15 16 8 C 0.05 1.66 9.09 127.69 1.16 2.82 16 9 C 0.18 8.41 3.38 85.55 0.29 8.70 16 10 C -0.51 -28.20 9.07 25.60 0.23 -27.97 16 11 H 0.05 2.98 7.35 -2.91 -0.02 2.96 16 12 C 0.02 0.90 5.47 84.66 0.46 1.37 16 13 N -0.94 -57.07 13.96 21.45 0.30 -56.77 16 14 Si 0.93 43.24 27.47 68.60 1.88 45.12 16 15 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 16 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 17 H -0.25 -11.08 6.54 99.48 0.65 -10.43 16 18 C 0.23 6.88 6.78 38.17 0.26 7.14 16 19 N -0.85 -21.20 9.10 -50.85 -0.46 -21.66 16 20 C -0.19 -4.98 9.86 22.41 0.22 -4.76 16 21 C 0.10 2.94 7.30 22.45 0.16 3.11 16 22 F -0.14 -4.20 17.10 44.97 0.77 -3.44 16 23 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 25 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.05 1.38 7.66 -2.39 -0.02 1.36 16 27 H 0.06 1.48 7.66 -2.39 -0.02 1.47 16 28 H 0.13 4.32 5.40 -2.91 -0.02 4.30 16 29 H 0.06 2.50 6.86 -2.39 -0.02 2.49 16 30 H 0.02 0.77 7.48 -2.39 -0.02 0.75 16 31 H 0.07 2.30 8.13 -2.38 -0.02 2.28 16 32 H -0.01 -0.44 6.54 -2.39 -0.02 -0.45 16 33 H 0.02 0.93 7.49 -2.39 -0.02 0.91 16 34 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 35 H 0.41 11.55 8.11 -92.71 -0.75 10.80 16 36 H 0.41 7.23 8.85 -92.70 -0.82 6.41 16 37 H 0.17 3.30 8.06 -2.91 -0.02 3.27 16 Total: -1.00 -64.62 310.34 2.64 -61.98 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: -0.52 Total: 20.67 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: 4.42 Total: -12.77 kcal Atomic # 7 Polarization: -97.61 SS G_CDS: -2.98 Total: -100.59 kcal Atomic # 8 Polarization: -10.04 SS G_CDS: -0.94 Total: -10.98 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.77 Total: -3.44 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.88 Total: 45.12 kcal Total: -64.62 2.64 -61.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110632384.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.501 kcal (2) G-P(sol) polarization free energy of solvation -64.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds