Wall clock time and date at job start Mon Mar 30 2020 08:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.46809 * 2 1 4 4 C 1.52995 * 109.46851 * 119.99723 * 2 1 3 5 5 C 1.53000 * 115.55239 * 29.36915 * 4 2 1 6 6 C 1.52991 * 117.51980 * 243.66070 * 4 2 1 7 7 C 1.52995 * 60.00399 * 252.52118 * 6 4 2 8 8 H 1.09001 * 117.50190 * 252.51242 * 7 6 4 9 9 C 1.50701 * 117.51652 * 107.47659 * 7 6 4 10 10 O 1.20826 * 120.00382 * 272.31360 * 9 7 6 11 11 O 1.34235 * 119.99773 * 92.32401 * 9 7 6 12 12 C 1.45193 * 116.99807 * 179.97438 * 11 9 7 13 13 C 1.53002 * 109.47114 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.46996 * 299.99977 * 13 12 11 15 15 C 1.52991 * 109.47143 * 59.99785 * 13 12 11 16 16 C 1.50697 * 109.47232 * 180.02562 * 13 12 11 17 17 H 1.08000 * 120.00495 * 356.93055 * 16 13 12 18 18 C 1.37880 * 120.00105 * 176.93458 * 16 13 12 19 19 N 1.31512 * 119.99756 * 5.95486 * 18 16 13 20 20 Si 1.86800 * 120.00067 * 185.96246 * 18 16 13 21 21 H 1.48501 * 109.47233 * 94.98399 * 20 18 16 22 22 H 1.48497 * 109.47297 * 214.98339 * 20 18 16 23 23 H 1.48498 * 109.47228 * 334.98409 * 20 18 16 24 24 H 1.09000 * 109.46945 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47207 * 299.99631 * 1 2 3 26 26 H 1.09001 * 109.46796 * 60.00435 * 1 2 3 27 27 H 1.08993 * 109.46756 * 240.00083 * 2 1 3 28 28 H 1.08997 * 109.47105 * 179.48757 * 3 2 1 29 29 H 1.09004 * 109.47531 * 299.48541 * 3 2 1 30 30 H 1.08998 * 109.47427 * 59.48735 * 3 2 1 31 31 H 1.08994 * 109.47518 * 205.66900 * 5 4 2 32 32 H 1.09002 * 109.47144 * 325.66544 * 5 4 2 33 33 H 1.09001 * 109.47726 * 85.66204 * 5 4 2 34 34 H 1.09004 * 117.49887 * 145.03213 * 6 4 2 35 35 H 1.08995 * 117.50188 * 0.02562 * 6 4 2 36 36 H 1.09003 * 109.47493 * 299.99293 * 12 11 9 37 37 H 1.09000 * 109.47676 * 59.99734 * 12 11 9 38 38 H 1.08997 * 109.47188 * 63.37301 * 14 13 12 39 39 H 1.08998 * 109.46945 * 183.37595 * 14 13 12 40 40 H 1.09002 * 109.47109 * 303.37191 * 14 13 12 41 41 H 1.09006 * 109.47529 * 60.00089 * 15 13 12 42 42 H 1.09002 * 109.47450 * 179.97438 * 15 13 12 43 43 H 1.09003 * 109.47611 * 300.00279 * 15 13 12 44 44 H 0.97005 * 119.99546 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.1258 -1.8190 1.7969 6 6 2.8432 0.0990 2.2606 7 6 3.5502 -0.9306 1.3771 8 1 3.8924 -1.8505 1.8513 9 6 4.4215 -0.4107 0.2628 10 8 3.9401 -0.1718 -0.8194 11 8 5.7326 -0.2132 0.4725 12 6 6.5107 0.2887 -0.6459 13 6 7.9712 0.4498 -0.2196 14 6 8.0565 1.4381 0.9453 15 6 8.5266 -0.9062 0.2203 16 6 8.7787 0.9714 -1.3802 17 1 8.3089 1.1213 -2.3410 18 6 10.1175 1.2571 -1.2155 19 7 10.7175 0.9654 -0.0822 20 14 11.0789 2.0587 -2.6021 21 1 11.1036 3.5299 -2.4014 22 1 12.4690 1.5364 -2.6071 23 1 10.4284 1.7471 -3.9001 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4426 0.0092 29 1 1.6842 1.9537 -0.8946 30 1 1.6692 1.9590 0.8853 31 1 1.3096 -1.9463 2.8636 32 1 0.0847 -1.5373 1.6387 33 1 1.3315 -2.7555 1.2784 34 1 2.7203 -0.1435 3.3162 35 1 3.0082 1.1528 2.0364 36 1 6.4497 -0.4151 -1.4760 37 1 6.1153 1.2550 -0.9591 38 1 7.5222 1.0334 1.8049 39 1 9.1016 1.5987 1.2098 40 1 7.6063 2.3862 0.6511 41 1 8.4659 -1.6103 -0.6096 42 1 9.5673 -0.7915 0.5236 43 1 7.9425 -1.2830 1.0599 44 1 11.6595 1.1661 0.0335 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184694665.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:19 Heat of formation + Delta-G solvation = -75.075828 kcal Electronic energy + Delta-G solvation = -21647.132474 eV Core-core repulsion = 18565.287694 eV Total energy + Delta-G solvation = -3081.844779 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.65964 -38.47116 -36.27454 -34.79377 -33.24013 -31.24776 -29.50918 -26.71999 -25.84403 -25.60594 -25.18299 -23.80254 -22.89761 -20.24432 -18.84630 -18.30412 -17.31867 -16.13785 -15.87392 -15.70885 -14.83053 -14.60842 -14.45854 -14.12857 -13.42506 -13.09051 -13.00957 -12.78379 -12.68752 -12.44404 -11.94448 -11.76802 -11.59793 -11.48084 -11.18191 -11.07977 -10.99763 -10.83843 -10.69995 -10.66915 -10.37443 -10.29139 -10.16544 -9.95972 -9.81635 -9.54247 -9.37979 -9.20168 -8.76002 -8.35141 -6.01878 -4.12732 2.57391 3.16149 3.27901 3.35293 3.39448 3.69122 4.38788 4.52309 4.67180 4.77295 4.87484 5.17331 5.24234 5.32353 5.39108 5.48198 5.62888 5.64604 5.66000 5.68789 5.86610 5.91149 5.94897 6.01182 6.03548 6.11797 6.12437 6.30121 6.44506 6.49511 6.53235 6.77343 6.99186 7.12601 7.16438 7.19850 7.42650 7.62697 7.70878 8.06208 8.17207 8.33202 8.42051 8.87138 9.52424 10.99349 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.036516 B = 0.004169 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.603143 B = 6715.127421 C = 7059.910736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.060 4.060 3 C -0.148 4.148 4 C -0.089 4.089 5 C -0.122 4.122 6 C -0.152 4.152 7 C -0.159 4.159 8 H 0.132 0.868 9 C 0.482 3.518 10 O -0.508 6.508 11 O -0.345 6.345 12 C 0.085 3.915 13 C 0.069 3.931 14 C -0.129 4.129 15 C -0.128 4.128 16 C -0.512 4.512 17 H 0.057 0.943 18 C 0.069 3.931 19 N -0.881 5.881 20 Si 0.894 3.106 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.095 0.905 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.058 0.942 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.018 0.982 39 H 0.084 0.916 40 H 0.021 0.979 41 H 0.022 0.978 42 H 0.084 0.916 43 H 0.016 0.984 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.850 -3.138 5.108 17.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.079 4.079 3 C -0.205 4.205 4 C -0.089 4.089 5 C -0.179 4.179 6 C -0.189 4.189 7 C -0.178 4.178 8 H 0.150 0.850 9 C 0.325 3.675 10 O -0.398 6.398 11 O -0.261 6.261 12 C 0.012 3.988 13 C 0.069 3.931 14 C -0.187 4.187 15 C -0.186 4.186 16 C -0.550 4.550 17 H 0.075 0.925 18 C -0.133 4.133 19 N -0.519 5.519 20 Si 0.722 3.278 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.199 1.199 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.113 0.887 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.037 0.963 39 H 0.102 0.898 40 H 0.040 0.960 41 H 0.041 0.959 42 H 0.103 0.897 43 H 0.035 0.965 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -16.750 -3.038 4.854 17.702 hybrid contribution 0.724 0.447 -0.875 1.221 sum -16.026 -2.591 3.979 16.714 Atomic orbital electron populations 1.21951 0.95670 1.01360 1.01364 1.20691 0.94418 0.96093 0.96651 1.22071 1.02242 0.95484 1.00683 1.21711 0.89644 0.99484 0.98087 1.21518 0.99292 0.96796 1.00269 1.23392 1.01287 0.97584 0.96588 1.21867 0.93322 1.02805 0.99813 0.84984 1.22478 0.82354 0.74681 0.87953 1.90592 1.74598 1.47949 1.26629 1.86533 1.19549 1.75540 1.44473 1.23653 0.92524 0.97096 0.85498 1.18242 0.85857 0.93882 0.95111 1.21749 1.03120 0.97180 0.96640 1.21778 1.03267 0.96271 0.97290 1.20948 0.94233 1.44011 0.95813 0.92519 1.24854 0.97320 0.95310 0.95836 1.69847 1.10906 1.46664 1.24482 0.86544 0.79242 0.79619 0.82397 1.20666 1.21177 1.19879 0.92481 0.92913 0.92884 0.88696 0.91799 0.92954 0.93425 0.92311 0.90842 0.91980 0.87764 0.87532 0.92661 0.92671 0.96336 0.89777 0.96004 0.95906 0.89729 0.96530 0.92928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 7.99 37.16 0.30 -1.11 16 2 C -0.06 -0.75 2.37 -90.62 -0.21 -0.96 16 3 C -0.15 -1.96 7.18 37.16 0.27 -1.70 16 4 C -0.09 -1.02 2.51 -154.51 -0.39 -1.40 16 5 C -0.12 -1.07 9.37 37.16 0.35 -0.72 16 6 C -0.15 -1.73 8.94 -26.74 -0.24 -1.97 16 7 C -0.16 -2.15 6.02 -91.77 -0.55 -2.70 16 8 H 0.13 1.59 8.14 -51.93 -0.42 1.17 16 9 C 0.48 8.57 6.41 36.01 0.23 8.81 16 10 O -0.51 -9.75 11.63 -18.75 -0.22 -9.97 16 11 O -0.35 -7.04 8.94 -39.27 -0.35 -7.39 16 12 C 0.09 1.91 4.26 37.16 0.16 2.07 16 13 C 0.07 1.72 0.58 -155.66 -0.09 1.63 16 14 C -0.13 -3.15 8.08 37.16 0.30 -2.85 16 15 C -0.13 -3.14 8.14 37.15 0.30 -2.84 16 16 C -0.51 -13.80 8.01 -34.44 -0.28 -14.07 16 17 H 0.06 1.53 7.75 -52.49 -0.41 1.12 16 18 C 0.07 1.84 5.12 -17.82 -0.09 1.75 16 19 N -0.88 -24.06 9.37 55.43 0.52 -23.54 16 20 Si 0.89 20.92 29.54 -169.99 -5.02 15.90 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 24 H 0.06 0.49 6.59 -51.93 -0.34 0.15 16 25 H 0.05 0.47 8.12 -51.93 -0.42 0.04 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.09 1.40 6.51 -51.93 -0.34 1.07 16 28 H 0.06 1.02 4.56 -51.93 -0.24 0.78 16 29 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.55 7.27 -51.93 -0.38 0.17 16 31 H 0.06 0.45 7.90 -51.93 -0.41 0.04 16 32 H 0.07 0.56 5.61 -51.93 -0.29 0.27 16 33 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.10 0.96 8.05 -51.93 -0.42 0.54 16 35 H 0.11 1.30 5.82 -51.93 -0.30 0.99 16 36 H 0.05 1.26 8.13 -51.93 -0.42 0.83 16 37 H 0.05 1.25 8.13 -51.93 -0.42 0.82 16 38 H 0.02 0.41 7.78 -51.93 -0.40 0.00 16 39 H 0.08 2.21 5.97 -51.93 -0.31 1.90 16 40 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.08 2.23 6.10 -51.93 -0.32 1.92 16 43 H 0.02 0.36 7.68 -51.93 -0.40 -0.04 16 44 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 334.92 15.07 5.05 5.05 Total: -1.00 -28.04 334.92 -7.46 -35.50 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -7.49 Total: 0.52 kcal Atomic # 6 Polarization: -16.12 SS G_CDS: 0.05 Total: -16.07 kcal Atomic # 7 Polarization: -24.06 SS G_CDS: 0.52 Total: -23.54 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -0.57 Total: -17.36 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -28.04 -7.46 -35.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184694665.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.576 kcal (2) G-P(sol) polarization free energy of solvation -28.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds