Wall clock time and date at job start Mon Mar 30 2020 08:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46979 * 2 1 4 4 C 1.53003 * 109.47084 * 119.99471 * 2 1 3 5 5 C 1.52999 * 115.55052 * 207.70789 * 4 2 1 6 6 C 1.53073 * 117.51183 * 353.43031 * 4 2 1 7 7 C 1.53005 * 59.98597 * 107.47607 * 6 4 2 8 8 H 1.08994 * 117.49852 * 107.49459 * 7 6 4 9 9 C 1.50700 * 117.50214 * 252.50152 * 7 6 4 10 10 O 1.20826 * 119.99947 * 94.75766 * 9 7 6 11 11 O 1.34224 * 119.99600 * 274.76309 * 9 7 6 12 12 C 1.45207 * 116.99831 * 179.97438 * 11 9 7 13 13 C 1.53003 * 109.47123 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.47237 * 300.00449 * 13 12 11 15 15 C 1.52998 * 109.46733 * 60.00112 * 13 12 11 16 16 C 1.50698 * 109.46869 * 180.02562 * 13 12 11 17 17 H 1.07995 * 120.00161 * 0.61800 * 16 13 12 18 18 C 1.37874 * 119.99581 * 180.61498 * 16 13 12 19 19 N 1.31519 * 119.99733 * 193.39003 * 18 16 13 20 20 Si 1.86800 * 120.00437 * 13.38812 * 18 16 13 21 21 H 1.48497 * 109.47166 * 84.44622 * 20 18 16 22 22 H 1.48503 * 109.47449 * 204.45159 * 20 18 16 23 23 H 1.48507 * 109.47073 * 324.44813 * 20 18 16 24 24 H 1.09001 * 109.46918 * 306.40320 * 1 2 3 25 25 H 1.08999 * 109.46791 * 66.40660 * 1 2 3 26 26 H 1.08998 * 109.46696 * 186.40228 * 1 2 3 27 27 H 1.08998 * 109.47350 * 239.99852 * 2 1 3 28 28 H 1.09001 * 109.47253 * 186.72769 * 3 2 1 29 29 H 1.09003 * 109.47114 * 306.71934 * 3 2 1 30 30 H 1.08996 * 109.47641 * 66.72461 * 3 2 1 31 31 H 1.09000 * 109.47140 * 274.33351 * 5 4 2 32 32 H 1.09001 * 109.47025 * 34.33406 * 5 4 2 33 33 H 1.09004 * 109.47268 * 154.33276 * 5 4 2 34 34 H 1.08996 * 117.51379 * 0.02562 * 6 4 2 35 35 H 1.09003 * 117.49400 * 214.95700 * 6 4 2 36 36 H 1.08992 * 109.47384 * 299.99835 * 12 11 9 37 37 H 1.09000 * 109.46985 * 60.00037 * 12 11 9 38 38 H 1.09002 * 109.47493 * 64.19138 * 14 13 12 39 39 H 1.09002 * 109.47002 * 184.19310 * 14 13 12 40 40 H 1.09005 * 109.46977 * 304.19278 * 14 13 12 41 41 H 1.09005 * 109.47363 * 60.00093 * 15 13 12 42 42 H 1.09007 * 109.47093 * 179.97438 * 15 13 12 43 43 H 1.09002 * 109.47766 * 299.99685 * 15 13 12 44 44 H 0.97006 * 119.99487 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.4122 -0.2727 1.7562 6 6 1.0042 -1.1446 2.2937 7 6 1.6755 -2.1984 1.4106 8 1 2.4133 -2.8506 1.8778 9 6 0.8418 -2.8317 0.3267 10 8 0.8727 -2.3875 -0.7965 11 8 0.0648 -3.8891 0.6092 12 6 -0.7114 -4.4474 -0.4836 13 6 -1.5278 -5.6368 0.0262 14 6 -0.5822 -6.7054 0.5783 15 6 -2.4720 -5.1690 1.1356 16 6 -2.3329 -6.2166 -1.1081 17 1 -2.2611 -5.7867 -2.0962 18 6 -3.1611 -7.2959 -0.8843 19 7 -3.6568 -7.9663 -1.9014 20 14 -3.5790 -7.8061 0.8634 21 1 -4.7205 -6.9943 1.3565 22 1 -3.9487 -9.2443 0.8843 23 1 -2.3999 -7.5855 1.7389 24 1 -0.3633 0.6099 0.8271 25 1 -0.3633 0.4113 -0.9418 26 1 -0.3633 -1.0213 0.1146 27 1 1.8934 -0.5138 -0.8899 28 1 3.1233 1.4449 -0.1204 29 1 1.5818 1.9899 -0.8238 30 1 1.7783 1.9205 0.9440 31 1 4.1919 -0.8210 1.2275 32 1 3.5342 0.7956 1.5773 33 1 3.4880 -0.4730 2.8250 34 1 -0.0407 -0.9099 2.0906 35 1 1.3005 -1.1036 3.3419 36 1 -1.3848 -3.6861 -0.8771 37 1 -0.0387 -4.7810 -1.2738 38 1 -0.0534 -6.3097 1.4455 39 1 -1.1579 -7.5828 0.8729 40 1 0.1385 -6.9849 -0.1902 41 1 -3.1457 -4.4077 0.7423 42 1 -3.0540 -6.0162 1.4986 43 1 -1.8894 -4.7499 1.9560 44 1 -4.2392 -8.7259 -1.7439 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184694727.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:29 Heat of formation + Delta-G solvation = -56.185827 kcal Electronic energy + Delta-G solvation = -21766.048310 eV Core-core repulsion = 18685.022663 eV Total energy + Delta-G solvation = -3081.025648 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.76829 -38.59707 -36.55647 -35.00894 -33.29004 -31.71899 -29.58931 -26.96620 -26.29863 -26.15126 -24.98653 -23.99969 -22.96817 -20.34748 -19.14524 -18.36185 -17.42287 -16.30526 -15.95657 -15.93552 -15.26361 -14.68021 -14.54302 -14.31893 -13.50106 -13.21915 -13.12207 -12.95208 -12.79026 -12.54316 -12.31307 -12.08190 -11.95896 -11.88773 -11.78714 -11.59028 -11.14907 -10.94186 -10.81658 -10.51581 -10.33611 -10.27016 -10.22052 -10.02745 -10.00304 -9.69975 -9.52145 -9.08361 -8.62307 -8.45500 -6.15747 -4.14191 2.49381 3.03253 3.26811 3.35268 3.40429 3.58791 4.36813 4.44846 4.58888 4.68174 4.79914 5.11121 5.16316 5.22194 5.30590 5.41958 5.54685 5.58554 5.59416 5.63289 5.79635 5.81319 5.84293 5.87953 5.91524 5.94777 5.96769 6.15201 6.23939 6.27613 6.37644 6.45686 6.54597 6.59797 6.71971 6.79046 6.89995 7.09666 7.23545 7.45518 7.71040 8.22395 8.42218 8.86499 9.47802 10.97059 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.037274 B = 0.004427 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.021236 B = 6323.254474 C = 6545.789132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.061 4.061 3 C -0.145 4.145 4 C -0.088 4.088 5 C -0.121 4.121 6 C -0.153 4.153 7 C -0.159 4.159 8 H 0.134 0.866 9 C 0.485 3.515 10 O -0.504 6.504 11 O -0.351 6.351 12 C 0.094 3.906 13 C 0.043 3.957 14 C -0.145 4.145 15 C -0.144 4.144 16 C -0.518 4.518 17 H 0.075 0.925 18 C 0.078 3.922 19 N -0.891 5.891 20 Si 0.880 3.120 21 H -0.285 1.285 22 H -0.304 1.304 23 H -0.241 1.241 24 H 0.048 0.952 25 H 0.054 0.946 26 H 0.058 0.942 27 H 0.094 0.906 28 H 0.055 0.945 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.032 0.968 39 H 0.057 0.943 40 H 0.044 0.956 41 H 0.048 0.952 42 H 0.039 0.961 43 H 0.040 0.960 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.712 15.221 9.384 21.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.080 4.080 3 C -0.202 4.202 4 C -0.089 4.089 5 C -0.178 4.178 6 C -0.190 4.190 7 C -0.178 4.178 8 H 0.152 0.848 9 C 0.328 3.672 10 O -0.394 6.394 11 O -0.267 6.267 12 C 0.021 3.979 13 C 0.042 3.958 14 C -0.202 4.202 15 C -0.201 4.201 16 C -0.556 4.556 17 H 0.093 0.907 18 C -0.124 4.124 19 N -0.528 5.528 20 Si 0.713 3.287 21 H -0.212 1.212 22 H -0.233 1.233 23 H -0.167 1.167 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.112 0.888 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.077 0.923 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.051 0.949 39 H 0.076 0.924 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.567 15.162 8.950 21.067 hybrid contribution -0.501 -0.550 0.690 1.015 sum 11.066 14.612 9.640 20.710 Atomic orbital electron populations 1.22053 0.95211 1.02034 1.01160 1.20689 0.95728 0.94943 0.96601 1.21910 1.00708 0.96098 1.01468 1.21727 0.96612 0.92607 0.97912 1.21495 0.93682 1.02144 1.00478 1.23425 0.99396 0.99710 0.96430 1.21880 1.02763 0.92830 1.00347 0.84843 1.22426 0.78026 0.78478 0.88268 1.90627 1.63650 1.61627 1.23452 1.86495 1.53571 1.42959 1.43678 1.23380 0.92422 0.95765 0.86344 1.18580 0.92167 0.90100 0.94954 1.22312 0.99235 0.99855 0.98833 1.22239 0.99436 0.99853 0.98557 1.20670 1.25096 1.14807 0.94983 0.90671 1.24908 0.95475 0.95084 0.96967 1.69945 1.33021 1.19093 1.30706 0.87397 0.79248 0.75792 0.86285 1.21227 1.23271 1.16749 0.93287 0.92677 0.92280 0.88804 0.92582 0.92757 0.92811 0.91941 0.90894 0.92298 0.87504 0.87770 0.91927 0.91773 0.94897 0.92403 0.93708 0.93265 0.94276 0.94099 0.92477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 7.10 37.16 0.26 -1.62 16 2 C -0.06 -0.72 2.36 -90.62 -0.21 -0.93 16 3 C -0.14 -1.32 7.88 37.16 0.29 -1.03 16 4 C -0.09 -0.94 2.48 -154.47 -0.38 -1.33 16 5 C -0.12 -0.98 9.48 37.16 0.35 -0.63 16 6 C -0.15 -1.61 9.02 -26.69 -0.24 -1.85 16 7 C -0.16 -2.00 6.01 -91.77 -0.55 -2.55 16 8 H 0.13 1.45 8.14 -51.93 -0.42 1.03 16 9 C 0.48 8.09 5.94 36.01 0.21 8.30 16 10 O -0.50 -9.32 12.28 -18.75 -0.23 -9.55 16 11 O -0.35 -6.58 8.96 -39.24 -0.35 -6.93 16 12 C 0.09 1.98 4.26 37.16 0.16 2.14 16 13 C 0.04 1.00 0.58 -155.66 -0.09 0.91 16 14 C -0.15 -3.20 7.71 37.16 0.29 -2.91 16 15 C -0.14 -3.14 7.62 37.16 0.28 -2.86 16 16 C -0.52 -14.27 8.62 -34.44 -0.30 -14.57 16 17 H 0.08 2.25 7.99 -52.49 -0.42 1.83 16 18 C 0.08 2.22 5.35 -17.82 -0.10 2.13 16 19 N -0.89 -26.90 13.96 55.43 0.77 -26.13 16 20 Si 0.88 21.47 22.84 -169.99 -3.88 17.59 16 21 H -0.28 -6.89 7.09 56.52 0.40 -6.49 16 22 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 23 H -0.24 -5.45 4.53 56.52 0.26 -5.19 16 24 H 0.05 0.54 7.51 -51.93 -0.39 0.15 16 25 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.89 4.31 -51.93 -0.22 0.67 16 27 H 0.09 1.32 6.66 -51.93 -0.35 0.98 16 28 H 0.06 0.45 6.97 -51.93 -0.36 0.09 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.05 0.45 8.03 -51.93 -0.42 0.03 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.52 5.68 -51.93 -0.30 0.23 16 33 H 0.06 0.41 7.90 -51.93 -0.41 0.00 16 34 H 0.11 1.21 5.87 -51.93 -0.30 0.90 16 35 H 0.10 0.87 8.05 -51.93 -0.42 0.45 16 36 H 0.06 1.34 8.13 -51.93 -0.42 0.92 16 37 H 0.06 1.39 8.13 -51.93 -0.42 0.97 16 38 H 0.03 0.65 7.81 -51.93 -0.41 0.24 16 39 H 0.06 1.32 3.95 -51.93 -0.21 1.11 16 40 H 0.04 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.04 0.88 2.38 -51.93 -0.12 0.76 16 43 H 0.04 0.80 7.68 -51.93 -0.40 0.40 16 44 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 325.39 15.07 4.90 4.90 Total: -1.00 -29.99 325.39 -6.19 -36.18 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -7.38 Total: 0.75 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: -0.02 Total: -16.81 kcal Atomic # 7 Polarization: -26.90 SS G_CDS: 0.77 Total: -26.13 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.58 Total: -16.49 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -3.88 Total: 17.59 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.99 -6.19 -36.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184694727.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.007 kcal (2) G-P(sol) polarization free energy of solvation -29.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds