Wall clock time and date at job start Mon Mar 30 2020 08:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47646 * 2 1 4 4 C 1.53002 * 109.46918 * 120.00292 * 2 1 3 5 5 C 1.52994 * 115.56322 * 34.30434 * 4 2 1 6 6 C 1.53078 * 117.48979 * 248.59883 * 4 2 1 7 7 C 1.52999 * 59.98494 * 252.51195 * 6 4 2 8 8 H 1.09000 * 117.49873 * 107.50115 * 7 6 4 9 9 C 1.50703 * 117.50181 * 252.50081 * 7 6 4 10 10 O 1.20821 * 119.99879 * 68.74617 * 9 7 6 11 11 O 1.34222 * 119.99985 * 248.74354 * 9 7 6 12 12 C 1.45200 * 117.00094 * 179.97438 * 11 9 7 13 13 C 1.53006 * 109.47003 * 180.02562 * 12 11 9 14 14 C 1.52997 * 109.47127 * 299.99754 * 13 12 11 15 15 C 1.52997 * 109.47164 * 59.99917 * 13 12 11 16 16 C 1.50699 * 109.46866 * 179.97438 * 13 12 11 17 17 H 1.08003 * 119.99963 * 359.97438 * 16 13 12 18 18 C 1.37874 * 120.00270 * 179.97438 * 16 13 12 19 19 N 1.31522 * 119.99835 * 0.02562 * 18 16 13 20 20 Si 1.86793 * 120.00496 * 179.97438 * 18 16 13 21 21 H 1.48505 * 109.47183 * 60.00274 * 20 18 16 22 22 H 1.48496 * 109.47425 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47216 * 300.00267 * 20 18 16 24 24 H 1.08998 * 109.47840 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47099 * 300.00089 * 1 2 3 26 26 H 1.09002 * 109.47068 * 59.99705 * 1 2 3 27 27 H 1.09002 * 109.47099 * 239.99911 * 2 1 3 28 28 H 1.08993 * 109.47370 * 180.02562 * 3 2 1 29 29 H 1.09002 * 109.47128 * 300.00258 * 3 2 1 30 30 H 1.09002 * 109.46944 * 59.99816 * 3 2 1 31 31 H 1.08998 * 109.47323 * 205.69032 * 5 4 2 32 32 H 1.08994 * 109.47181 * 325.69595 * 5 4 2 33 33 H 1.09004 * 109.46941 * 85.69536 * 5 4 2 34 34 H 1.09000 * 117.50776 * 145.03781 * 6 4 2 35 35 H 1.08999 * 117.49541 * 359.97438 * 6 4 2 36 36 H 1.08993 * 109.47475 * 60.00347 * 12 11 9 37 37 H 1.09000 * 109.47147 * 300.00141 * 12 11 9 38 38 H 1.09001 * 109.46832 * 60.00321 * 14 13 12 39 39 H 1.09002 * 109.47153 * 180.02562 * 14 13 12 40 40 H 1.08996 * 109.46952 * 300.00302 * 14 13 12 41 41 H 1.09000 * 109.47140 * 60.00051 * 15 13 12 42 42 H 1.09001 * 109.47230 * 179.97438 * 15 13 12 43 43 H 1.09001 * 109.47375 * 300.00034 * 15 13 12 44 44 H 0.96992 * 120.00038 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.1850 -1.8962 1.7284 6 6 2.7426 0.1230 2.3153 7 6 3.5549 -0.8282 1.4344 8 1 4.1883 -0.3850 0.6659 9 6 4.0909 -2.0828 2.0746 10 8 3.3316 -2.9573 2.4185 11 8 5.4119 -2.2286 2.2627 12 6 5.8568 -3.4624 2.8856 13 6 7.3812 -3.4468 3.0165 14 6 8.0111 -3.3205 1.6279 15 6 7.8068 -2.2574 3.8796 16 6 7.8429 -4.7271 3.6635 17 1 7.1212 -5.4767 3.9528 18 6 9.1865 -4.9415 3.8862 19 7 10.0653 -4.0284 3.5344 20 14 9.7588 -6.5281 4.6889 21 1 9.3451 -7.6833 3.8524 22 1 11.2383 -6.5131 4.8159 23 1 9.1480 -6.6492 6.0370 24 1 -0.3635 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.3349 -2.0422 2.7981 32 1 0.1338 -1.6835 1.5345 33 1 1.4775 -2.8001 1.1939 34 1 2.5958 -0.1587 3.3580 35 1 2.8416 1.1919 2.1261 36 1 5.5533 -4.3098 2.2709 37 1 5.4084 -3.5522 3.8750 38 1 7.6770 -2.3942 1.1604 39 1 9.0970 -3.3098 1.7211 40 1 7.7078 -4.1678 1.0130 41 1 7.3580 -2.3474 4.8689 42 1 8.8927 -2.2465 3.9733 43 1 7.4727 -1.3311 3.4121 44 1 11.0106 -4.1794 3.6907 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184694706.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:25 Heat of formation + Delta-G solvation = -93.964988 kcal Electronic energy + Delta-G solvation = -21294.344368 eV Core-core repulsion = 18211.680493 eV Total energy + Delta-G solvation = -3082.663875 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.81777 -39.85839 -38.05504 -36.58292 -34.07675 -33.27145 -30.29688 -28.09562 -27.60186 -27.34012 -26.96680 -25.15731 -23.91183 -21.53529 -20.73083 -19.24428 -18.76046 -17.82709 -17.38290 -17.13999 -16.71567 -16.34556 -15.38734 -15.02041 -14.85796 -14.78219 -14.29441 -14.02103 -13.74062 -13.57052 -13.38516 -13.29490 -13.10333 -12.83083 -12.71985 -12.58436 -12.52157 -12.35001 -12.27967 -12.14846 -11.99355 -11.73312 -11.57069 -11.38524 -11.29254 -11.10882 -11.02103 -10.76698 -10.59181 -10.42081 -8.06202 -6.24912 1.13802 1.43404 1.43757 1.51095 1.77830 2.44032 2.69163 3.16886 3.56272 3.64269 3.75894 3.92540 4.07397 4.24110 4.26177 4.27332 4.42214 4.58122 4.65368 4.72094 4.81864 4.83370 4.89317 4.95411 4.97657 5.01969 5.04479 5.11668 5.17577 5.18884 5.19962 5.24676 5.34077 5.43717 5.51393 5.54960 5.60219 5.61004 5.70870 6.04738 6.15265 6.34876 6.77006 6.86000 7.43141 8.93428 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.042729 B = 0.003739 C = 0.003591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.132186 B = 7487.487561 C = 7795.924935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.059 4.059 3 C -0.153 4.153 4 C -0.078 4.078 5 C -0.110 4.110 6 C -0.133 4.133 7 C -0.178 4.178 8 H 0.146 0.854 9 C 0.475 3.525 10 O -0.537 6.537 11 O -0.353 6.353 12 C 0.098 3.902 13 C 0.061 3.939 14 C -0.118 4.118 15 C -0.117 4.117 16 C -0.537 4.537 17 H 0.048 0.952 18 C 0.028 3.972 19 N -0.900 5.900 20 Si 0.954 3.046 21 H -0.274 1.274 22 H -0.280 1.280 23 H -0.274 1.274 24 H 0.057 0.943 25 H 0.061 0.939 26 H 0.068 0.932 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.043 0.957 32 H 0.083 0.917 33 H 0.044 0.956 34 H 0.090 0.910 35 H 0.142 0.858 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.031 0.969 39 H 0.064 0.936 40 H 0.018 0.982 41 H 0.019 0.981 42 H 0.064 0.936 43 H 0.031 0.969 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.988 11.501 -6.615 20.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.077 4.077 3 C -0.209 4.209 4 C -0.078 4.078 5 C -0.166 4.166 6 C -0.169 4.169 7 C -0.197 4.197 8 H 0.164 0.836 9 C 0.321 3.679 10 O -0.428 6.428 11 O -0.269 6.269 12 C 0.025 3.975 13 C 0.061 3.939 14 C -0.175 4.175 15 C -0.175 4.175 16 C -0.575 4.575 17 H 0.067 0.933 18 C -0.172 4.172 19 N -0.538 5.538 20 Si 0.779 3.221 21 H -0.200 1.200 22 H -0.205 1.205 23 H -0.200 1.200 24 H 0.076 0.924 25 H 0.081 0.919 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.063 0.937 34 H 0.109 0.891 35 H 0.160 0.840 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.050 0.950 39 H 0.083 0.917 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.083 0.917 43 H 0.050 0.950 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.965 11.252 -6.492 20.583 hybrid contribution 0.756 -1.460 0.667 1.774 sum -15.209 9.792 -5.825 19.003 Atomic orbital electron populations 1.21890 0.93548 1.02151 1.02609 1.20663 0.96837 0.96034 0.94153 1.22008 1.01228 0.94744 1.02967 1.21870 0.88583 0.98769 0.98584 1.21460 0.99377 0.95461 1.00343 1.23530 0.98891 0.98553 0.95971 1.22031 0.96845 0.95128 1.05712 0.83630 1.23447 0.80576 0.88558 0.75341 1.90606 1.58689 1.44144 1.49395 1.86503 1.25199 1.42654 1.72588 1.23211 0.97330 0.81996 0.94975 1.18262 0.86610 0.94964 0.94090 1.21611 1.02756 0.97140 0.96020 1.21607 1.02616 0.96135 0.97126 1.21181 0.92728 1.02650 1.40971 0.93331 1.25524 0.96533 0.99444 0.95680 1.69932 1.01878 1.34718 1.47239 0.85688 0.77176 0.80192 0.79012 1.19983 1.20534 1.19977 0.92420 0.91944 0.91305 0.90898 0.92499 0.91267 0.91270 0.93814 0.89875 0.93686 0.89150 0.84048 0.93546 0.93518 0.95022 0.91706 0.96235 0.96222 0.91719 0.95016 0.92749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.83 8.20 71.98 0.59 -1.24 16 2 C -0.06 -0.90 3.15 -10.79 -0.03 -0.93 16 3 C -0.15 -1.83 7.79 71.98 0.56 -1.27 16 4 C -0.08 -1.64 2.47 -52.16 -0.13 -1.77 16 5 C -0.11 -2.67 7.74 71.98 0.56 -2.11 16 6 C -0.13 -2.70 8.92 30.62 0.27 -2.42 16 7 C -0.18 -4.62 5.66 -11.54 -0.07 -4.69 16 8 H 0.15 3.30 7.61 -2.39 -0.02 3.28 16 9 C 0.48 17.33 7.72 71.24 0.55 17.88 16 10 O -0.54 -21.76 12.86 21.98 0.28 -21.48 16 11 O -0.35 -14.65 8.88 -51.34 -0.46 -15.11 16 12 C 0.10 4.56 4.26 71.98 0.31 4.86 16 13 C 0.06 3.08 0.58 -52.93 -0.03 3.05 16 14 C -0.12 -5.80 8.11 71.98 0.58 -5.22 16 15 C -0.12 -5.78 8.11 71.98 0.58 -5.19 16 16 C -0.54 -29.51 8.01 25.60 0.21 -29.31 16 17 H 0.05 2.67 7.74 -2.91 -0.02 2.64 16 18 C 0.03 1.53 5.15 84.65 0.44 1.97 16 19 N -0.90 -49.59 9.35 21.45 0.20 -49.39 16 20 Si 0.95 43.08 29.54 68.60 2.03 45.11 16 21 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 22 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 23 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 24 H 0.06 0.78 6.45 -2.39 -0.02 0.76 16 25 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.07 0.69 8.14 -2.39 -0.02 0.68 16 27 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 28 H 0.06 0.72 7.07 -2.39 -0.02 0.70 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 0.73 6.98 -2.39 -0.02 0.71 16 31 H 0.04 1.23 7.02 -2.39 -0.02 1.21 16 32 H 0.08 1.56 5.58 -2.39 -0.01 1.55 16 33 H 0.04 1.29 7.26 -2.39 -0.02 1.27 16 34 H 0.09 2.03 8.05 -2.39 -0.02 2.01 16 35 H 0.14 2.04 5.85 -2.39 -0.01 2.03 16 36 H 0.05 2.19 8.13 -2.39 -0.02 2.17 16 37 H 0.05 2.20 8.13 -2.39 -0.02 2.18 16 38 H 0.03 1.41 7.68 -2.39 -0.02 1.40 16 39 H 0.06 3.45 6.07 -2.39 -0.01 3.44 16 40 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.06 3.44 6.07 -2.39 -0.01 3.43 16 43 H 0.03 1.42 7.68 -2.39 -0.02 1.40 16 44 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 Total: -1.00 -60.99 338.36 7.40 -53.59 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 0.96 Total: 13.67 kcal Atomic # 6 Polarization: -30.78 SS G_CDS: 4.39 Total: -26.39 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: 0.20 Total: -49.39 kcal Atomic # 8 Polarization: -36.41 SS G_CDS: -0.17 Total: -36.59 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -60.99 7.40 -53.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184694706.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.372 kcal (2) G-P(sol) polarization free energy of solvation -60.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.593 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds