Wall clock time and date at job start Mon Mar 30 2020 06:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46910 * 2 1 4 4 C 1.50699 * 109.46585 * 240.00547 * 2 1 3 5 5 H 1.07999 * 120.00502 * 239.99501 * 4 2 1 6 6 C 1.37884 * 120.00100 * 60.00102 * 4 2 1 7 7 N 1.31515 * 119.99959 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99889 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47115 * 90.00404 * 8 6 4 10 10 H 1.48505 * 109.46978 * 209.99860 * 8 6 4 11 11 H 1.48496 * 109.47635 * 330.00012 * 8 6 4 12 12 N 1.46897 * 109.47295 * 120.00622 * 2 1 3 13 13 C 1.46892 * 110.99920 * 274.99974 * 12 2 1 14 14 C 1.50707 * 109.47085 * 180.02562 * 13 12 2 15 15 C 1.33635 * 126.04014 * 89.95639 * 14 13 12 16 16 N 1.31783 * 114.50226 * 179.79203 * 15 14 13 17 17 C 1.29031 * 117.12299 * 0.47059 * 16 15 14 18 18 C 1.50699 * 124.91690 * 179.81484 * 17 16 15 19 19 C 1.52997 * 109.47078 * 59.69700 * 18 17 16 20 20 C 1.52992 * 109.46956 * 299.69388 * 18 17 16 21 21 C 1.53006 * 109.46866 * 179.69522 * 18 17 16 22 22 S 1.70986 * 110.16462 * 359.55104 * 17 16 15 23 23 H 1.08998 * 109.47591 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46838 * 299.99257 * 1 2 3 25 25 H 1.08997 * 109.47470 * 59.99411 * 1 2 3 26 26 H 0.96996 * 119.99917 * 180.02562 * 7 6 4 27 27 H 1.00899 * 110.99638 * 151.04106 * 12 2 1 28 28 H 1.09002 * 109.47616 * 59.99907 * 13 12 2 29 29 H 1.09000 * 109.47232 * 299.99743 * 13 12 2 30 30 H 1.08005 * 122.74809 * 0.03692 * 15 14 13 31 31 H 1.09002 * 109.47153 * 299.99793 * 19 18 17 32 32 H 1.09001 * 109.46832 * 179.97438 * 19 18 17 33 33 H 1.09004 * 109.47261 * 59.99965 * 19 18 17 34 34 H 1.09001 * 109.47066 * 180.02562 * 20 18 17 35 35 H 1.08996 * 109.47747 * 299.99900 * 20 18 17 36 36 H 1.09002 * 109.47103 * 60.00312 * 20 18 17 37 37 H 1.08993 * 109.46955 * 300.00219 * 21 18 17 38 38 H 1.09000 * 109.47050 * 60.00048 * 21 18 17 39 39 H 1.09001 * 109.47002 * 179.97438 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.6531 -1.5884 -1.1317 6 6 1.6991 -0.2391 -2.4828 7 7 0.9426 0.8300 -2.6033 8 14 2.3222 -1.1192 -4.0081 9 1 1.3444 -2.1610 -4.4126 10 1 2.4869 -0.1397 -5.1122 11 1 3.6305 -1.7563 -3.7124 12 7 2.0197 -0.6926 1.1993 13 6 2.0825 0.2223 2.3468 14 6 2.5886 -0.5219 3.5556 15 6 3.8675 -0.6495 3.9218 16 7 4.0532 -1.3471 5.0243 17 6 3.0029 -1.8230 5.6034 18 6 3.0120 -2.6459 6.8658 19 6 3.6437 -1.8347 7.9988 20 6 3.8251 -3.9216 6.6370 21 6 1.5764 -3.0169 7.2431 22 16 1.5987 -1.3784 4.7350 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 0.7079 1.1612 -3.4843 27 1 2.9173 -1.1206 1.0285 28 1 1.0871 0.6161 2.5526 29 1 2.7589 1.0459 2.1182 30 1 4.6818 -0.2131 3.3624 31 1 4.6665 -1.5704 7.7300 32 1 3.6499 -2.4299 8.9120 33 1 3.0644 -0.9259 8.1617 34 1 3.8313 -4.5171 7.5500 35 1 3.3751 -4.4995 5.8299 36 1 4.8478 -3.6573 6.3682 37 1 0.9972 -2.1081 7.4059 38 1 1.1263 -3.5948 6.4358 39 1 1.5830 -3.6125 8.1559 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134973730.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:49 Heat of formation + Delta-G solvation = 23.499028 kcal Electronic energy + Delta-G solvation = -18003.924279 eV Core-core repulsion = 15265.566553 eV Total energy + Delta-G solvation = -2738.357725 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.73447 -36.99562 -35.85552 -32.88177 -30.53571 -27.91608 -27.58434 -27.41702 -25.76832 -25.08873 -23.12077 -20.93469 -19.84663 -18.52423 -17.66171 -16.50045 -15.41212 -15.03753 -14.83601 -14.36249 -14.24519 -13.92847 -13.88527 -13.29924 -13.07847 -12.57758 -12.35316 -12.23892 -12.08857 -11.85582 -11.57742 -11.26177 -11.18358 -11.14867 -11.00527 -10.86168 -10.76382 -10.32278 -10.19133 -10.08786 -9.34869 -9.00831 -8.86724 -8.59082 -8.48272 -7.37806 -6.06546 -4.13232 0.94416 1.57044 2.04335 3.04655 3.28158 3.34556 3.37827 4.05753 4.37638 4.63435 4.73788 4.91317 5.18473 5.25038 5.30736 5.38011 5.44059 5.44610 5.57039 5.64053 5.67845 5.71448 5.79152 5.90213 6.05771 6.08331 6.13012 6.18367 6.43405 6.81429 7.07791 7.15792 7.42088 7.73671 7.82790 7.94055 8.21285 8.30199 8.57769 8.96081 9.52912 10.99794 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.037023 B = 0.003740 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.106125 B = 7485.270656 C = 7690.200016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.211 3.789 3 H 0.003 0.997 4 C -0.519 4.519 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.682 5.682 13 C 0.131 3.869 14 C -0.194 4.194 15 C 0.023 3.977 16 N -0.469 5.469 17 C 0.035 3.965 18 C 0.013 3.987 19 C -0.132 4.132 20 C -0.134 4.134 21 C -0.154 4.154 22 S 0.138 5.862 23 H 0.032 0.968 24 H 0.003 0.997 25 H 0.082 0.918 26 H 0.261 0.739 27 H 0.334 0.666 28 H 0.076 0.924 29 H 0.043 0.957 30 H 0.170 0.830 31 H 0.065 0.935 32 H 0.062 0.938 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.057 0.943 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.367 -4.921 19.259 20.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.104 3.896 3 H 0.021 0.979 4 C -0.558 4.558 5 H 0.078 0.922 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.314 5.314 13 C 0.000 4.000 14 C -0.316 4.316 15 C -0.128 4.128 16 N -0.183 5.183 17 C -0.243 4.243 18 C 0.010 3.990 19 C -0.191 4.191 20 C -0.192 4.192 21 C -0.212 4.212 22 S 0.394 5.606 23 H 0.051 0.949 24 H 0.022 0.978 25 H 0.100 0.900 26 H 0.071 0.929 27 H 0.151 0.849 28 H 0.094 0.906 29 H 0.061 0.939 30 H 0.187 0.813 31 H 0.084 0.916 32 H 0.081 0.919 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.076 0.924 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.102 -5.300 19.615 20.348 hybrid contribution 1.773 0.547 -1.764 2.560 sum 2.875 -4.753 17.851 18.695 Atomic orbital electron populations 1.21728 0.97753 0.99451 0.99405 1.19144 0.92704 0.92425 0.85304 0.97927 1.21235 1.31615 1.12576 0.90341 0.92172 1.24916 0.95006 0.94961 0.99065 1.69892 1.36557 1.22835 1.23558 0.86502 0.79250 0.79322 0.82360 1.20581 1.21238 1.19906 1.60825 1.32469 1.32600 1.05535 1.20311 0.99980 0.92731 0.87011 1.26201 0.96207 1.06266 1.02910 1.21627 0.95853 1.00925 0.94397 1.66111 1.31931 1.11204 1.09020 1.26932 0.91837 1.03670 1.01881 1.19143 0.96910 0.93965 0.89015 1.21823 1.01467 0.99434 0.96396 1.21827 1.00457 0.95203 1.01738 1.22021 0.94414 1.02290 1.02451 1.83911 1.12300 1.46836 1.17579 0.94881 0.97752 0.89954 0.92862 0.84879 0.90552 0.93869 0.81284 0.91575 0.91931 0.92629 0.91939 0.92434 0.91570 0.91867 0.91694 0.90986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.09 9.19 37.16 0.34 -2.75 16 2 C 0.21 5.31 2.60 -68.87 -0.18 5.13 16 3 H 0.00 0.08 7.80 -51.93 -0.41 -0.32 16 4 C -0.52 -14.18 8.59 -34.44 -0.30 -14.48 16 5 H 0.06 1.63 7.62 -52.49 -0.40 1.23 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.25 11.32 55.43 0.63 -24.63 16 8 Si 0.90 21.23 29.54 -169.99 -5.02 16.20 16 9 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.68 -14.56 6.29 -109.22 -0.69 -15.24 16 13 C 0.13 2.37 6.02 -4.98 -0.03 2.34 16 14 C -0.19 -3.13 6.11 -35.92 -0.22 -3.35 16 15 C 0.02 0.36 11.25 -19.19 -0.22 0.14 16 16 N -0.47 -7.17 10.53 -11.86 -0.12 -7.29 16 17 C 0.03 0.47 5.78 -13.46 -0.08 0.39 16 18 C 0.01 0.14 0.99 -155.66 -0.15 -0.02 16 19 C -0.13 -1.21 8.45 37.16 0.31 -0.90 16 20 C -0.13 -1.30 8.45 37.15 0.31 -0.98 16 21 C -0.15 -1.31 7.54 37.16 0.28 -1.03 16 22 S 0.14 1.94 21.57 -107.50 -2.32 -0.38 16 23 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 25 H 0.08 2.21 6.07 -51.93 -0.32 1.90 16 26 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 27 H 0.33 7.07 8.22 -39.29 -0.32 6.75 16 28 H 0.08 1.39 7.44 -51.93 -0.39 1.00 16 29 H 0.04 0.77 8.06 -51.93 -0.42 0.35 16 30 H 0.17 2.40 8.06 -52.48 -0.42 1.98 16 31 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.53 7.92 -51.93 -0.41 0.12 16 38 H 0.06 0.58 7.92 -51.93 -0.41 0.17 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 330.83 15.07 4.99 4.99 Total: -1.00 -28.89 330.83 -8.95 -37.84 By element: Atomic # 1 Polarization: 8.80 SS G_CDS: -6.40 Total: 2.40 kcal Atomic # 6 Polarization: -13.87 SS G_CDS: -0.02 Total: -13.89 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: -0.18 Total: -47.16 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 1.94 SS G_CDS: -2.32 Total: -0.38 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.89 -8.95 -37.84 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134973730.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.338 kcal (2) G-P(sol) polarization free energy of solvation -28.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds