Wall clock time and date at job start Mon Mar 30 2020 08:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47646 * 2 1 4 4 C 1.53002 * 109.46918 * 120.00292 * 2 1 3 5 5 C 1.52994 * 115.56322 * 34.30434 * 4 2 1 6 6 C 1.53078 * 117.48979 * 248.59883 * 4 2 1 7 7 C 1.52999 * 59.98494 * 252.51195 * 6 4 2 8 8 H 1.09000 * 117.49873 * 107.50115 * 7 6 4 9 9 C 1.50703 * 117.50181 * 252.50081 * 7 6 4 10 10 O 1.20821 * 119.99879 * 68.74617 * 9 7 6 11 11 O 1.34222 * 119.99985 * 248.74354 * 9 7 6 12 12 C 1.45200 * 117.00094 * 179.97438 * 11 9 7 13 13 C 1.53006 * 109.47003 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47127 * 299.99754 * 13 12 11 15 15 C 1.52997 * 109.47164 * 59.99917 * 13 12 11 16 16 C 1.50699 * 109.46866 * 179.97438 * 13 12 11 17 17 H 1.08003 * 119.99963 * 359.97438 * 16 13 12 18 18 C 1.37874 * 120.00270 * 179.97438 * 16 13 12 19 19 N 1.31522 * 119.99835 * 0.02562 * 18 16 13 20 20 Si 1.86793 * 120.00496 * 179.97438 * 18 16 13 21 21 H 1.48505 * 109.47183 * 60.00274 * 20 18 16 22 22 H 1.48496 * 109.47425 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47216 * 300.00267 * 20 18 16 24 24 H 1.08998 * 109.47840 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47099 * 300.00089 * 1 2 3 26 26 H 1.09002 * 109.47068 * 59.99705 * 1 2 3 27 27 H 1.09002 * 109.47099 * 239.99911 * 2 1 3 28 28 H 1.08993 * 109.47370 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47128 * 300.00258 * 3 2 1 30 30 H 1.09002 * 109.46944 * 59.99816 * 3 2 1 31 31 H 1.08998 * 109.47323 * 205.69032 * 5 4 2 32 32 H 1.08994 * 109.47181 * 325.69595 * 5 4 2 33 33 H 1.09004 * 109.46941 * 85.69536 * 5 4 2 34 34 H 1.09000 * 117.50776 * 145.03781 * 6 4 2 35 35 H 1.08999 * 117.49541 * 359.97438 * 6 4 2 36 36 H 1.08993 * 109.47475 * 60.00347 * 12 11 9 37 37 H 1.09000 * 109.47147 * 300.00141 * 12 11 9 38 38 H 1.09001 * 109.46832 * 60.00321 * 14 13 12 39 39 H 1.09002 * 109.47153 * 180.02562 * 14 13 12 40 40 H 1.08996 * 109.46952 * 300.00302 * 14 13 12 41 41 H 1.09000 * 109.47140 * 60.00051 * 15 13 12 42 42 H 1.09001 * 109.47230 * 179.97438 * 15 13 12 43 43 H 1.09001 * 109.47375 * 300.00034 * 15 13 12 44 44 H 0.96992 * 120.00038 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.1850 -1.8962 1.7284 6 6 2.7426 0.1230 2.3153 7 6 3.5549 -0.8282 1.4344 8 1 4.1883 -0.3850 0.6659 9 6 4.0909 -2.0828 2.0746 10 8 3.3316 -2.9573 2.4185 11 8 5.4119 -2.2286 2.2627 12 6 5.8568 -3.4624 2.8856 13 6 7.3812 -3.4468 3.0165 14 6 8.0111 -3.3205 1.6279 15 6 7.8068 -2.2574 3.8796 16 6 7.8429 -4.7271 3.6635 17 1 7.1212 -5.4767 3.9528 18 6 9.1865 -4.9415 3.8862 19 7 10.0653 -4.0284 3.5344 20 14 9.7588 -6.5281 4.6889 21 1 9.3451 -7.6833 3.8524 22 1 11.2383 -6.5131 4.8159 23 1 9.1480 -6.6492 6.0370 24 1 -0.3635 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.3349 -2.0422 2.7981 32 1 0.1338 -1.6835 1.5345 33 1 1.4775 -2.8001 1.1939 34 1 2.5958 -0.1587 3.3580 35 1 2.8416 1.1919 2.1261 36 1 5.5533 -4.3098 2.2709 37 1 5.4084 -3.5522 3.8750 38 1 7.6770 -2.3942 1.1604 39 1 9.0970 -3.3098 1.7211 40 1 7.7078 -4.1678 1.0130 41 1 7.3580 -2.3474 4.8689 42 1 8.8927 -2.2465 3.9733 43 1 7.4727 -1.3311 3.4121 44 1 11.0106 -4.1794 3.6907 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184694706.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:26 Heat of formation + Delta-G solvation = -81.367123 kcal Electronic energy + Delta-G solvation = -21293.798084 eV Core-core repulsion = 18211.680493 eV Total energy + Delta-G solvation = -3082.117590 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.49327 -38.63303 -36.37971 -34.78661 -33.26155 -31.24695 -29.40604 -26.81327 -25.92508 -25.59891 -25.19424 -23.78830 -23.12154 -20.16464 -18.82962 -18.34013 -17.35167 -16.07157 -15.77860 -15.56628 -15.41142 -14.74677 -14.57193 -13.68778 -13.42630 -13.10429 -12.98895 -12.79390 -12.61242 -12.51550 -11.98318 -11.79885 -11.61006 -11.55917 -11.45129 -11.20335 -11.14624 -10.93453 -10.83262 -10.72490 -10.39167 -10.17818 -10.14383 -9.90801 -9.84243 -9.64446 -9.37915 -9.22877 -8.74655 -8.36223 -6.00682 -4.12437 2.52868 3.17948 3.30075 3.34429 3.38556 3.72483 4.38687 4.51807 4.57226 4.70401 4.81621 4.94126 5.17501 5.25453 5.35496 5.39253 5.42565 5.56867 5.68401 5.69351 5.79672 5.85613 5.92423 5.96948 6.03768 6.12528 6.13264 6.13829 6.18588 6.48623 6.51074 6.78255 7.00418 7.12834 7.16560 7.20074 7.43176 7.64126 7.71043 8.06750 8.17809 8.34278 8.42569 8.87392 9.52929 11.00509 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.042729 B = 0.003739 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.132186 B = 7487.487561 C = 7795.924935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.061 4.061 3 C -0.153 4.153 4 C -0.087 4.087 5 C -0.111 4.111 6 C -0.149 4.149 7 C -0.160 4.160 8 H 0.130 0.870 9 C 0.482 3.518 10 O -0.516 6.516 11 O -0.346 6.346 12 C 0.085 3.915 13 C 0.070 3.930 14 C -0.129 4.129 15 C -0.129 4.129 16 C -0.513 4.513 17 H 0.056 0.944 18 C 0.068 3.932 19 N -0.883 5.883 20 Si 0.896 3.104 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.277 1.277 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.053 0.947 27 H 0.076 0.924 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.112 0.888 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.016 0.984 39 H 0.084 0.916 40 H 0.022 0.978 41 H 0.022 0.978 42 H 0.084 0.916 43 H 0.017 0.983 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.921 10.147 -6.054 19.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.079 4.079 3 C -0.210 4.210 4 C -0.087 4.087 5 C -0.168 4.168 6 C -0.185 4.185 7 C -0.179 4.179 8 H 0.148 0.852 9 C 0.326 3.674 10 O -0.406 6.406 11 O -0.261 6.261 12 C 0.012 3.988 13 C 0.070 3.930 14 C -0.187 4.187 15 C -0.186 4.186 16 C -0.551 4.551 17 H 0.074 0.926 18 C -0.133 4.133 19 N -0.521 5.521 20 Si 0.723 3.277 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.094 0.906 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.117 0.883 35 H 0.130 0.870 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.035 0.965 39 H 0.102 0.898 40 H 0.041 0.959 41 H 0.041 0.959 42 H 0.102 0.898 43 H 0.036 0.964 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.886 9.888 -5.925 18.828 hybrid contribution 0.495 -1.056 0.509 1.272 sum -14.392 8.832 -5.417 17.733 Atomic orbital electron populations 1.21894 0.94666 1.02125 1.01607 1.20620 0.95951 0.95447 0.95872 1.22006 1.01338 0.95791 1.01889 1.21713 0.90536 0.99140 0.97314 1.21507 0.97496 0.95753 1.02042 1.23375 1.01064 0.97447 0.96651 1.21892 0.95275 0.96378 1.04389 0.85210 1.22486 0.81769 0.87265 0.75911 1.90612 1.58633 1.42951 1.48383 1.86509 1.23294 1.43922 1.72411 1.23647 0.98629 0.81108 0.95370 1.18233 0.85217 0.95517 0.94046 1.21763 1.04216 0.96591 0.96091 1.21762 1.04110 0.95583 0.97194 1.20912 0.92325 1.01748 1.40113 0.92589 1.24857 0.96521 0.96665 0.95294 1.69823 1.01731 1.33505 1.47017 0.86599 0.77471 0.83643 0.79940 1.20239 1.21203 1.20247 0.91946 0.92449 0.92758 0.90596 0.92294 0.92535 0.92087 0.91750 0.92407 0.91427 0.88290 0.87002 0.92651 0.92686 0.96466 0.89754 0.95886 0.95905 0.89763 0.96443 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 8.20 37.16 0.30 -0.83 16 2 C -0.06 -0.55 3.15 -90.62 -0.29 -0.83 16 3 C -0.15 -1.18 7.79 37.16 0.29 -0.89 16 4 C -0.09 -0.99 2.47 -154.47 -0.38 -1.37 16 5 C -0.11 -1.39 7.74 37.15 0.29 -1.10 16 6 C -0.15 -1.67 8.92 -26.69 -0.24 -1.91 16 7 C -0.16 -2.19 5.66 -91.77 -0.52 -2.71 16 8 H 0.13 1.60 7.61 -51.93 -0.40 1.21 16 9 C 0.48 8.79 7.72 36.01 0.28 9.07 16 10 O -0.52 -10.24 12.86 -18.75 -0.24 -10.49 16 11 O -0.35 -7.17 8.88 -39.24 -0.35 -7.52 16 12 C 0.09 1.94 4.26 37.16 0.16 2.10 16 13 C 0.07 1.76 0.58 -155.66 -0.09 1.67 16 14 C -0.13 -3.17 8.11 37.16 0.30 -2.87 16 15 C -0.13 -3.17 8.11 37.16 0.30 -2.86 16 16 C -0.51 -13.92 8.01 -34.44 -0.28 -14.20 16 17 H 0.06 1.51 7.74 -52.48 -0.41 1.10 16 18 C 0.07 1.84 5.15 -17.82 -0.09 1.75 16 19 N -0.88 -24.23 9.35 55.43 0.52 -23.71 16 20 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 21 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H 0.06 0.49 6.45 -51.93 -0.33 0.16 16 25 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.47 7.07 -51.93 -0.37 0.10 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.44 6.98 -51.93 -0.36 0.08 16 31 H 0.06 0.90 7.02 -51.93 -0.36 0.54 16 32 H 0.06 0.58 5.58 -51.93 -0.29 0.29 16 33 H 0.07 0.96 7.26 -51.93 -0.38 0.59 16 34 H 0.10 1.18 8.05 -51.93 -0.42 0.76 16 35 H 0.11 1.01 5.85 -51.93 -0.30 0.71 16 36 H 0.06 1.27 8.13 -51.93 -0.42 0.85 16 37 H 0.05 1.26 8.13 -51.93 -0.42 0.84 16 38 H 0.02 0.38 7.68 -51.93 -0.40 -0.02 16 39 H 0.08 2.23 6.07 -51.93 -0.32 1.92 16 40 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.08 2.23 6.07 -51.93 -0.32 1.91 16 43 H 0.02 0.38 7.68 -51.93 -0.40 -0.01 16 44 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 338.36 15.07 5.10 5.10 Total: -1.00 -28.48 338.36 -7.52 -35.99 By element: Atomic # 1 Polarization: 7.18 SS G_CDS: -7.56 Total: -0.38 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: 0.04 Total: -14.99 kcal Atomic # 7 Polarization: -24.23 SS G_CDS: 0.52 Total: -23.71 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.59 Total: -18.01 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.48 -7.52 -35.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184694706.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.372 kcal (2) G-P(sol) polarization free energy of solvation -28.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds