Wall clock time and date at job start Mon Mar 30 2020 06:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47363 * 2 1 4 4 N 1.46902 * 109.46934 * 119.99751 * 2 1 3 5 5 C 1.46906 * 110.99639 * 150.25710 * 4 2 1 6 6 C 1.52993 * 109.47316 * 286.78901 * 5 4 2 7 7 C 1.50702 * 109.47244 * 185.36315 * 6 5 4 8 8 H 1.08004 * 119.99739 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00435 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00136 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99753 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.47110 * 90.00258 * 11 9 7 13 13 H 1.48504 * 109.47182 * 210.00114 * 11 9 7 14 14 H 1.48498 * 109.47289 * 330.00508 * 11 9 7 15 15 C 1.46894 * 111.00127 * 274.21207 * 4 2 1 16 16 C 1.53001 * 109.46707 * 76.91709 * 15 4 2 17 17 C 1.50703 * 109.46927 * 173.42505 * 16 15 4 18 18 N 1.29031 * 124.91495 * 90.30493 * 17 16 15 19 19 C 1.31789 * 117.11868 * 180.22665 * 18 17 16 20 20 C 1.33635 * 114.50281 * 359.48434 * 19 18 17 21 21 S 1.70974 * 124.91771 * 269.99565 * 17 16 15 22 22 H 1.09001 * 109.47387 * 314.12828 * 1 2 3 23 23 H 1.09005 * 109.46851 * 74.12424 * 1 2 3 24 24 H 1.09000 * 109.47326 * 194.12751 * 1 2 3 25 25 H 1.08996 * 109.47191 * 239.99740 * 2 1 3 26 26 H 1.08998 * 109.47391 * 168.78052 * 3 2 1 27 27 H 1.08998 * 109.47093 * 288.78588 * 3 2 1 28 28 H 1.09003 * 109.47170 * 48.78238 * 3 2 1 29 29 H 1.09002 * 109.46792 * 46.79198 * 5 4 2 30 30 H 1.09003 * 109.46470 * 166.78664 * 5 4 2 31 31 H 1.09000 * 109.47644 * 305.36559 * 6 5 4 32 32 H 1.09001 * 109.47237 * 65.36649 * 6 5 4 33 33 H 0.96998 * 119.99467 * 179.97438 * 10 9 7 34 34 H 1.08992 * 109.47545 * 316.91347 * 15 4 2 35 35 H 1.09001 * 109.47026 * 196.90966 * 15 4 2 36 36 H 1.08992 * 109.47548 * 53.42448 * 16 15 4 37 37 H 1.09001 * 109.47449 * 293.42091 * 16 15 4 38 38 H 1.07996 * 122.74199 * 179.74897 * 19 18 17 39 39 H 1.08004 * 126.03606 * 180.27466 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 3.3178 -1.3314 0.9454 6 6 3.1152 -2.5650 0.0634 7 6 4.4251 -3.2943 -0.0889 8 1 5.3133 -2.9160 0.3953 9 6 4.4898 -4.4445 -0.8465 10 7 5.6329 -5.0812 -0.9789 11 14 2.9535 -5.0992 -1.6834 12 1 2.8394 -4.5083 -3.0410 13 1 3.0413 -6.5776 -1.7929 14 1 1.7585 -4.7323 -0.8819 15 6 2.1001 0.2271 2.3422 16 6 0.6972 0.4667 2.9037 17 6 0.7948 1.2778 4.1701 18 7 0.7630 2.5665 4.2260 19 6 0.8656 3.1188 5.4181 20 6 0.9800 2.2473 6.4247 21 16 0.9560 0.6235 5.7414 22 1 -0.3634 0.7155 0.7376 23 1 -0.3633 0.2811 -0.9885 24 1 -0.3634 -0.9966 0.2508 25 1 1.8933 -0.5139 -0.8899 26 1 3.1115 1.4490 0.1999 27 1 1.8492 1.8953 -0.9729 28 1 1.5228 2.0108 0.7730 29 1 3.9766 -0.6264 0.4383 30 1 3.7665 -1.6315 1.8924 31 1 2.3828 -3.2264 0.5263 32 1 2.7557 -2.2550 -0.9179 33 1 5.6782 -5.8906 -1.5116 34 1 2.5279 1.1751 2.0163 35 1 2.7315 -0.2096 3.1161 36 1 0.2243 -0.4909 3.1211 37 1 0.0999 1.0086 2.1703 38 1 0.8537 4.1881 5.5695 39 1 1.0708 2.4947 7.4721 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000159920059.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:00 Heat of formation + Delta-G solvation = 46.662504 kcal Electronic energy + Delta-G solvation = -18356.121546 eV Core-core repulsion = 15618.768264 eV Total energy + Delta-G solvation = -2737.353282 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.84416 -38.56736 -33.62879 -32.85995 -31.71152 -29.89917 -28.38658 -27.09366 -25.25644 -23.77456 -22.49790 -20.68761 -19.97611 -19.04227 -18.02853 -16.90052 -16.02880 -15.68668 -15.07946 -14.66026 -14.21630 -14.05852 -13.78239 -13.66739 -12.84165 -12.82590 -12.63265 -12.49419 -12.22924 -12.11950 -11.62700 -11.50170 -11.28836 -11.05849 -10.83050 -10.63555 -10.31885 -9.95196 -9.87235 -9.76769 -9.64363 -9.50643 -9.17763 -8.99901 -8.50611 -7.82178 -6.02348 -4.00305 0.57197 1.24156 1.64213 2.69618 3.33749 3.41325 3.47552 3.94156 4.39560 4.48437 4.96299 5.02537 5.03569 5.23664 5.26208 5.31672 5.32806 5.38734 5.57322 5.65522 5.78623 5.83206 5.88600 6.02313 6.05250 6.11749 6.13102 6.21766 6.35842 6.51122 6.59599 6.80066 7.18090 7.33972 7.60563 7.64183 7.68270 7.87102 8.55171 9.01942 9.60430 11.11076 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.026333 B = 0.004189 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.041116 B = 6682.285635 C = 7156.414059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.069 3.931 3 C -0.179 4.179 4 N -0.535 5.535 5 C 0.071 3.929 6 C -0.005 4.005 7 C -0.521 4.521 8 H 0.070 0.930 9 C 0.068 3.932 10 N -0.905 5.905 11 Si 0.879 3.121 12 H -0.278 1.278 13 H -0.289 1.289 14 H -0.262 1.262 15 C 0.052 3.948 16 C -0.049 4.049 17 C 0.064 3.936 18 N -0.480 5.480 19 C 0.039 3.961 20 C -0.271 4.271 21 S 0.123 5.877 22 H 0.055 0.945 23 H 0.051 0.949 24 H 0.065 0.935 25 H 0.086 0.914 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.061 0.939 29 H 0.027 0.973 30 H 0.066 0.934 31 H 0.026 0.974 32 H 0.009 0.991 33 H 0.263 0.737 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.173 0.827 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.087 14.832 11.435 22.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.039 4.039 3 C -0.237 4.237 4 N -0.258 5.258 5 C -0.056 4.056 6 C -0.042 4.042 7 C -0.559 4.559 8 H 0.088 0.912 9 C -0.133 4.133 10 N -0.544 5.544 11 Si 0.707 3.293 12 H -0.204 1.204 13 H -0.215 1.215 14 H -0.186 1.186 15 C -0.077 4.077 16 C -0.090 4.090 17 C -0.214 4.214 18 N -0.195 5.195 19 C -0.113 4.113 20 C -0.411 4.411 21 S 0.377 5.623 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.084 0.916 25 H 0.104 0.896 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.080 0.920 29 H 0.046 0.954 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.028 0.972 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.088 0.912 36 H 0.113 0.887 37 H 0.120 0.880 38 H 0.190 0.810 39 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -12.335 13.586 11.397 21.602 hybrid contribution -0.007 1.221 -0.404 1.286 sum -12.343 14.807 10.993 22.191 Atomic orbital electron populations 1.22058 0.95025 1.02379 1.00805 1.21771 0.95520 0.92460 0.94186 1.22433 1.01282 0.98159 1.01821 1.62257 1.29780 1.29960 1.03846 1.22172 0.86770 0.96254 1.00358 1.19547 0.97705 0.92880 0.94099 1.21096 0.94770 1.08766 1.31300 0.91201 1.24990 0.95885 0.96444 0.96029 1.69919 1.25047 1.18611 1.40813 0.86775 0.84497 0.77872 0.80189 1.20421 1.21490 1.18646 1.22187 0.94616 0.96735 0.94206 1.20649 0.99913 0.98347 0.90132 1.27310 1.01530 0.92790 0.99780 1.66326 1.16883 1.09457 1.26785 1.21808 1.01738 1.01571 0.86151 1.27072 1.13813 0.95186 1.04990 1.84213 1.66915 1.09146 1.01991 0.92645 0.92997 0.91610 0.89628 0.92672 0.92568 0.92046 0.95442 0.91531 0.95599 0.97236 0.92771 0.92890 0.91247 0.88735 0.88044 0.81004 0.80810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.80 37.16 0.33 -1.53 16 2 C 0.07 1.04 2.68 -67.71 -0.18 0.85 16 3 C -0.18 -2.37 7.76 37.16 0.29 -2.09 16 4 N -0.53 -8.77 4.28 -226.65 -0.97 -9.74 16 5 C 0.07 1.41 4.81 -3.82 -0.02 1.39 16 6 C 0.00 -0.11 4.05 -27.89 -0.11 -0.22 16 7 C -0.52 -14.83 9.66 -34.44 -0.33 -15.17 16 8 H 0.07 2.13 7.99 -52.48 -0.42 1.71 16 9 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 10 N -0.90 -28.01 13.96 55.43 0.77 -27.24 16 11 Si 0.88 21.85 27.47 -169.99 -4.67 17.18 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 14 H -0.26 -6.29 6.54 56.52 0.37 -5.92 16 15 C 0.05 0.74 4.48 -3.83 -0.02 0.72 16 16 C -0.05 -0.60 5.19 -27.88 -0.14 -0.75 16 17 C 0.06 0.78 6.64 -13.45 -0.09 0.69 16 18 N -0.48 -6.11 10.54 -11.86 -0.13 -6.23 16 19 C 0.04 0.40 11.35 -19.18 -0.22 0.18 16 20 C -0.27 -2.47 11.37 29.12 0.33 -2.14 16 21 S 0.12 1.28 23.18 -107.50 -2.49 -1.22 16 22 H 0.05 0.64 5.01 -51.93 -0.26 0.38 16 23 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 24 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.09 1.45 6.34 -51.93 -0.33 1.12 16 26 H 0.05 0.78 7.11 -51.93 -0.37 0.41 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.78 6.17 -51.93 -0.32 0.46 16 29 H 0.03 0.55 7.51 -51.93 -0.39 0.16 16 30 H 0.07 1.34 7.64 -51.93 -0.40 0.94 16 31 H 0.03 0.63 7.20 -51.93 -0.37 0.26 16 32 H 0.01 0.22 6.23 -51.93 -0.32 -0.10 16 33 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 34 H 0.05 0.75 5.14 -51.93 -0.27 0.49 16 35 H 0.07 0.99 7.60 -51.93 -0.39 0.60 16 36 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.10 1.22 4.58 -51.93 -0.24 0.98 16 38 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 39 H 0.17 1.08 8.06 -52.48 -0.42 0.66 16 LS Contribution 317.96 15.07 4.79 4.79 Total: -1.00 -31.09 317.96 -8.74 -39.83 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -5.79 Total: -1.21 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: -0.27 Total: -16.17 kcal Atomic # 7 Polarization: -42.89 SS G_CDS: -0.32 Total: -43.21 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.67 Total: 17.18 kcal Atomic # 16 Polarization: 1.28 SS G_CDS: -2.49 Total: -1.22 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.09 -8.74 -39.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159920059.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.494 kcal (2) G-P(sol) polarization free energy of solvation -31.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds