Wall clock time and date at job start Mon Mar 30 2020 06:47:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46910 * 2 1 4 4 C 1.50699 * 109.46585 * 240.00547 * 2 1 3 5 5 H 1.07999 * 120.00502 * 239.99501 * 4 2 1 6 6 C 1.37884 * 120.00100 * 60.00102 * 4 2 1 7 7 N 1.31515 * 119.99959 * 359.97438 * 6 4 2 8 8 Si 1.86797 * 119.99889 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47115 * 90.00404 * 8 6 4 10 10 H 1.48505 * 109.46978 * 209.99860 * 8 6 4 11 11 H 1.48496 * 109.47635 * 330.00012 * 8 6 4 12 12 N 1.46897 * 109.47295 * 120.00622 * 2 1 3 13 13 C 1.46892 * 110.99920 * 274.99974 * 12 2 1 14 14 C 1.50707 * 109.47085 * 180.02562 * 13 12 2 15 15 C 1.33635 * 126.04014 * 89.95639 * 14 13 12 16 16 N 1.31783 * 114.50226 * 179.79203 * 15 14 13 17 17 C 1.29031 * 117.12299 * 0.47059 * 16 15 14 18 18 C 1.50699 * 124.91690 * 179.81484 * 17 16 15 19 19 C 1.52997 * 109.47078 * 59.69700 * 18 17 16 20 20 C 1.52992 * 109.46956 * 299.69388 * 18 17 16 21 21 C 1.53006 * 109.46866 * 179.69522 * 18 17 16 22 22 S 1.70986 * 110.16462 * 359.55104 * 17 16 15 23 23 H 1.08998 * 109.47591 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46838 * 299.99257 * 1 2 3 25 25 H 1.08997 * 109.47470 * 59.99411 * 1 2 3 26 26 H 0.96996 * 119.99917 * 180.02562 * 7 6 4 27 27 H 1.00899 * 110.99638 * 151.04106 * 12 2 1 28 28 H 1.09002 * 109.47616 * 59.99907 * 13 12 2 29 29 H 1.09000 * 109.47232 * 299.99743 * 13 12 2 30 30 H 1.08005 * 122.74809 * 0.03692 * 15 14 13 31 31 H 1.09002 * 109.47153 * 299.99793 * 19 18 17 32 32 H 1.09001 * 109.46832 * 179.97438 * 19 18 17 33 33 H 1.09004 * 109.47261 * 59.99965 * 19 18 17 34 34 H 1.09001 * 109.47066 * 180.02562 * 20 18 17 35 35 H 1.08996 * 109.47747 * 299.99900 * 20 18 17 36 36 H 1.09002 * 109.47103 * 60.00312 * 20 18 17 37 37 H 1.08993 * 109.46955 * 300.00219 * 21 18 17 38 38 H 1.09000 * 109.47050 * 60.00048 * 21 18 17 39 39 H 1.09001 * 109.47002 * 179.97438 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2306 5 1 2.6531 -1.5884 -1.1317 6 6 1.6991 -0.2391 -2.4828 7 7 0.9426 0.8300 -2.6033 8 14 2.3222 -1.1192 -4.0081 9 1 1.3444 -2.1610 -4.4126 10 1 2.4869 -0.1397 -5.1122 11 1 3.6305 -1.7563 -3.7124 12 7 2.0197 -0.6926 1.1993 13 6 2.0825 0.2223 2.3468 14 6 2.5886 -0.5219 3.5556 15 6 3.8675 -0.6495 3.9218 16 7 4.0532 -1.3471 5.0243 17 6 3.0029 -1.8230 5.6034 18 6 3.0120 -2.6459 6.8658 19 6 3.6437 -1.8347 7.9988 20 6 3.8251 -3.9216 6.6370 21 6 1.5764 -3.0169 7.2431 22 16 1.5987 -1.3784 4.7350 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5137 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 0.7079 1.1612 -3.4843 27 1 2.9173 -1.1206 1.0285 28 1 1.0871 0.6161 2.5526 29 1 2.7589 1.0459 2.1182 30 1 4.6818 -0.2131 3.3624 31 1 4.6665 -1.5704 7.7300 32 1 3.6499 -2.4299 8.9120 33 1 3.0644 -0.9259 8.1617 34 1 3.8313 -4.5171 7.5500 35 1 3.3751 -4.4995 5.8299 36 1 4.8478 -3.6573 6.3682 37 1 0.9972 -2.1081 7.4059 38 1 1.1263 -3.5948 6.4358 39 1 1.5830 -3.6125 8.1559 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134973730.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:48 Heat of formation + Delta-G solvation = 6.094375 kcal Electronic energy + Delta-G solvation = -18004.679001 eV Core-core repulsion = 15265.566553 eV Total energy + Delta-G solvation = -2739.112448 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.86426 -38.18303 -37.33577 -34.76475 -32.18297 -29.51024 -28.29672 -28.15055 -27.48286 -26.74284 -24.52012 -21.97340 -21.76765 -19.69827 -18.83093 -18.37266 -16.92817 -16.47728 -16.02036 -15.89430 -15.40156 -15.31659 -14.97279 -14.61503 -14.42275 -13.97162 -13.76070 -13.26030 -13.10039 -12.99526 -12.80435 -12.71129 -12.59141 -12.55040 -12.27935 -12.23775 -12.03518 -12.01401 -11.91544 -11.82775 -10.94500 -10.60116 -10.49144 -10.15271 -9.75885 -9.14084 -8.15692 -6.29870 -0.22658 0.42774 0.87954 1.41484 1.42430 1.52487 1.86107 2.40234 3.09408 3.13181 3.63029 3.83433 3.97291 3.98948 4.08281 4.22312 4.40323 4.58975 4.71563 4.75511 4.76653 4.87041 4.87460 4.98468 4.98918 5.02797 5.04804 5.15241 5.17038 5.29857 5.38805 5.42253 5.43637 5.63373 5.81589 6.18975 6.38619 6.68019 6.78679 6.92584 7.40440 8.89971 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.037023 B = 0.003740 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.106125 B = 7485.270656 C = 7690.200016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.216 3.784 3 H -0.024 1.024 4 C -0.539 4.539 5 H 0.058 0.942 6 C 0.015 3.985 7 N -0.916 5.916 8 Si 0.962 3.038 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.269 1.269 12 N -0.680 5.680 13 C 0.140 3.860 14 C -0.223 4.223 15 C 0.026 3.974 16 N -0.491 5.491 17 C 0.046 3.954 18 C 0.008 3.992 19 C -0.129 4.129 20 C -0.131 4.131 21 C -0.153 4.153 22 S 0.155 5.845 23 H 0.027 0.973 24 H 0.023 0.977 25 H 0.059 0.941 26 H 0.263 0.737 27 H 0.333 0.667 28 H 0.074 0.926 29 H 0.043 0.957 30 H 0.176 0.824 31 H 0.051 0.949 32 H 0.089 0.911 33 H 0.053 0.947 34 H 0.090 0.910 35 H 0.048 0.952 36 H 0.051 0.949 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.545 -6.257 20.750 21.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.107 3.893 3 H -0.006 1.006 4 C -0.577 4.577 5 H 0.076 0.924 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.788 3.212 9 H -0.201 1.201 10 H -0.208 1.208 11 H -0.193 1.193 12 N -0.312 5.312 13 C 0.008 3.992 14 C -0.345 4.345 15 C -0.125 4.125 16 N -0.204 5.204 17 C -0.232 4.232 18 C 0.004 3.996 19 C -0.188 4.188 20 C -0.190 4.190 21 C -0.211 4.211 22 S 0.412 5.588 23 H 0.046 0.954 24 H 0.042 0.958 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.151 0.849 28 H 0.092 0.908 29 H 0.061 0.939 30 H 0.193 0.807 31 H 0.070 0.930 32 H 0.108 0.892 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.274 -6.637 21.122 22.177 hybrid contribution 1.730 0.940 -2.101 2.880 sum 3.004 -5.697 19.020 20.081 Atomic orbital electron populations 1.21554 0.97553 0.98913 0.99203 1.18948 0.92840 0.91035 0.86428 1.00646 1.21549 1.31866 1.12736 0.91574 0.92422 1.25706 0.95123 0.95629 1.01959 1.70011 1.37319 1.23940 1.24275 0.85493 0.78831 0.78225 0.78692 1.20135 1.20772 1.19310 1.60723 1.32473 1.32949 1.05034 1.20160 0.99977 0.92417 0.86616 1.25956 0.97019 1.08147 1.03357 1.21815 0.95942 1.00316 0.94434 1.66195 1.32623 1.12272 1.09345 1.27702 0.91129 1.02185 1.02168 1.19430 0.98522 0.93867 0.87782 1.21810 1.00339 0.99685 0.96919 1.21823 0.99255 0.95015 1.02874 1.22047 0.92838 1.02706 1.03489 1.83793 1.12046 1.46188 1.16748 0.95387 0.95830 0.92229 0.92736 0.84924 0.90803 0.93939 0.80657 0.92992 0.89186 0.92794 0.89103 0.93259 0.93015 0.91776 0.92227 0.88327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.69 9.19 71.98 0.66 -5.03 16 2 C 0.22 11.01 2.60 44.17 0.11 11.13 16 3 H -0.02 -1.33 7.80 -2.39 -0.02 -1.35 16 4 C -0.54 -29.71 8.59 25.60 0.22 -29.49 16 5 H 0.06 3.13 7.62 -2.91 -0.02 3.11 16 6 C 0.02 0.85 5.30 84.66 0.45 1.29 16 7 N -0.92 -52.58 11.32 21.45 0.24 -52.34 16 8 Si 0.96 43.51 29.54 68.60 2.03 45.53 16 9 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.27 -11.80 7.11 99.48 0.71 -11.10 16 12 N -0.68 -29.27 6.29 -499.48 -3.14 -32.41 16 13 C 0.14 5.07 6.02 85.56 0.51 5.59 16 14 C -0.22 -7.14 6.11 24.64 0.15 -6.99 16 15 C 0.03 0.82 11.25 83.66 0.94 1.76 16 16 N -0.49 -14.62 10.53 -191.44 -2.02 -16.63 16 17 C 0.05 1.18 5.78 88.52 0.51 1.69 16 18 C 0.01 0.14 0.99 -52.93 -0.05 0.09 16 19 C -0.13 -2.04 8.45 71.98 0.61 -1.43 16 20 C -0.13 -2.25 8.45 71.98 0.61 -1.64 16 21 C -0.15 -2.17 7.54 71.98 0.54 -1.62 16 22 S 0.16 4.21 21.57 -56.49 -1.22 2.99 16 23 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.02 1.03 7.45 -2.39 -0.02 1.02 16 25 H 0.06 3.25 6.07 -2.39 -0.01 3.24 16 26 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 27 H 0.33 14.28 8.22 -89.69 -0.74 13.55 16 28 H 0.07 2.69 7.44 -2.39 -0.02 2.67 16 29 H 0.04 1.54 8.06 -2.39 -0.02 1.52 16 30 H 0.18 4.98 8.06 -2.91 -0.02 4.96 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.06 0.91 7.92 -2.39 -0.02 0.89 16 38 H 0.06 0.92 7.92 -2.39 -0.02 0.90 16 39 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -61.38 330.83 1.45 -59.93 By element: Atomic # 1 Polarization: 17.29 SS G_CDS: 0.29 Total: 17.58 kcal Atomic # 6 Polarization: -29.93 SS G_CDS: 5.27 Total: -24.66 kcal Atomic # 7 Polarization: -96.46 SS G_CDS: -4.91 Total: -101.38 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: 4.21 SS G_CDS: -1.22 Total: 2.99 kcal Total: -61.38 1.45 -59.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134973730.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.020 kcal (2) G-P(sol) polarization free energy of solvation -61.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds