Wall clock time and date at job start Mon Mar 30 2020 07:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50703 * 110.01826 * 59.29971 * 3 2 1 5 5 O 1.20822 * 120.00549 * 120.69840 * 4 3 2 6 6 O 1.34232 * 119.99549 * 300.70560 * 4 3 2 7 7 C 1.45205 * 116.99852 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47304 * 179.97438 * 7 6 4 9 9 C 1.53001 * 109.47311 * 300.00187 * 8 7 6 10 10 C 1.53002 * 109.46832 * 60.00184 * 8 7 6 11 11 C 1.50701 * 109.47407 * 179.97438 * 8 7 6 12 12 H 1.08004 * 119.99328 * 0.02562 * 11 8 7 13 13 C 1.37872 * 120.00175 * 179.97438 * 11 8 7 14 14 N 1.31509 * 119.99733 * 0.02562 * 13 11 8 15 15 Si 1.86799 * 119.99849 * 180.02562 * 13 11 8 16 16 H 1.48495 * 109.47355 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47010 * 120.00288 * 15 13 11 18 18 H 1.48504 * 109.47281 * 240.00285 * 15 13 11 19 19 C 1.54262 * 110.03237 * 297.90974 * 3 2 1 20 20 C 1.54966 * 104.16009 * 217.13133 * 19 3 2 21 21 C 1.54888 * 102.77914 * 37.89048 * 20 19 3 22 22 C 1.53875 * 110.03718 * 180.68905 * 3 2 1 23 23 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 27 27 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 28 28 H 1.08999 * 109.46865 * 300.00179 * 7 6 4 29 29 H 1.09002 * 109.46997 * 59.99696 * 7 6 4 30 30 H 1.09000 * 109.46705 * 59.99468 * 9 8 7 31 31 H 1.08993 * 109.47195 * 179.97438 * 9 8 7 32 32 H 1.08998 * 109.46435 * 299.99953 * 9 8 7 33 33 H 1.08999 * 109.47624 * 59.99899 * 10 8 7 34 34 H 1.09004 * 109.46975 * 180.02562 * 10 8 7 35 35 H 1.09004 * 109.47236 * 299.99717 * 10 8 7 36 36 H 0.97008 * 119.99557 * 179.97438 * 14 13 11 37 37 H 1.08996 * 110.49185 * 335.78213 * 19 3 2 38 38 H 1.09000 * 110.48839 * 98.42731 * 19 3 2 39 39 H 1.09000 * 110.72573 * 279.57350 * 20 19 3 40 40 H 1.09006 * 110.76649 * 156.21974 * 20 19 3 41 41 H 1.08996 * 110.48859 * 203.40835 * 21 20 19 42 42 H 1.08995 * 110.48921 * 80.75679 * 21 20 19 43 43 H 1.09002 * 110.03591 * 238.57272 * 22 3 2 44 44 H 1.09002 * 110.02800 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5305 2.1698 1.2175 5 8 2.3108 2.6455 2.0078 6 8 0.2095 2.2890 1.4241 7 6 -0.2094 3.0017 2.6178 8 6 -1.7376 3.0356 2.6817 9 6 -2.2842 3.7491 1.4436 10 6 -2.2780 1.6049 2.7261 11 6 -2.1724 3.7748 3.9210 12 1 -1.4325 4.1803 4.5953 13 6 -3.5145 3.9344 4.1933 14 7 -4.4152 3.4411 3.3719 15 14 -4.0532 4.8513 5.7290 16 1 -2.8555 5.3044 6.4808 17 1 -4.8689 6.0301 5.3412 18 1 -4.8637 3.9488 6.5857 19 6 1.5766 2.1668 -1.2807 20 6 2.7747 3.0746 -1.6574 21 6 3.9976 2.1902 -1.3088 22 6 3.5786 1.4575 -0.0174 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 0.1804 2.4936 3.4999 29 1 0.1753 4.0211 2.5861 30 1 -1.9697 3.2141 0.5475 31 1 -3.3729 3.7729 1.4889 32 1 -1.8991 4.7683 1.4121 33 1 -1.8887 1.0965 3.6081 34 1 -3.3669 1.6290 2.7711 35 1 -1.9636 1.0698 1.8299 36 1 -5.3596 3.5531 3.5637 37 1 1.3785 1.4476 -2.0754 38 1 0.6900 2.7680 -1.0794 39 1 2.7727 3.9847 -1.0575 40 1 2.7604 3.3118 -2.7212 41 1 4.8767 2.8087 -1.1283 42 1 4.1910 1.4745 -2.1077 43 1 3.9567 1.9916 0.8544 44 1 3.9619 0.4372 -0.0263 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184763974.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:55 Heat of formation + Delta-G solvation = -118.833991 kcal Electronic energy + Delta-G solvation = -22223.220002 eV Core-core repulsion = 19139.477727 eV Total energy + Delta-G solvation = -3083.742276 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.61539 -38.00611 -36.36471 -34.85721 -33.13486 -31.23428 -28.84955 -28.00288 -25.82411 -25.60891 -25.08736 -22.70594 -22.37079 -20.74845 -19.02919 -18.79468 -16.72276 -16.25869 -16.08227 -15.73184 -14.99999 -14.80250 -14.50375 -13.73980 -13.34401 -13.26971 -12.85647 -12.83499 -12.71592 -12.09709 -11.80076 -11.56548 -11.36249 -11.19192 -11.16455 -11.09370 -11.00378 -10.79236 -10.67933 -10.64992 -10.50053 -10.38704 -10.36530 -10.15753 -9.85964 -9.77303 -9.36595 -9.26675 -8.73511 -8.37272 -6.01567 -4.12783 2.68395 3.25121 3.26828 3.35488 3.41051 4.38757 4.41335 4.53319 4.76495 5.10849 5.21519 5.24282 5.25043 5.39907 5.44956 5.58161 5.63180 5.71741 5.80517 5.84907 5.90967 6.01073 6.08148 6.13027 6.15101 6.18000 6.24778 6.31254 6.37271 6.49954 6.65550 6.84442 7.00109 7.11537 7.15796 7.23206 7.42297 7.63429 7.70893 8.06398 8.17294 8.32482 8.41734 8.87366 9.52775 10.99560 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.032881 B = 0.004836 C = 0.004664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.350382 B = 5788.876796 C = 6001.649805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.105 4.105 3 C -0.056 4.056 4 C 0.465 3.535 5 O -0.520 6.520 6 O -0.338 6.338 7 C 0.079 3.921 8 C 0.071 3.929 9 C -0.129 4.129 10 C -0.131 4.131 11 C -0.511 4.511 12 H 0.056 0.944 13 C 0.068 3.932 14 N -0.882 5.882 15 Si 0.894 3.106 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C -0.111 4.111 20 C -0.129 4.129 21 C -0.121 4.121 22 C -0.121 4.121 23 H 0.057 0.943 24 H 0.091 0.909 25 H 0.050 0.950 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.017 0.983 31 H 0.083 0.917 32 H 0.021 0.979 33 H 0.021 0.979 34 H 0.083 0.917 35 H 0.020 0.980 36 H 0.260 0.740 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.067 0.933 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.065 0.935 43 H 0.089 0.911 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.137 -5.342 -10.348 16.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.142 4.142 3 C -0.057 4.057 4 C 0.308 3.692 5 O -0.410 6.410 6 O -0.253 6.253 7 C 0.007 3.993 8 C 0.071 3.929 9 C -0.186 4.186 10 C -0.188 4.188 11 C -0.549 4.549 12 H 0.074 0.926 13 C -0.133 4.133 14 N -0.520 5.520 15 Si 0.722 3.278 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.148 4.148 20 C -0.166 4.166 21 C -0.158 4.158 22 C -0.158 4.158 23 H 0.076 0.924 24 H 0.109 0.891 25 H 0.069 0.931 26 H 0.081 0.919 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.036 0.964 31 H 0.102 0.898 32 H 0.041 0.959 33 H 0.041 0.959 34 H 0.102 0.898 35 H 0.039 0.961 36 H 0.070 0.930 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.107 0.893 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 11.117 -5.196 -10.092 15.888 hybrid contribution -0.244 0.588 1.067 1.243 sum 10.873 -4.608 -9.025 14.863 Atomic orbital electron populations 1.22182 0.94159 1.01662 1.04869 1.21579 0.97601 0.92821 1.02232 1.21225 0.96292 0.96059 0.92113 1.23417 0.81866 0.77328 0.86595 1.90570 1.57592 1.46324 1.46520 1.86597 1.23293 1.68865 1.46567 1.23670 0.99023 0.94067 0.82570 1.18220 0.85156 0.94285 0.95255 1.21759 1.04213 0.97148 0.95497 1.21819 1.04255 0.95982 0.96775 1.20984 0.91970 1.35377 1.06556 0.92557 1.24846 0.96486 0.95395 0.96607 1.69841 1.00842 1.45177 1.36148 0.86505 0.78668 0.79558 0.83092 1.19808 1.20978 1.20969 1.22486 0.98775 0.98565 0.94989 1.22570 0.94545 0.98415 1.01109 1.22330 0.98001 0.98442 0.97056 1.22335 0.92120 1.01509 0.99831 0.92415 0.89053 0.93106 0.91853 0.90962 0.92750 0.92773 0.96423 0.89804 0.95947 0.95940 0.89805 0.96128 0.93003 0.90212 0.90171 0.91424 0.91227 0.91573 0.91627 0.89266 0.91072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.33 9.17 37.16 0.34 -1.99 16 2 C -0.10 -1.27 4.61 -26.74 -0.12 -1.39 16 3 C -0.06 -0.75 0.65 -154.55 -0.10 -0.85 16 4 C 0.46 8.34 6.43 36.01 0.23 8.57 16 5 O -0.52 -10.66 14.96 -18.75 -0.28 -10.94 16 6 O -0.34 -6.59 5.65 -39.26 -0.22 -6.81 16 7 C 0.08 1.77 4.26 37.16 0.16 1.93 16 8 C 0.07 1.73 0.58 -155.66 -0.09 1.64 16 9 C -0.13 -3.07 8.11 37.16 0.30 -2.76 16 10 C -0.13 -3.10 8.11 37.16 0.30 -2.80 16 11 C -0.51 -13.66 8.01 -34.44 -0.28 -13.93 16 12 H 0.06 1.52 7.74 -52.48 -0.41 1.11 16 13 C 0.07 1.82 5.15 -17.82 -0.09 1.73 16 14 N -0.88 -23.86 9.35 55.43 0.52 -23.34 16 15 Si 0.89 20.87 29.54 -169.99 -5.02 15.85 16 16 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 C -0.11 -1.33 4.83 -25.03 -0.12 -1.45 16 20 C -0.13 -1.40 6.91 -24.70 -0.17 -1.57 16 21 C -0.12 -1.21 6.83 -25.07 -0.17 -1.38 16 22 C -0.12 -1.45 6.05 -25.61 -0.16 -1.61 16 23 H 0.06 0.75 7.22 -51.93 -0.38 0.37 16 24 H 0.09 1.52 3.67 -51.93 -0.19 1.33 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 28 H 0.05 1.23 8.13 -51.93 -0.42 0.81 16 29 H 0.05 1.23 8.13 -51.93 -0.42 0.81 16 30 H 0.02 0.37 7.68 -51.93 -0.40 -0.03 16 31 H 0.08 2.17 6.07 -51.93 -0.32 1.86 16 32 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 2.16 6.07 -51.93 -0.32 1.85 16 35 H 0.02 0.43 6.06 -51.93 -0.31 0.12 16 36 H 0.26 6.73 8.31 -40.82 -0.34 6.40 16 37 H 0.08 0.81 7.72 -51.93 -0.40 0.41 16 38 H 0.08 1.10 7.63 -51.93 -0.40 0.70 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 1.27 6.40 -51.93 -0.33 0.94 16 44 H 0.07 0.73 7.67 -51.93 -0.40 0.33 16 LS Contribution 332.31 15.07 5.01 5.01 Total: -1.00 -27.92 332.31 -7.59 -35.51 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -7.63 Total: 0.60 kcal Atomic # 6 Polarization: -15.91 SS G_CDS: 0.03 Total: -15.88 kcal Atomic # 7 Polarization: -23.86 SS G_CDS: 0.52 Total: -23.34 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.50 Total: -17.75 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.92 -7.59 -35.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184763974.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.327 kcal (2) G-P(sol) polarization free energy of solvation -27.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds