Wall clock time and date at job start Mon Mar 30 2020 08:00:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.46979 * 2 1 4 4 C 1.53003 * 109.47084 * 119.99471 * 2 1 3 5 5 C 1.52999 * 115.55052 * 207.70789 * 4 2 1 6 6 C 1.53073 * 117.51183 * 353.43031 * 4 2 1 7 7 C 1.53005 * 59.98597 * 107.47607 * 6 4 2 8 8 H 1.08994 * 117.49852 * 107.49459 * 7 6 4 9 9 C 1.50700 * 117.50214 * 252.50152 * 7 6 4 10 10 O 1.20826 * 119.99947 * 94.75766 * 9 7 6 11 11 O 1.34224 * 119.99600 * 274.76309 * 9 7 6 12 12 C 1.45207 * 116.99831 * 179.97438 * 11 9 7 13 13 C 1.53003 * 109.47123 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.47237 * 300.00449 * 13 12 11 15 15 C 1.52998 * 109.46733 * 60.00112 * 13 12 11 16 16 C 1.50698 * 109.46869 * 180.02562 * 13 12 11 17 17 H 1.07995 * 120.00161 * 0.61800 * 16 13 12 18 18 C 1.37874 * 119.99581 * 180.61498 * 16 13 12 19 19 N 1.31519 * 119.99733 * 193.39003 * 18 16 13 20 20 Si 1.86800 * 120.00437 * 13.38812 * 18 16 13 21 21 H 1.48497 * 109.47166 * 84.44622 * 20 18 16 22 22 H 1.48503 * 109.47449 * 204.45159 * 20 18 16 23 23 H 1.48507 * 109.47073 * 324.44813 * 20 18 16 24 24 H 1.09001 * 109.46918 * 306.40320 * 1 2 3 25 25 H 1.08999 * 109.46791 * 66.40660 * 1 2 3 26 26 H 1.08998 * 109.46696 * 186.40228 * 1 2 3 27 27 H 1.08998 * 109.47350 * 239.99852 * 2 1 3 28 28 H 1.09001 * 109.47253 * 186.72769 * 3 2 1 29 29 H 1.09003 * 109.47114 * 306.71934 * 3 2 1 30 30 H 1.08996 * 109.47641 * 66.72461 * 3 2 1 31 31 H 1.09000 * 109.47140 * 274.33351 * 5 4 2 32 32 H 1.09001 * 109.47025 * 34.33406 * 5 4 2 33 33 H 1.09004 * 109.47268 * 154.33276 * 5 4 2 34 34 H 1.08996 * 117.51379 * 0.02562 * 6 4 2 35 35 H 1.09003 * 117.49400 * 214.95700 * 6 4 2 36 36 H 1.08992 * 109.47384 * 299.99835 * 12 11 9 37 37 H 1.09000 * 109.46985 * 60.00037 * 12 11 9 38 38 H 1.09002 * 109.47493 * 64.19138 * 14 13 12 39 39 H 1.09002 * 109.47002 * 184.19310 * 14 13 12 40 40 H 1.09005 * 109.46977 * 304.19278 * 14 13 12 41 41 H 1.09005 * 109.47363 * 60.00093 * 15 13 12 42 42 H 1.09007 * 109.47093 * 179.97438 * 15 13 12 43 43 H 1.09002 * 109.47766 * 299.99685 * 15 13 12 44 44 H 0.97006 * 119.99487 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.4122 -0.2727 1.7562 6 6 1.0042 -1.1446 2.2937 7 6 1.6755 -2.1984 1.4106 8 1 2.4133 -2.8506 1.8778 9 6 0.8418 -2.8317 0.3267 10 8 0.8727 -2.3875 -0.7965 11 8 0.0648 -3.8891 0.6092 12 6 -0.7114 -4.4474 -0.4836 13 6 -1.5278 -5.6368 0.0262 14 6 -0.5822 -6.7054 0.5783 15 6 -2.4720 -5.1690 1.1356 16 6 -2.3329 -6.2166 -1.1081 17 1 -2.2611 -5.7867 -2.0962 18 6 -3.1611 -7.2959 -0.8843 19 7 -3.6568 -7.9663 -1.9014 20 14 -3.5790 -7.8061 0.8634 21 1 -4.7205 -6.9943 1.3565 22 1 -3.9487 -9.2443 0.8843 23 1 -2.3999 -7.5855 1.7389 24 1 -0.3633 0.6099 0.8271 25 1 -0.3633 0.4113 -0.9418 26 1 -0.3633 -1.0213 0.1146 27 1 1.8934 -0.5138 -0.8899 28 1 3.1233 1.4449 -0.1204 29 1 1.5818 1.9899 -0.8238 30 1 1.7783 1.9205 0.9440 31 1 4.1919 -0.8210 1.2275 32 1 3.5342 0.7956 1.5773 33 1 3.4880 -0.4730 2.8250 34 1 -0.0407 -0.9099 2.0906 35 1 1.3005 -1.1036 3.3419 36 1 -1.3848 -3.6861 -0.8771 37 1 -0.0387 -4.7810 -1.2738 38 1 -0.0534 -6.3097 1.4455 39 1 -1.1579 -7.5828 0.8729 40 1 0.1385 -6.9849 -0.1902 41 1 -3.1457 -4.4077 0.7423 42 1 -3.0540 -6.0162 1.4986 43 1 -1.8894 -4.7499 1.9560 44 1 -4.2392 -8.7259 -1.7439 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184694727.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:28 Heat of formation + Delta-G solvation = -72.920156 kcal Electronic energy + Delta-G solvation = -21766.773965 eV Core-core repulsion = 18685.022663 eV Total energy + Delta-G solvation = -3081.751302 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.98705 -39.80892 -38.14729 -36.64571 -34.20880 -33.82800 -30.36985 -28.40662 -28.02179 -27.24454 -27.00021 -25.20831 -23.84760 -21.61922 -20.96690 -19.29636 -18.75044 -18.01543 -17.63928 -17.32449 -17.07867 -15.82329 -15.58652 -15.36061 -14.94712 -14.83038 -14.56734 -14.14916 -14.05601 -13.85685 -13.79208 -13.62214 -13.28987 -13.23427 -12.72605 -12.46829 -12.45110 -12.26506 -12.11459 -11.97393 -11.89667 -11.81681 -11.71040 -11.42127 -11.30275 -11.09571 -10.98872 -10.65414 -10.53548 -10.37075 -8.35262 -6.38432 1.20508 1.35059 1.36383 1.48884 1.72458 2.31621 2.67090 3.00975 3.55706 3.69568 3.76468 3.93067 4.02712 4.09151 4.12063 4.25951 4.37380 4.42372 4.57129 4.61712 4.74331 4.78245 4.80709 4.82616 4.84369 4.92564 4.95124 5.00898 5.03569 5.06386 5.07586 5.14223 5.20132 5.23676 5.35859 5.41811 5.44853 5.56540 5.63039 5.68081 5.72578 6.23100 6.64280 6.83323 7.27183 8.81501 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.037274 B = 0.004427 C = 0.004277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.021236 B = 6323.254474 C = 6545.789132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.065 4.065 3 C -0.139 4.139 4 C -0.083 4.083 5 C -0.118 4.118 6 C -0.138 4.138 7 C -0.176 4.176 8 H 0.156 0.844 9 C 0.480 3.520 10 O -0.529 6.529 11 O -0.350 6.350 12 C 0.107 3.893 13 C 0.038 3.962 14 C -0.141 4.141 15 C -0.141 4.141 16 C -0.524 4.524 17 H 0.030 0.970 18 C 0.023 3.977 19 N -0.942 5.942 20 Si 0.937 3.063 21 H -0.278 1.278 22 H -0.309 1.309 23 H -0.204 1.204 24 H 0.068 0.932 25 H 0.044 0.956 26 H 0.031 0.969 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.096 0.904 35 H 0.136 0.864 36 H 0.049 0.951 37 H 0.047 0.953 38 H 0.061 0.939 39 H 0.052 0.948 40 H 0.038 0.962 41 H 0.045 0.955 42 H 0.036 0.964 43 H 0.070 0.930 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.346 16.693 13.180 25.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.083 4.083 3 C -0.196 4.196 4 C -0.083 4.083 5 C -0.175 4.175 6 C -0.175 4.175 7 C -0.195 4.195 8 H 0.173 0.827 9 C 0.325 3.675 10 O -0.420 6.420 11 O -0.267 6.267 12 C 0.034 3.966 13 C 0.037 3.963 14 C -0.198 4.198 15 C -0.198 4.198 16 C -0.561 4.561 17 H 0.048 0.952 18 C -0.175 4.175 19 N -0.581 5.581 20 Si 0.766 3.234 21 H -0.205 1.205 22 H -0.238 1.238 23 H -0.129 1.129 24 H 0.087 0.913 25 H 0.063 0.937 26 H 0.050 0.950 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.115 0.885 35 H 0.154 0.846 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.064 0.936 42 H 0.054 0.946 43 H 0.088 0.912 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 13.229 16.665 12.756 24.808 hybrid contribution -0.977 -0.910 -0.644 1.482 sum 12.252 15.756 12.112 23.346 Atomic orbital electron populations 1.22030 0.96337 1.00497 1.01401 1.20653 0.94803 0.96668 0.96187 1.21864 1.01417 0.94066 1.02223 1.21872 0.98252 0.90742 0.97424 1.21536 0.91600 1.02810 1.01532 1.23566 0.98834 0.97283 0.97790 1.22057 1.03273 0.93956 1.00189 0.82695 1.23391 0.77448 0.77461 0.89245 1.90629 1.64331 1.61979 1.25011 1.86478 1.53885 1.44070 1.42220 1.22889 0.92076 0.95001 0.86680 1.18529 0.92594 0.91116 0.94071 1.22233 0.98842 0.99038 0.99728 1.22170 0.99236 0.99736 0.98616 1.20924 1.25715 1.14730 0.94770 0.95177 1.25770 0.95224 0.95089 1.01390 1.70089 1.34427 1.20149 1.33412 0.86462 0.80364 0.74997 0.81560 1.20528 1.23774 1.12861 0.91344 0.93715 0.95004 0.91907 0.91289 0.93038 0.91265 0.92002 0.89682 0.90374 0.88537 0.84596 0.93253 0.93435 0.91986 0.92915 0.94286 0.93566 0.94579 0.91151 0.92400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 7.10 71.98 0.51 -3.15 16 2 C -0.06 -1.45 2.36 -10.79 -0.03 -1.47 16 3 C -0.14 -2.21 7.88 71.98 0.57 -1.65 16 4 C -0.08 -1.54 2.48 -52.15 -0.13 -1.67 16 5 C -0.12 -1.45 9.48 71.98 0.68 -0.77 16 6 C -0.14 -2.42 9.02 30.62 0.28 -2.14 16 7 C -0.18 -3.98 6.01 -11.54 -0.07 -4.05 16 8 H 0.16 2.83 8.14 -2.39 -0.02 2.81 16 9 C 0.48 15.75 5.94 71.24 0.42 16.18 16 10 O -0.53 -20.12 12.28 21.96 0.27 -19.85 16 11 O -0.35 -12.79 8.96 -51.36 -0.46 -13.25 16 12 C 0.11 4.62 4.26 71.98 0.31 4.93 16 13 C 0.04 1.74 0.58 -52.93 -0.03 1.70 16 14 C -0.14 -5.95 7.71 71.98 0.56 -5.40 16 15 C -0.14 -5.83 7.62 71.98 0.55 -5.29 16 16 C -0.52 -29.82 8.62 25.60 0.22 -29.59 16 17 H 0.03 1.92 7.99 -2.91 -0.02 1.90 16 18 C 0.02 1.35 5.35 84.65 0.45 1.80 16 19 N -0.94 -58.91 13.96 21.45 0.30 -58.61 16 20 Si 0.94 43.62 22.84 68.60 1.57 45.19 16 21 H -0.28 -12.61 7.09 99.48 0.70 -11.91 16 22 H -0.31 -14.54 7.11 99.48 0.71 -13.84 16 23 H -0.20 -8.32 4.53 99.48 0.45 -7.87 16 24 H 0.07 1.41 7.51 -2.39 -0.02 1.39 16 25 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.03 0.96 4.31 -2.39 -0.01 0.95 16 27 H 0.06 1.80 6.66 -2.39 -0.02 1.78 16 28 H 0.07 0.93 6.97 -2.39 -0.02 0.91 16 29 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 0.91 8.03 -2.39 -0.02 0.89 16 31 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.08 0.86 5.68 -2.39 -0.01 0.85 16 33 H 0.08 0.69 7.90 -2.38 -0.02 0.67 16 34 H 0.10 1.93 5.87 -2.39 -0.01 1.91 16 35 H 0.14 1.55 8.05 -2.39 -0.02 1.53 16 36 H 0.05 2.21 8.13 -2.39 -0.02 2.19 16 37 H 0.05 2.16 8.13 -2.39 -0.02 2.14 16 38 H 0.06 2.24 7.81 -2.39 -0.02 2.23 16 39 H 0.05 2.26 3.95 -2.39 -0.01 2.25 16 40 H 0.04 1.65 8.14 -2.38 -0.02 1.63 16 41 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 42 H 0.04 1.51 2.38 -2.38 -0.01 1.51 16 43 H 0.07 2.49 7.68 -2.39 -0.02 2.48 16 44 H 0.27 15.66 8.31 -92.70 -0.77 14.89 16 Total: -1.00 -67.85 325.39 6.68 -61.17 By element: Atomic # 1 Polarization: 15.20 SS G_CDS: 0.72 Total: 15.92 kcal Atomic # 6 Polarization: -34.85 SS G_CDS: 4.29 Total: -30.56 kcal Atomic # 7 Polarization: -58.91 SS G_CDS: 0.30 Total: -58.61 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -0.19 Total: -33.10 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 1.57 Total: 45.19 kcal Total: -67.85 6.68 -61.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184694727.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.750 kcal (2) G-P(sol) polarization free energy of solvation -67.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds