Wall clock time and date at job start Mon Mar 30 2020 06:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46897 * 110.99671 * 2 1 4 4 C 1.50703 * 109.47167 * 66.04818 * 3 2 1 5 5 H 1.07995 * 120.00317 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99789 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00191 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99831 * 179.97438 * 6 4 3 9 9 H 1.48508 * 109.46971 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47133 * 119.99597 * 8 6 4 11 11 H 1.48491 * 109.47233 * 239.99991 * 8 6 4 12 12 C 1.46895 * 111.00016 * 236.04666 * 2 1 3 13 13 C 1.50702 * 109.47021 * 293.95532 * 12 2 1 14 14 C 1.33636 * 122.75111 * 95.02555 * 13 12 2 15 15 S 1.76195 * 107.92420 * 179.75695 * 14 13 12 16 16 C 1.70982 * 90.28425 * 0.28306 * 15 14 13 17 17 C 1.50699 * 124.91863 * 179.97438 * 16 15 14 18 18 C 1.52997 * 109.47078 * 239.69654 * 17 16 15 19 19 C 1.52992 * 109.46956 * 119.69342 * 17 16 15 20 20 C 1.53006 * 109.46866 * 359.69477 * 17 16 15 21 21 N 1.29028 * 110.16088 * 359.71148 * 16 15 14 22 22 H 1.08997 * 109.47219 * 183.95160 * 1 2 3 23 23 H 1.09002 * 109.47088 * 303.95515 * 1 2 3 24 24 H 1.09007 * 109.47073 * 63.95166 * 1 2 3 25 25 H 1.09001 * 109.47188 * 186.04130 * 3 2 1 26 26 H 1.09001 * 109.47471 * 306.04275 * 3 2 1 27 27 H 0.96999 * 119.99702 * 180.02562 * 7 6 4 28 28 H 1.08998 * 109.46950 * 173.95766 * 12 2 1 29 29 H 1.09006 * 109.47141 * 53.95641 * 12 2 1 30 30 H 1.08000 * 126.03728 * 359.97438 * 14 13 12 31 31 H 1.09002 * 109.47153 * 299.99793 * 18 17 16 32 32 H 1.09001 * 109.46832 * 179.97438 * 18 17 16 33 33 H 1.09004 * 109.47261 * 59.99965 * 18 17 16 34 34 H 1.09001 * 109.47066 * 180.02562 * 19 17 16 35 35 H 1.08996 * 109.47747 * 299.99900 * 19 17 16 36 36 H 1.09002 * 109.47103 * 60.00312 * 19 17 16 37 37 H 1.08993 * 109.46955 * 300.00219 * 20 17 16 38 38 H 1.09000 * 109.47050 * 60.00048 * 20 17 16 39 39 H 1.09001 * 109.47002 * 179.97438 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0739 1.5115 2.0485 6 6 2.0276 3.3492 1.5289 7 7 2.7135 4.0013 0.6158 8 14 1.5826 4.1870 3.1381 9 1 0.8145 3.2445 3.9910 10 1 2.8240 4.5934 3.8444 11 1 0.7560 5.3885 2.8586 12 6 1.9954 -0.7659 -1.1376 13 6 1.6369 -2.2204 -0.9728 14 6 0.5554 -2.7667 -1.5365 15 16 0.5188 -4.4729 -1.0983 16 6 1.9569 -4.2801 -0.1938 17 6 2.6513 -5.3801 0.5671 18 6 2.7259 -5.0066 2.0490 19 6 4.0664 -5.5664 0.0163 20 6 1.8665 -6.6839 0.4086 21 7 2.3644 -3.0578 -0.2615 22 1 -0.3633 -1.0252 0.0708 23 1 -0.3633 0.5740 0.8524 24 1 -0.3633 0.4513 -0.9233 25 1 3.0797 1.3445 -0.1082 26 1 1.5611 1.9274 -0.8309 27 1 2.9887 4.9172 0.7781 28 1 3.0797 -0.6611 -1.1755 29 1 1.5611 -0.3871 -2.0628 30 1 -0.1666 -2.2538 -2.1547 31 1 3.2850 -4.0778 2.1619 32 1 3.2278 -5.8024 2.5994 33 1 1.7177 -4.8739 2.4414 34 1 4.5686 -6.3623 0.5663 35 1 4.0134 -5.8325 -1.0394 36 1 4.6255 -4.6375 0.1292 37 1 0.8584 -6.5511 0.8010 38 1 1.8134 -6.9499 -0.6471 39 1 2.3690 -7.4796 0.9586 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177187955.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:32 Heat of formation + Delta-G solvation = 34.145340 kcal Electronic energy + Delta-G solvation = -18345.700368 eV Core-core repulsion = 15607.804301 eV Total energy + Delta-G solvation = -2737.896067 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.92748 -37.19076 -35.88250 -32.54935 -30.18406 -27.57118 -27.32427 -27.31805 -26.96484 -24.84360 -23.56148 -20.71667 -19.66088 -19.17607 -17.23832 -16.29680 -15.61003 -15.19468 -14.68133 -14.25327 -14.20345 -14.00179 -13.89750 -13.27354 -13.23369 -12.48333 -12.39721 -12.25711 -11.91527 -11.78223 -11.77799 -11.45418 -11.18783 -11.12946 -11.05810 -10.89897 -10.83306 -10.58667 -10.43796 -9.85077 -9.33578 -9.20057 -9.15003 -8.54353 -8.40487 -7.22323 -6.00664 -4.01468 0.91808 1.53915 1.91869 3.06787 3.32739 3.39974 3.45503 4.03358 4.45590 4.66177 4.77572 4.91938 5.15587 5.26300 5.35311 5.38741 5.39971 5.49072 5.63146 5.64811 5.71482 5.81632 5.83595 5.92244 5.99056 6.11889 6.18782 6.22807 6.28105 6.36404 6.46671 6.75298 7.29399 7.33646 7.81760 8.04740 8.12017 8.21271 8.55729 9.06136 9.62436 11.10371 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.026874 B = 0.004298 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.661948 B = 6512.356592 C = 6925.712426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.531 5.531 3 C 0.194 3.806 4 C -0.504 4.504 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.124 3.876 13 C 0.100 3.900 14 C -0.264 4.264 15 S 0.086 5.914 16 C 0.062 3.938 17 C 0.012 3.988 18 C -0.135 4.135 19 C -0.134 4.134 20 C -0.152 4.152 21 N -0.447 5.447 22 H 0.043 0.957 23 H 0.075 0.925 24 H 0.010 0.990 25 H 0.032 0.968 26 H -0.008 1.008 27 H 0.260 0.740 28 H 0.085 0.915 29 H 0.040 0.960 30 H 0.171 0.829 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.061 0.939 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.519 -20.859 -3.513 21.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.255 5.255 3 C 0.069 3.931 4 C -0.543 4.543 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.211 1.211 12 C -0.007 4.007 13 C -0.032 4.032 14 C -0.404 4.404 15 S 0.341 5.659 16 C -0.218 4.218 17 C 0.008 3.992 18 C -0.193 4.193 19 C -0.192 4.192 20 C -0.210 4.210 21 N -0.160 5.160 22 H 0.062 0.938 23 H 0.093 0.907 24 H 0.029 0.971 25 H 0.050 0.950 26 H 0.010 0.990 27 H 0.070 0.930 28 H 0.104 0.896 29 H 0.058 0.942 30 H 0.189 0.811 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.483 -21.568 -3.077 21.927 hybrid contribution -0.396 1.984 -0.105 2.026 sum -2.879 -19.583 -3.183 20.048 Atomic orbital electron populations 1.22255 0.88977 0.99508 1.00492 1.62050 1.06867 1.17635 1.38987 1.19761 0.95535 0.81046 0.96769 1.21185 1.34637 0.96832 1.01637 0.91833 1.24981 0.95319 0.97326 0.96988 1.69969 1.38468 1.11421 1.34043 0.86445 0.78167 0.79265 0.83579 1.19674 1.20982 1.21128 1.20602 1.01178 0.85708 0.93237 1.20344 0.91151 0.97368 0.94343 1.26831 1.05154 0.96633 1.11746 1.83675 1.26712 1.08950 1.46550 1.27074 0.96853 0.95879 1.01962 1.19194 0.95110 0.89875 0.94995 1.21841 1.02537 1.02524 0.92437 1.21833 0.94078 1.02755 1.00571 1.22008 1.00317 0.96160 1.02482 1.65960 1.31828 1.00725 1.17446 0.93806 0.90655 0.97104 0.95014 0.99027 0.92998 0.89629 0.94227 0.81147 0.90983 0.91920 0.92527 0.91843 0.92706 0.91195 0.91898 0.92005 0.90930 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 9.07 60.07 0.54 1.29 16 2 N -0.53 -12.09 4.74 -245.82 -1.17 -13.25 16 3 C 0.19 5.18 4.72 -4.98 -0.02 5.16 16 4 C -0.50 -14.50 8.46 -34.44 -0.29 -14.79 16 5 H 0.06 1.83 7.12 -52.49 -0.37 1.45 16 6 C 0.05 1.58 5.46 -17.82 -0.10 1.49 16 7 N -0.90 -27.05 13.29 55.43 0.74 -26.31 16 8 Si 0.90 22.00 29.54 -169.99 -5.02 16.98 16 9 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 12 C 0.12 2.40 5.41 -4.98 -0.03 2.37 16 13 C 0.10 1.74 5.57 -84.23 -0.47 1.27 16 14 C -0.26 -3.87 9.89 29.12 0.29 -3.58 16 15 S 0.09 1.06 21.57 -107.50 -2.32 -1.26 16 16 C 0.06 0.86 5.78 -13.46 -0.08 0.79 16 17 C 0.01 0.13 0.99 -155.66 -0.15 -0.02 16 18 C -0.13 -1.51 8.45 37.16 0.31 -1.19 16 19 C -0.13 -1.36 8.45 37.15 0.31 -1.04 16 20 C -0.15 -1.26 7.54 37.16 0.28 -0.98 16 21 N -0.45 -7.74 10.51 -8.06 -0.08 -7.82 16 22 H 0.04 0.81 6.47 -51.93 -0.34 0.47 16 23 H 0.07 1.65 6.76 -51.93 -0.35 1.30 16 24 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 25 H 0.03 0.90 7.93 -51.93 -0.41 0.49 16 26 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.09 1.71 7.93 -51.93 -0.41 1.30 16 29 H 0.04 0.72 8.08 -51.93 -0.42 0.30 16 30 H 0.17 2.19 8.06 -52.49 -0.42 1.76 16 31 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.52 7.93 -51.93 -0.41 0.11 16 38 H 0.06 0.49 7.92 -51.93 -0.41 0.08 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 330.51 15.07 4.98 4.98 Total: -1.00 -31.34 330.51 -8.76 -40.10 By element: Atomic # 1 Polarization: 2.34 SS G_CDS: -6.49 Total: -4.14 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: 0.60 Total: -9.25 kcal Atomic # 7 Polarization: -46.88 SS G_CDS: -0.51 Total: -47.39 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.32 Total: -1.26 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.34 -8.76 -40.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177187955.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.244 kcal (2) G-P(sol) polarization free energy of solvation -31.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds