Wall clock time and date at job start Mon Mar 30 2020 06:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47363 * 2 1 4 4 N 1.46902 * 109.46934 * 119.99751 * 2 1 3 5 5 C 1.46906 * 110.99639 * 150.25710 * 4 2 1 6 6 C 1.52993 * 109.47316 * 286.78901 * 5 4 2 7 7 C 1.50702 * 109.47244 * 185.36315 * 6 5 4 8 8 H 1.08004 * 119.99739 * 0.02562 * 7 6 5 9 9 C 1.37874 * 120.00435 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00136 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99753 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.47110 * 90.00258 * 11 9 7 13 13 H 1.48504 * 109.47182 * 210.00114 * 11 9 7 14 14 H 1.48498 * 109.47289 * 330.00508 * 11 9 7 15 15 C 1.46894 * 111.00127 * 274.21207 * 4 2 1 16 16 C 1.53001 * 109.46707 * 76.91709 * 15 4 2 17 17 C 1.50703 * 109.46927 * 173.42505 * 16 15 4 18 18 N 1.29031 * 124.91495 * 90.30493 * 17 16 15 19 19 C 1.31789 * 117.11868 * 180.22665 * 18 17 16 20 20 C 1.33635 * 114.50281 * 359.48434 * 19 18 17 21 21 S 1.70974 * 124.91771 * 269.99565 * 17 16 15 22 22 H 1.09001 * 109.47387 * 314.12828 * 1 2 3 23 23 H 1.09005 * 109.46851 * 74.12424 * 1 2 3 24 24 H 1.09000 * 109.47326 * 194.12751 * 1 2 3 25 25 H 1.08996 * 109.47191 * 239.99740 * 2 1 3 26 26 H 1.08998 * 109.47391 * 168.78052 * 3 2 1 27 27 H 1.08998 * 109.47093 * 288.78588 * 3 2 1 28 28 H 1.09003 * 109.47170 * 48.78238 * 3 2 1 29 29 H 1.09002 * 109.46792 * 46.79198 * 5 4 2 30 30 H 1.09003 * 109.46470 * 166.78664 * 5 4 2 31 31 H 1.09000 * 109.47644 * 305.36559 * 6 5 4 32 32 H 1.09001 * 109.47237 * 65.36649 * 6 5 4 33 33 H 0.96998 * 119.99467 * 179.97438 * 10 9 7 34 34 H 1.08992 * 109.47545 * 316.91347 * 15 4 2 35 35 H 1.09001 * 109.47026 * 196.90966 * 15 4 2 36 36 H 1.08992 * 109.47548 * 53.42448 * 16 15 4 37 37 H 1.09001 * 109.47449 * 293.42091 * 16 15 4 38 38 H 1.07996 * 122.74199 * 179.74897 * 19 18 17 39 39 H 1.08004 * 126.03606 * 180.27466 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 3.3178 -1.3314 0.9454 6 6 3.1152 -2.5650 0.0634 7 6 4.4251 -3.2943 -0.0889 8 1 5.3133 -2.9160 0.3953 9 6 4.4898 -4.4445 -0.8465 10 7 5.6329 -5.0812 -0.9789 11 14 2.9535 -5.0992 -1.6834 12 1 2.8394 -4.5083 -3.0410 13 1 3.0413 -6.5776 -1.7929 14 1 1.7585 -4.7323 -0.8819 15 6 2.1001 0.2271 2.3422 16 6 0.6972 0.4667 2.9037 17 6 0.7948 1.2778 4.1701 18 7 0.7630 2.5665 4.2260 19 6 0.8656 3.1188 5.4181 20 6 0.9800 2.2473 6.4247 21 16 0.9560 0.6235 5.7414 22 1 -0.3634 0.7155 0.7376 23 1 -0.3633 0.2811 -0.9885 24 1 -0.3634 -0.9966 0.2508 25 1 1.8933 -0.5139 -0.8899 26 1 3.1115 1.4490 0.1999 27 1 1.8492 1.8953 -0.9729 28 1 1.5228 2.0108 0.7730 29 1 3.9766 -0.6264 0.4383 30 1 3.7665 -1.6315 1.8924 31 1 2.3828 -3.2264 0.5263 32 1 2.7557 -2.2550 -0.9179 33 1 5.6782 -5.8906 -1.5116 34 1 2.5279 1.1751 2.0163 35 1 2.7315 -0.2096 3.1161 36 1 0.2243 -0.4909 3.1211 37 1 0.0999 1.0086 2.1703 38 1 0.8537 4.1881 5.5695 39 1 1.0708 2.4947 7.4721 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000159920059.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:41:00 Heat of formation + Delta-G solvation = 26.634190 kcal Electronic energy + Delta-G solvation = -18356.990039 eV Core-core repulsion = 15618.768264 eV Total energy + Delta-G solvation = -2738.221774 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.71678 -39.77822 -35.49050 -34.02428 -33.37839 -31.23365 -29.59064 -28.17773 -26.56102 -25.24169 -23.54092 -22.40426 -20.82328 -20.32763 -19.04753 -18.82694 -17.25624 -16.66679 -16.39191 -16.03392 -15.67783 -15.20923 -15.02958 -14.75726 -14.53130 -14.23769 -13.89638 -13.57806 -13.49300 -13.21520 -13.13364 -12.90581 -12.38600 -12.33076 -12.20083 -11.95157 -11.77185 -11.68256 -11.48990 -11.41794 -11.26111 -10.73341 -10.55993 -10.33390 -9.81458 -9.15727 -8.28230 -6.32160 -0.22903 0.45654 0.86025 1.37545 1.39974 1.53374 1.88847 2.38412 2.87620 3.07754 3.37705 3.91317 4.03599 4.19485 4.20289 4.27392 4.41920 4.42415 4.49008 4.57248 4.59134 4.64230 4.75137 4.82442 4.92256 4.98837 5.01181 5.05387 5.13330 5.28337 5.33390 5.40263 5.49988 5.57243 5.67024 6.19127 6.27664 6.35161 6.75640 6.80390 7.32716 8.88561 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.026333 B = 0.004189 C = 0.003912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.041116 B = 6682.285635 C = 7156.414059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.064 3.936 3 C -0.170 4.170 4 N -0.536 5.536 5 C 0.083 3.917 6 C 0.004 3.996 7 C -0.532 4.532 8 H 0.031 0.969 9 C 0.007 3.993 10 N -0.952 5.952 11 Si 0.950 3.050 12 H -0.267 1.267 13 H -0.284 1.284 14 H -0.246 1.246 15 C 0.057 3.943 16 C -0.039 4.039 17 C 0.041 3.959 18 N -0.500 5.500 19 C 0.019 3.981 20 C -0.255 4.255 21 S 0.128 5.872 22 H 0.069 0.931 23 H 0.067 0.933 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.040 0.960 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.019 0.981 30 H 0.058 0.942 31 H 0.023 0.977 32 H 0.015 0.985 33 H 0.266 0.734 34 H 0.052 0.948 35 H 0.062 0.938 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.196 0.804 39 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.497 15.987 12.022 24.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.045 4.045 3 C -0.229 4.229 4 N -0.260 5.260 5 C -0.044 4.044 6 C -0.033 4.033 7 C -0.571 4.571 8 H 0.049 0.951 9 C -0.190 4.190 10 N -0.593 5.593 11 Si 0.774 3.226 12 H -0.192 1.192 13 H -0.210 1.210 14 H -0.169 1.169 15 C -0.072 4.072 16 C -0.080 4.080 17 C -0.236 4.236 18 N -0.216 5.216 19 C -0.131 4.131 20 C -0.394 4.394 21 S 0.381 5.619 22 H 0.088 0.912 23 H 0.085 0.915 24 H 0.076 0.924 25 H 0.082 0.918 26 H 0.059 0.941 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.037 0.963 30 H 0.076 0.924 31 H 0.042 0.958 32 H 0.033 0.967 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.115 0.885 37 H 0.123 0.877 38 H 0.213 0.787 39 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -14.758 14.768 11.994 24.077 hybrid contribution 0.832 0.931 -0.481 1.338 sum -13.926 15.699 11.513 23.936 Atomic orbital electron populations 1.21998 0.92904 1.02433 1.02240 1.21865 0.97145 0.92913 0.92531 1.22345 1.00305 0.97237 1.02968 1.62211 1.27243 1.31276 1.05251 1.21833 0.88568 0.95015 0.98996 1.19397 0.94902 0.93896 0.95141 1.21437 0.95585 1.09331 1.30719 0.95091 1.25963 0.99454 0.96738 0.96832 1.70069 1.27672 1.19406 1.42105 0.85653 0.80359 0.77224 0.79405 1.19211 1.20997 1.16921 1.22164 0.96125 0.95904 0.93051 1.20464 0.98289 0.98669 0.90531 1.27196 1.03139 0.92936 1.00356 1.66316 1.17103 1.09836 1.28338 1.22221 1.02275 1.02939 0.85694 1.27466 1.11680 0.93992 1.06295 1.84196 1.66460 1.10077 1.01136 0.91217 0.91454 0.92376 0.91776 0.94115 0.91127 0.91156 0.96252 0.92354 0.95815 0.96665 0.92497 0.92964 0.91908 0.88478 0.87729 0.78704 0.77778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.21 8.80 71.98 0.63 -2.58 16 2 C 0.06 1.83 2.68 44.92 0.12 1.95 16 3 C -0.17 -4.29 7.76 71.98 0.56 -3.73 16 4 N -0.54 -17.25 4.28 -871.00 -3.73 -20.98 16 5 C 0.08 3.36 4.81 86.30 0.42 3.78 16 6 C 0.00 0.21 4.05 29.85 0.12 0.33 16 7 C -0.53 -31.15 9.66 25.60 0.25 -30.91 16 8 H 0.03 1.99 7.99 -2.91 -0.02 1.96 16 9 C 0.01 0.41 5.47 84.65 0.46 0.87 16 10 N -0.95 -60.35 13.96 21.45 0.30 -60.05 16 11 Si 0.95 44.91 27.47 68.60 1.88 46.79 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 13 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 14 H -0.25 -10.89 6.54 99.48 0.65 -10.24 16 15 C 0.06 1.56 4.48 86.30 0.39 1.95 16 16 C -0.04 -0.89 5.19 29.85 0.15 -0.74 16 17 C 0.04 0.94 6.64 88.52 0.59 1.53 16 18 N -0.50 -11.89 10.54 -191.44 -2.02 -13.91 16 19 C 0.02 0.34 11.35 83.65 0.95 1.29 16 20 C -0.26 -3.95 11.37 66.77 0.76 -3.19 16 21 S 0.13 2.43 23.18 -56.49 -1.31 1.12 16 22 H 0.07 1.42 5.01 -2.39 -0.01 1.41 16 23 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 24 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.06 2.12 6.34 -2.39 -0.02 2.10 16 26 H 0.04 1.13 7.11 -2.39 -0.02 1.11 16 27 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.07 1.65 6.17 -2.39 -0.01 1.63 16 29 H 0.02 0.79 7.51 -2.39 -0.02 0.78 16 30 H 0.06 2.41 7.64 -2.39 -0.02 2.39 16 31 H 0.02 1.14 7.20 -2.39 -0.02 1.12 16 32 H 0.02 0.71 6.23 -2.39 -0.01 0.69 16 33 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 34 H 0.05 1.45 5.14 -2.39 -0.01 1.43 16 35 H 0.06 1.79 7.60 -2.39 -0.02 1.77 16 36 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.10 2.30 4.58 -2.39 -0.01 2.29 16 38 H 0.20 2.43 8.06 -2.91 -0.02 2.41 16 39 H 0.21 1.77 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -67.76 317.96 1.50 -66.26 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: 0.98 Total: 10.21 kcal Atomic # 6 Polarization: -34.84 SS G_CDS: 5.40 Total: -29.44 kcal Atomic # 7 Polarization: -89.49 SS G_CDS: -5.45 Total: -94.94 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 1.88 Total: 46.79 kcal Atomic # 16 Polarization: 2.43 SS G_CDS: -1.31 Total: 1.12 kcal Total: -67.76 1.50 -66.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000159920059.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.894 kcal (2) G-P(sol) polarization free energy of solvation -67.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds