Wall clock time and date at job start Mon Mar 30 2020 08:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.52998 * 109.46809 * 2 1 4 4 C 1.52995 * 109.46851 * 119.99723 * 2 1 3 5 5 C 1.53000 * 115.55239 * 29.36915 * 4 2 1 6 6 C 1.52991 * 117.51980 * 243.66070 * 4 2 1 7 7 C 1.52995 * 60.00399 * 252.52118 * 6 4 2 8 8 H 1.09001 * 117.50190 * 252.51242 * 7 6 4 9 9 C 1.50701 * 117.51652 * 107.47659 * 7 6 4 10 10 O 1.20826 * 120.00382 * 272.31360 * 9 7 6 11 11 O 1.34235 * 119.99773 * 92.32401 * 9 7 6 12 12 C 1.45193 * 116.99807 * 179.97438 * 11 9 7 13 13 C 1.53002 * 109.47114 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.46996 * 299.99977 * 13 12 11 15 15 C 1.52991 * 109.47143 * 59.99785 * 13 12 11 16 16 C 1.50697 * 109.47232 * 180.02562 * 13 12 11 17 17 H 1.08000 * 120.00495 * 356.93055 * 16 13 12 18 18 C 1.37880 * 120.00105 * 176.93458 * 16 13 12 19 19 N 1.31512 * 119.99756 * 5.95486 * 18 16 13 20 20 Si 1.86800 * 120.00067 * 185.96246 * 18 16 13 21 21 H 1.48501 * 109.47233 * 94.98399 * 20 18 16 22 22 H 1.48497 * 109.47297 * 214.98339 * 20 18 16 23 23 H 1.48498 * 109.47228 * 334.98409 * 20 18 16 24 24 H 1.09000 * 109.46945 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47207 * 299.99631 * 1 2 3 26 26 H 1.09001 * 109.46796 * 60.00435 * 1 2 3 27 27 H 1.08993 * 109.46756 * 240.00083 * 2 1 3 28 28 H 1.08997 * 109.47105 * 179.48757 * 3 2 1 29 29 H 1.09004 * 109.47531 * 299.48541 * 3 2 1 30 30 H 1.08998 * 109.47427 * 59.48735 * 3 2 1 31 31 H 1.08994 * 109.47518 * 205.66900 * 5 4 2 32 32 H 1.09002 * 109.47144 * 325.66544 * 5 4 2 33 33 H 1.09001 * 109.47726 * 85.66204 * 5 4 2 34 34 H 1.09004 * 117.49887 * 145.03213 * 6 4 2 35 35 H 1.08995 * 117.50188 * 0.02562 * 6 4 2 36 36 H 1.09003 * 109.47493 * 299.99293 * 12 11 9 37 37 H 1.09000 * 109.47676 * 59.99734 * 12 11 9 38 38 H 1.08997 * 109.47188 * 63.37301 * 14 13 12 39 39 H 1.08998 * 109.46945 * 183.37595 * 14 13 12 40 40 H 1.09002 * 109.47109 * 303.37191 * 14 13 12 41 41 H 1.09006 * 109.47529 * 60.00089 * 15 13 12 42 42 H 1.09002 * 109.47450 * 179.97438 * 15 13 12 43 43 H 1.09003 * 109.47611 * 300.00279 * 15 13 12 44 44 H 0.97005 * 119.99546 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.1258 -1.8190 1.7969 6 6 2.8432 0.0990 2.2606 7 6 3.5502 -0.9306 1.3771 8 1 3.8924 -1.8505 1.8513 9 6 4.4215 -0.4107 0.2628 10 8 3.9401 -0.1718 -0.8194 11 8 5.7326 -0.2132 0.4725 12 6 6.5107 0.2887 -0.6459 13 6 7.9712 0.4498 -0.2196 14 6 8.0565 1.4381 0.9453 15 6 8.5266 -0.9062 0.2203 16 6 8.7787 0.9714 -1.3802 17 1 8.3089 1.1213 -2.3410 18 6 10.1175 1.2571 -1.2155 19 7 10.7175 0.9654 -0.0822 20 14 11.0789 2.0587 -2.6021 21 1 11.1036 3.5299 -2.4014 22 1 12.4690 1.5364 -2.6071 23 1 10.4284 1.7471 -3.9001 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 3.1299 1.4426 0.0092 29 1 1.6842 1.9537 -0.8946 30 1 1.6692 1.9590 0.8853 31 1 1.3096 -1.9463 2.8636 32 1 0.0847 -1.5373 1.6387 33 1 1.3315 -2.7555 1.2784 34 1 2.7203 -0.1435 3.3162 35 1 3.0082 1.1528 2.0364 36 1 6.4497 -0.4151 -1.4760 37 1 6.1153 1.2550 -0.9591 38 1 7.5222 1.0334 1.8049 39 1 9.1016 1.5987 1.2098 40 1 7.6063 2.3862 0.6511 41 1 8.4659 -1.6103 -0.6096 42 1 9.5673 -0.7915 0.5236 43 1 7.9425 -1.2830 1.0599 44 1 11.6595 1.1661 0.0335 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184694665.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:18 Heat of formation + Delta-G solvation = -87.503732 kcal Electronic energy + Delta-G solvation = -21647.671388 eV Core-core repulsion = 18565.287694 eV Total energy + Delta-G solvation = -3082.383694 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.94789 -39.75648 -37.93475 -36.54905 -34.20618 -33.25795 -30.33997 -28.05586 -27.60051 -27.34491 -26.95856 -25.09691 -23.84648 -21.58569 -20.72701 -19.30648 -18.71126 -17.79285 -17.57731 -17.22272 -16.65457 -15.78651 -15.47780 -15.33550 -14.93873 -14.58545 -14.39537 -14.04789 -13.86368 -13.56161 -13.34061 -13.25632 -13.13615 -12.85797 -12.65507 -12.63698 -12.43424 -12.35903 -12.15315 -12.04318 -11.89959 -11.74038 -11.61755 -11.39319 -11.24515 -11.18534 -11.00202 -10.77217 -10.47606 -10.40329 -8.06729 -6.24351 1.20695 1.41672 1.43623 1.52602 1.80027 2.44041 2.68771 3.16373 3.57067 3.72512 3.77642 3.95236 4.11598 4.24454 4.26414 4.28937 4.43644 4.58932 4.63545 4.74799 4.80110 4.82399 4.86025 4.95958 5.01240 5.01899 5.05046 5.05911 5.18027 5.20478 5.20973 5.23399 5.34384 5.39110 5.46918 5.59143 5.60307 5.61837 5.75609 6.04951 6.15500 6.35479 6.77876 6.88459 7.43368 8.93151 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.036516 B = 0.004169 C = 0.003965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.603143 B = 6715.127421 C = 7059.910736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.064 4.064 3 C -0.145 4.145 4 C -0.079 4.079 5 C -0.119 4.119 6 C -0.139 4.139 7 C -0.179 4.179 8 H 0.150 0.850 9 C 0.476 3.524 10 O -0.527 6.527 11 O -0.354 6.354 12 C 0.100 3.900 13 C 0.060 3.940 14 C -0.117 4.117 15 C -0.116 4.116 16 C -0.535 4.535 17 H 0.048 0.952 18 C 0.029 3.971 19 N -0.898 5.898 20 Si 0.952 3.048 21 H -0.276 1.276 22 H -0.281 1.281 23 H -0.274 1.274 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.032 0.968 29 H 0.047 0.953 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.135 0.865 35 H 0.095 0.905 36 H 0.045 0.955 37 H 0.046 0.954 38 H 0.031 0.969 39 H 0.063 0.937 40 H 0.019 0.981 41 H 0.018 0.982 42 H 0.064 0.936 43 H 0.030 0.970 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.529 -3.493 6.259 19.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.082 4.082 3 C -0.202 4.202 4 C -0.079 4.079 5 C -0.176 4.176 6 C -0.176 4.176 7 C -0.198 4.198 8 H 0.168 0.832 9 C 0.321 3.679 10 O -0.417 6.417 11 O -0.270 6.270 12 C 0.026 3.974 13 C 0.060 3.940 14 C -0.175 4.175 15 C -0.174 4.174 16 C -0.573 4.573 17 H 0.066 0.934 18 C -0.171 4.171 19 N -0.536 5.536 20 Si 0.778 3.222 21 H -0.202 1.202 22 H -0.206 1.206 23 H -0.199 1.199 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.070 0.930 27 H 0.083 0.917 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.106 0.894 33 H 0.081 0.919 34 H 0.153 0.847 35 H 0.114 0.886 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.050 0.950 39 H 0.082 0.918 40 H 0.038 0.962 41 H 0.037 0.963 42 H 0.083 0.917 43 H 0.049 0.951 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.444 -3.399 6.010 19.694 hybrid contribution 1.197 0.564 -1.239 1.813 sum -17.247 -2.835 4.771 18.118 Atomic orbital electron populations 1.21902 0.93196 1.02552 1.02053 1.20661 0.96479 0.95013 0.96085 1.22036 1.00148 0.96708 1.01350 1.21874 0.88505 0.99985 0.97569 1.21568 0.99246 0.95565 1.01201 1.23537 0.99554 0.96527 0.97991 1.22038 0.93952 1.04206 0.99604 0.83213 1.23409 0.81508 0.73930 0.89079 1.90590 1.74511 1.48708 1.27896 1.86524 1.21150 1.75947 1.43421 1.23184 0.91850 0.96479 0.85872 1.18273 0.87049 0.93982 0.94738 1.21588 1.01825 0.97106 0.96956 1.21621 1.02117 0.96137 0.97548 1.21190 0.95031 1.44880 0.96209 0.93411 1.25508 0.98040 0.95617 0.97944 1.69950 1.11146 1.46823 1.25689 0.85639 0.77994 0.78783 0.79775 1.20209 1.20601 1.19854 0.91036 0.91457 0.93002 0.91725 0.94907 0.93420 0.91582 0.90523 0.89393 0.91911 0.84699 0.88633 0.93646 0.93579 0.95007 0.91791 0.96186 0.96279 0.91739 0.95107 0.92773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 7.99 71.99 0.58 -1.78 16 2 C -0.06 -1.51 2.37 -10.79 -0.03 -1.54 16 3 C -0.15 -3.81 7.18 71.98 0.52 -3.30 16 4 C -0.08 -1.62 2.51 -52.19 -0.13 -1.75 16 5 C -0.12 -1.64 9.37 71.98 0.67 -0.96 16 6 C -0.14 -2.82 8.94 30.59 0.27 -2.54 16 7 C -0.18 -4.57 6.02 -11.54 -0.07 -4.64 16 8 H 0.15 3.26 8.14 -2.39 -0.02 3.24 16 9 C 0.48 17.01 6.41 71.24 0.46 17.47 16 10 O -0.53 -20.79 11.63 21.96 0.26 -20.54 16 11 O -0.35 -14.54 8.94 -51.46 -0.46 -15.00 16 12 C 0.10 4.58 4.26 71.98 0.31 4.89 16 13 C 0.06 3.02 0.58 -52.93 -0.03 2.99 16 14 C -0.12 -5.74 8.08 71.98 0.58 -5.16 16 15 C -0.12 -5.74 8.14 71.98 0.59 -5.16 16 16 C -0.54 -29.30 8.01 25.60 0.20 -29.10 16 17 H 0.05 2.63 7.75 -2.91 -0.02 2.61 16 18 C 0.03 1.57 5.12 84.66 0.43 2.00 16 19 N -0.90 -49.36 9.37 21.45 0.20 -49.16 16 20 Si 0.95 43.04 29.54 68.60 2.03 45.07 16 21 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 23 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 24 H 0.07 1.00 6.59 -2.39 -0.02 0.99 16 25 H 0.07 0.95 8.12 -2.39 -0.02 0.93 16 26 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 27 H 0.06 1.93 6.51 -2.39 -0.02 1.91 16 28 H 0.03 1.05 4.56 -2.39 -0.01 1.04 16 29 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.07 1.44 7.27 -2.39 -0.02 1.42 16 31 H 0.08 0.81 7.90 -2.39 -0.02 0.80 16 32 H 0.09 0.98 5.61 -2.39 -0.01 0.97 16 33 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.14 1.91 8.05 -2.39 -0.02 1.89 16 35 H 0.10 2.17 5.82 -2.39 -0.01 2.16 16 36 H 0.05 2.14 8.13 -2.39 -0.02 2.12 16 37 H 0.05 2.16 8.13 -2.39 -0.02 2.14 16 38 H 0.03 1.42 7.78 -2.39 -0.02 1.40 16 39 H 0.06 3.40 5.97 -2.39 -0.01 3.38 16 40 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 42 H 0.06 3.44 6.10 -2.39 -0.01 3.42 16 43 H 0.03 1.38 7.68 -2.39 -0.02 1.36 16 44 H 0.26 13.75 8.31 -92.70 -0.77 12.98 16 Total: -1.00 -60.82 334.92 7.34 -53.48 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: 0.96 Total: 14.73 kcal Atomic # 6 Polarization: -32.93 SS G_CDS: 4.35 Total: -28.58 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: 0.20 Total: -49.16 kcal Atomic # 8 Polarization: -35.34 SS G_CDS: -0.20 Total: -35.54 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -60.82 7.34 -53.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184694665.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.019 kcal (2) G-P(sol) polarization free energy of solvation -60.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds