Wall clock time and date at job start Mon Mar 30 2020 06:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46897 * 110.99671 * 2 1 4 4 C 1.50703 * 109.47167 * 66.04818 * 3 2 1 5 5 H 1.07995 * 120.00317 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99789 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00191 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99831 * 179.97438 * 6 4 3 9 9 H 1.48508 * 109.46971 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.47133 * 119.99597 * 8 6 4 11 11 H 1.48491 * 109.47233 * 239.99991 * 8 6 4 12 12 C 1.46895 * 111.00016 * 236.04666 * 2 1 3 13 13 C 1.50702 * 109.47021 * 293.95532 * 12 2 1 14 14 C 1.33636 * 122.75111 * 95.02555 * 13 12 2 15 15 S 1.76195 * 107.92420 * 179.75695 * 14 13 12 16 16 C 1.70982 * 90.28425 * 0.28306 * 15 14 13 17 17 C 1.50699 * 124.91863 * 179.97438 * 16 15 14 18 18 C 1.52997 * 109.47078 * 239.69654 * 17 16 15 19 19 C 1.52992 * 109.46956 * 119.69342 * 17 16 15 20 20 C 1.53006 * 109.46866 * 359.69477 * 17 16 15 21 21 N 1.29028 * 110.16088 * 359.71148 * 16 15 14 22 22 H 1.08997 * 109.47219 * 183.95160 * 1 2 3 23 23 H 1.09002 * 109.47088 * 303.95515 * 1 2 3 24 24 H 1.09007 * 109.47073 * 63.95166 * 1 2 3 25 25 H 1.09001 * 109.47188 * 186.04130 * 3 2 1 26 26 H 1.09001 * 109.47471 * 306.04275 * 3 2 1 27 27 H 0.96999 * 119.99702 * 180.02562 * 7 6 4 28 28 H 1.08998 * 109.46950 * 173.95766 * 12 2 1 29 29 H 1.09006 * 109.47141 * 53.95641 * 12 2 1 30 30 H 1.08000 * 126.03728 * 359.97438 * 14 13 12 31 31 H 1.09002 * 109.47153 * 299.99793 * 18 17 16 32 32 H 1.09001 * 109.46832 * 179.97438 * 18 17 16 33 33 H 1.09004 * 109.47261 * 59.99965 * 18 17 16 34 34 H 1.09001 * 109.47066 * 180.02562 * 19 17 16 35 35 H 1.08996 * 109.47747 * 299.99900 * 19 17 16 36 36 H 1.09002 * 109.47103 * 60.00312 * 19 17 16 37 37 H 1.08993 * 109.46955 * 300.00219 * 20 17 16 38 38 H 1.09000 * 109.47050 * 60.00048 * 20 17 16 39 39 H 1.09001 * 109.47002 * 179.97438 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 1.2985 5 1 1.0739 1.5115 2.0485 6 6 2.0276 3.3492 1.5289 7 7 2.7135 4.0013 0.6158 8 14 1.5826 4.1870 3.1381 9 1 0.8145 3.2445 3.9910 10 1 2.8240 4.5934 3.8444 11 1 0.7560 5.3885 2.8586 12 6 1.9954 -0.7659 -1.1376 13 6 1.6369 -2.2204 -0.9728 14 6 0.5554 -2.7667 -1.5365 15 16 0.5188 -4.4729 -1.0983 16 6 1.9569 -4.2801 -0.1938 17 6 2.6513 -5.3801 0.5671 18 6 2.7259 -5.0066 2.0490 19 6 4.0664 -5.5664 0.0163 20 6 1.8665 -6.6839 0.4086 21 7 2.3644 -3.0578 -0.2615 22 1 -0.3633 -1.0252 0.0708 23 1 -0.3633 0.5740 0.8524 24 1 -0.3633 0.4513 -0.9233 25 1 3.0797 1.3445 -0.1082 26 1 1.5611 1.9274 -0.8309 27 1 2.9887 4.9172 0.7781 28 1 3.0797 -0.6611 -1.1755 29 1 1.5611 -0.3871 -2.0628 30 1 -0.1666 -2.2538 -2.1547 31 1 3.2850 -4.0778 2.1619 32 1 3.2278 -5.8024 2.5994 33 1 1.7177 -4.8739 2.4414 34 1 4.5686 -6.3623 0.5663 35 1 4.0134 -5.8325 -1.0394 36 1 4.6255 -4.6375 0.1292 37 1 0.8584 -6.5511 0.8010 38 1 1.8134 -6.9499 -0.6471 39 1 2.3690 -7.4796 0.9586 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177187955.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:32:31 Heat of formation + Delta-G solvation = 13.767198 kcal Electronic energy + Delta-G solvation = -18346.584030 eV Core-core repulsion = 15607.804301 eV Total energy + Delta-G solvation = -2738.779729 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.11031 -38.47229 -37.27866 -34.69927 -31.56963 -29.17133 -28.61208 -28.28364 -28.16054 -26.22593 -25.23340 -22.52217 -20.86293 -20.22158 -18.62574 -18.24293 -16.92644 -16.65523 -16.29996 -15.75308 -15.46699 -15.44349 -15.06858 -14.47310 -14.39768 -14.05856 -13.71439 -13.54223 -13.14300 -13.06878 -12.89412 -12.76670 -12.63308 -12.58574 -12.39946 -12.38597 -12.19091 -11.93507 -11.88902 -11.77206 -11.32007 -10.64496 -10.43050 -10.25861 -9.66993 -9.04992 -8.22379 -6.32659 -0.19790 0.48538 0.79689 1.39150 1.40362 1.53939 1.82712 2.39621 3.03336 3.09962 3.44286 3.74206 3.97391 3.99306 4.19226 4.25317 4.40496 4.42549 4.58537 4.62697 4.70943 4.76617 4.80733 4.86367 4.98745 4.99280 4.99974 5.01186 5.12193 5.14122 5.24558 5.29384 5.38711 5.44954 5.61854 6.00841 6.28032 6.54918 6.82424 6.94981 7.36809 8.89033 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.026874 B = 0.004298 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1041.661948 B = 6512.356592 C = 6925.712426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.544 5.544 3 C 0.210 3.790 4 C -0.524 4.524 5 H 0.060 0.940 6 C 0.003 3.997 7 N -0.934 5.934 8 Si 0.971 3.029 9 H -0.265 1.265 10 H -0.278 1.278 11 H -0.275 1.275 12 C 0.128 3.872 13 C 0.073 3.927 14 C -0.268 4.268 15 S 0.163 5.837 16 C 0.049 3.951 17 C 0.008 3.992 18 C -0.132 4.132 19 C -0.130 4.130 20 C -0.148 4.148 21 N -0.490 5.490 22 H 0.067 0.933 23 H 0.057 0.943 24 H 0.019 0.981 25 H 0.002 0.998 26 H -0.031 1.031 27 H 0.265 0.735 28 H 0.065 0.935 29 H 0.051 0.949 30 H 0.189 0.811 31 H 0.039 0.961 32 H 0.090 0.910 33 H 0.051 0.949 34 H 0.089 0.911 35 H 0.058 0.942 36 H 0.041 0.959 37 H 0.064 0.936 38 H 0.068 0.932 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.938 -23.172 -2.934 23.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.268 5.268 3 C 0.084 3.916 4 C -0.562 4.562 5 H 0.078 0.922 6 C -0.195 4.195 7 N -0.574 5.574 8 Si 0.795 3.205 9 H -0.189 1.189 10 H -0.203 1.203 11 H -0.200 1.200 12 C -0.003 4.003 13 C -0.059 4.059 14 C -0.408 4.408 15 S 0.420 5.580 16 C -0.230 4.230 17 C 0.004 3.996 18 C -0.191 4.191 19 C -0.189 4.189 20 C -0.206 4.206 21 N -0.204 5.204 22 H 0.086 0.914 23 H 0.076 0.924 24 H 0.038 0.962 25 H 0.020 0.980 26 H -0.013 1.013 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.206 0.794 31 H 0.058 0.942 32 H 0.108 0.892 33 H 0.070 0.930 34 H 0.107 0.893 35 H 0.077 0.923 36 H 0.061 0.939 37 H 0.083 0.917 38 H 0.087 0.913 39 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.915 -23.914 -2.508 24.361 hybrid contribution 0.046 2.585 -0.341 2.607 sum -3.869 -21.329 -2.849 21.863 Atomic orbital electron populations 1.22181 0.87418 1.00686 1.00084 1.61930 1.08351 1.15311 1.41257 1.19389 0.93612 0.83197 0.95414 1.21448 1.34970 0.97517 1.02243 0.92221 1.25908 0.94906 0.97929 1.00770 1.70089 1.39224 1.11947 1.36158 0.85315 0.78130 0.78197 0.78853 1.18948 1.20328 1.20023 1.20487 0.99956 0.87368 0.92451 1.19986 0.92913 0.96281 0.96756 1.27116 1.04220 0.98739 1.10695 1.83349 1.24366 1.05902 1.44363 1.27690 0.97826 0.95583 1.01889 1.19423 0.95739 0.90245 0.94223 1.21816 1.02012 1.01984 0.93240 1.21809 0.93573 1.02246 1.01272 1.22016 1.00150 0.94993 1.03443 1.65916 1.33337 1.02243 1.18890 0.91450 0.92442 0.96236 0.98021 1.01305 0.92583 0.91612 0.93099 0.79419 0.94193 0.89160 0.93002 0.89262 0.92303 0.93936 0.91709 0.91262 0.88551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.83 9.07 127.69 1.16 2.99 16 2 N -0.54 -25.61 4.74 -931.64 -4.42 -30.03 16 3 C 0.21 11.78 4.72 85.56 0.40 12.19 16 4 C -0.52 -30.94 8.46 25.60 0.22 -30.72 16 5 H 0.06 3.50 7.12 -2.91 -0.02 3.48 16 6 C 0.00 0.17 5.46 84.66 0.46 0.63 16 7 N -0.93 -57.41 13.29 21.45 0.28 -57.12 16 8 Si 0.97 45.45 29.54 68.60 2.03 47.47 16 9 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 10 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 11 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 12 C 0.13 5.15 5.41 85.56 0.46 5.61 16 13 C 0.07 2.53 5.57 41.52 0.23 2.76 16 14 C -0.27 -7.39 9.89 66.78 0.66 -6.73 16 15 S 0.16 3.58 21.57 -56.49 -1.22 2.36 16 16 C 0.05 1.30 5.78 88.52 0.51 1.81 16 17 C 0.01 0.15 0.99 -52.93 -0.05 0.10 16 18 C -0.13 -2.80 8.45 71.98 0.61 -2.20 16 19 C -0.13 -2.46 8.45 71.98 0.61 -1.86 16 20 C -0.15 -1.94 7.54 71.98 0.54 -1.40 16 21 N -0.49 -17.15 10.51 -179.40 -1.89 -19.04 16 22 H 0.07 2.42 6.47 -2.39 -0.02 2.40 16 23 H 0.06 2.54 6.76 -2.39 -0.02 2.52 16 24 H 0.02 0.75 8.14 -2.38 -0.02 0.73 16 25 H 0.00 0.10 7.93 -2.39 -0.02 0.08 16 26 H -0.03 -1.82 8.12 -2.39 -0.02 -1.84 16 27 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 28 H 0.07 2.83 7.93 -2.39 -0.02 2.81 16 29 H 0.05 1.89 8.08 -2.38 -0.02 1.87 16 30 H 0.19 4.36 8.06 -2.91 -0.02 4.34 16 31 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 35 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 36 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.06 0.84 7.93 -2.39 -0.02 0.82 16 38 H 0.07 0.82 7.92 -2.39 -0.02 0.80 16 39 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -69.66 330.51 1.60 -68.06 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: 1.00 Total: 5.12 kcal Atomic # 6 Polarization: -22.63 SS G_CDS: 5.81 Total: -16.82 kcal Atomic # 7 Polarization: -100.17 SS G_CDS: -6.02 Total: -106.19 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Atomic # 16 Polarization: 3.58 SS G_CDS: -1.22 Total: 2.36 kcal Total: -69.66 1.60 -68.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177187955.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.822 kcal (2) G-P(sol) polarization free energy of solvation -69.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds