Wall clock time and date at job start Mon Mar 30 2020 07:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50703 * 110.01826 * 59.29971 * 3 2 1 5 5 O 1.20822 * 120.00549 * 120.69840 * 4 3 2 6 6 O 1.34232 * 119.99549 * 300.70560 * 4 3 2 7 7 C 1.45205 * 116.99852 * 179.97438 * 6 4 3 8 8 C 1.52997 * 109.47304 * 179.97438 * 7 6 4 9 9 C 1.53001 * 109.47311 * 300.00187 * 8 7 6 10 10 C 1.53002 * 109.46832 * 60.00184 * 8 7 6 11 11 C 1.50701 * 109.47407 * 179.97438 * 8 7 6 12 12 H 1.08004 * 119.99328 * 0.02562 * 11 8 7 13 13 C 1.37872 * 120.00175 * 179.97438 * 11 8 7 14 14 N 1.31509 * 119.99733 * 0.02562 * 13 11 8 15 15 Si 1.86799 * 119.99849 * 180.02562 * 13 11 8 16 16 H 1.48495 * 109.47355 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47010 * 120.00288 * 15 13 11 18 18 H 1.48504 * 109.47281 * 240.00285 * 15 13 11 19 19 C 1.54262 * 110.03237 * 297.90974 * 3 2 1 20 20 C 1.54966 * 104.16009 * 217.13133 * 19 3 2 21 21 C 1.54888 * 102.77914 * 37.89048 * 20 19 3 22 22 C 1.53875 * 110.03718 * 180.68905 * 3 2 1 23 23 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 24 24 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 25 25 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 27 27 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 28 28 H 1.08999 * 109.46865 * 300.00179 * 7 6 4 29 29 H 1.09002 * 109.46997 * 59.99696 * 7 6 4 30 30 H 1.09000 * 109.46705 * 59.99468 * 9 8 7 31 31 H 1.08993 * 109.47195 * 179.97438 * 9 8 7 32 32 H 1.08998 * 109.46435 * 299.99953 * 9 8 7 33 33 H 1.08999 * 109.47624 * 59.99899 * 10 8 7 34 34 H 1.09004 * 109.46975 * 180.02562 * 10 8 7 35 35 H 1.09004 * 109.47236 * 299.99717 * 10 8 7 36 36 H 0.97008 * 119.99557 * 179.97438 * 14 13 11 37 37 H 1.08996 * 110.49185 * 335.78213 * 19 3 2 38 38 H 1.09000 * 110.48839 * 98.42731 * 19 3 2 39 39 H 1.09000 * 110.72573 * 279.57350 * 20 19 3 40 40 H 1.09006 * 110.76649 * 156.21974 * 20 19 3 41 41 H 1.08996 * 110.48859 * 203.40835 * 21 20 19 42 42 H 1.08995 * 110.48921 * 80.75679 * 21 20 19 43 43 H 1.09002 * 110.03591 * 238.57272 * 22 3 2 44 44 H 1.09002 * 110.02800 * 0.02562 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.5305 2.1698 1.2175 5 8 2.3108 2.6455 2.0078 6 8 0.2095 2.2890 1.4241 7 6 -0.2094 3.0017 2.6178 8 6 -1.7376 3.0356 2.6817 9 6 -2.2842 3.7491 1.4436 10 6 -2.2780 1.6049 2.7261 11 6 -2.1724 3.7748 3.9210 12 1 -1.4325 4.1803 4.5953 13 6 -3.5145 3.9344 4.1933 14 7 -4.4152 3.4411 3.3719 15 14 -4.0532 4.8513 5.7290 16 1 -2.8555 5.3044 6.4808 17 1 -4.8689 6.0301 5.3412 18 1 -4.8637 3.9488 6.5857 19 6 1.5766 2.1668 -1.2807 20 6 2.7747 3.0746 -1.6574 21 6 3.9976 2.1902 -1.3088 22 6 3.5786 1.4575 -0.0174 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8899 28 1 0.1804 2.4936 3.4999 29 1 0.1753 4.0211 2.5861 30 1 -1.9697 3.2141 0.5475 31 1 -3.3729 3.7729 1.4889 32 1 -1.8991 4.7683 1.4121 33 1 -1.8887 1.0965 3.6081 34 1 -3.3669 1.6290 2.7711 35 1 -1.9636 1.0698 1.8299 36 1 -5.3596 3.5531 3.5637 37 1 1.3785 1.4476 -2.0754 38 1 0.6900 2.7680 -1.0794 39 1 2.7727 3.9847 -1.0575 40 1 2.7604 3.3118 -2.7212 41 1 4.8767 2.8087 -1.1283 42 1 4.1910 1.4745 -2.1077 43 1 3.9567 1.9916 0.8544 44 1 3.9619 0.4372 -0.0263 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000184763974.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:54 Heat of formation + Delta-G solvation = -131.167851 kcal Electronic energy + Delta-G solvation = -22223.754839 eV Core-core repulsion = 19139.477727 eV Total energy + Delta-G solvation = -3084.277112 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.97963 -39.27991 -37.99734 -36.63675 -34.12237 -33.23149 -29.77112 -29.07422 -27.63634 -27.55308 -27.05730 -23.78358 -23.65435 -21.64808 -20.74317 -20.26657 -18.23012 -17.77820 -17.51180 -17.44317 -16.68132 -16.03284 -15.61957 -15.04676 -14.97589 -14.66777 -14.48073 -14.04540 -13.86091 -13.74992 -13.36952 -13.13983 -12.87467 -12.78216 -12.62867 -12.39571 -12.33329 -12.19551 -12.04713 -12.00340 -11.84849 -11.74682 -11.66304 -11.46018 -11.35481 -11.31708 -11.14614 -11.01819 -10.72608 -10.41133 -8.05660 -6.23525 1.24841 1.40341 1.43343 1.53085 1.83568 2.44413 3.17598 3.43353 3.58012 3.71905 4.02047 4.24078 4.24912 4.27500 4.32836 4.39426 4.56770 4.59403 4.65906 4.69160 4.81952 4.83964 4.90494 4.97857 5.04429 5.06454 5.12479 5.16620 5.19159 5.20769 5.26355 5.30602 5.34737 5.38810 5.47903 5.60488 5.63278 5.67855 5.77236 6.08422 6.18049 6.37049 6.77806 6.85693 7.44397 8.93941 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.032881 B = 0.004836 C = 0.004664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.350382 B = 5788.876796 C = 6001.649805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.100 4.100 3 C -0.053 4.053 4 C 0.457 3.543 5 O -0.552 6.552 6 O -0.335 6.335 7 C 0.092 3.908 8 C 0.064 3.936 9 C -0.116 4.116 10 C -0.118 4.118 11 C -0.535 4.535 12 H 0.045 0.955 13 C 0.030 3.970 14 N -0.897 5.897 15 Si 0.951 3.049 16 H -0.275 1.275 17 H -0.279 1.279 18 H -0.279 1.279 19 C -0.109 4.109 20 C -0.130 4.130 21 C -0.114 4.114 22 C -0.121 4.121 23 H 0.063 0.937 24 H 0.056 0.944 25 H 0.064 0.936 26 H 0.059 0.941 27 H 0.109 0.891 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.034 0.966 31 H 0.063 0.937 32 H 0.016 0.984 33 H 0.016 0.984 34 H 0.062 0.938 35 H 0.039 0.961 36 H 0.262 0.738 37 H 0.109 0.891 38 H 0.057 0.943 39 H 0.043 0.957 40 H 0.093 0.907 41 H 0.069 0.931 42 H 0.094 0.906 43 H 0.060 0.940 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.029 -6.455 -12.131 18.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.138 4.138 3 C -0.054 4.054 4 C 0.303 3.697 5 O -0.443 6.443 6 O -0.250 6.250 7 C 0.019 3.981 8 C 0.064 3.936 9 C -0.174 4.174 10 C -0.176 4.176 11 C -0.573 4.573 12 H 0.063 0.937 13 C -0.170 4.170 14 N -0.536 5.536 15 Si 0.777 3.223 16 H -0.200 1.200 17 H -0.204 1.204 18 H -0.204 1.204 19 C -0.147 4.147 20 C -0.168 4.168 21 C -0.151 4.151 22 C -0.158 4.158 23 H 0.082 0.918 24 H 0.075 0.925 25 H 0.083 0.917 26 H 0.078 0.922 27 H 0.128 0.872 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.082 0.918 32 H 0.035 0.965 33 H 0.035 0.965 34 H 0.081 0.919 35 H 0.058 0.942 36 H 0.072 0.928 37 H 0.127 0.873 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.112 0.888 41 H 0.088 0.912 42 H 0.112 0.888 43 H 0.079 0.921 44 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 12.012 -6.315 -11.887 18.040 hybrid contribution -0.491 0.918 1.602 1.910 sum 11.521 -5.397 -10.285 16.360 Atomic orbital electron populations 1.22146 0.95323 1.02109 1.03319 1.21626 0.96471 0.91792 1.03871 1.21469 0.97277 0.96479 0.90208 1.24557 0.80768 0.76782 0.87627 1.90557 1.57978 1.47744 1.48018 1.86643 1.24783 1.68491 1.45084 1.23217 0.97805 0.93579 0.83521 1.18221 0.86391 0.94357 0.94630 1.21594 1.02644 0.97050 0.96086 1.21653 1.02589 0.95863 0.97454 1.21225 0.92242 1.36242 1.07559 0.93699 1.25476 0.96461 0.96041 0.99067 1.69942 1.01019 1.45462 1.37139 0.85622 0.78074 0.78564 0.80045 1.19975 1.20448 1.20423 1.22542 0.98276 0.99021 0.94846 1.22594 0.94568 0.97432 1.02160 1.22341 0.97501 0.98637 0.96618 1.22372 0.90744 1.02844 0.99887 0.91822 0.92550 0.91700 0.92200 0.87228 0.93913 0.94046 0.94735 0.91810 0.96483 0.96512 0.91912 0.94186 0.92822 0.87263 0.92380 0.93841 0.88826 0.91220 0.88775 0.92145 0.88749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.29 9.17 71.98 0.66 -3.63 16 2 C -0.10 -2.13 4.61 30.59 0.14 -1.99 16 3 C -0.05 -1.34 0.65 -52.21 -0.03 -1.37 16 4 C 0.46 16.52 6.43 71.24 0.46 16.97 16 5 O -0.55 -23.24 14.96 21.98 0.33 -22.91 16 6 O -0.33 -13.24 5.65 -51.44 -0.29 -13.53 16 7 C 0.09 4.24 4.26 71.98 0.31 4.55 16 8 C 0.06 3.19 0.58 -52.93 -0.03 3.16 16 9 C -0.12 -5.61 8.11 71.98 0.58 -5.02 16 10 C -0.12 -5.66 8.11 71.98 0.58 -5.08 16 11 C -0.53 -29.22 8.01 25.60 0.21 -29.02 16 12 H 0.04 2.49 7.74 -2.91 -0.02 2.47 16 13 C 0.03 1.60 5.15 84.65 0.44 2.03 16 14 N -0.90 -48.97 9.35 21.44 0.20 -48.76 16 15 Si 0.95 43.10 29.54 68.60 2.03 45.12 16 16 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 17 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 18 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 19 C -0.11 -2.37 4.83 31.69 0.15 -2.21 16 20 C -0.13 -2.52 6.91 31.91 0.22 -2.30 16 21 C -0.11 -1.91 6.83 31.67 0.22 -1.70 16 22 C -0.12 -2.65 6.05 31.32 0.19 -2.46 16 23 H 0.06 1.49 7.22 -2.39 -0.02 1.47 16 24 H 0.06 1.83 3.67 -2.39 -0.01 1.82 16 25 H 0.06 1.41 8.14 -2.38 -0.02 1.39 16 26 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.11 1.59 8.13 -2.39 -0.02 1.57 16 28 H 0.04 2.02 8.13 -2.39 -0.02 2.00 16 29 H 0.04 1.97 8.13 -2.39 -0.02 1.95 16 30 H 0.03 1.49 7.68 -2.39 -0.02 1.48 16 31 H 0.06 3.34 6.07 -2.39 -0.01 3.33 16 32 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.02 0.76 8.14 -2.39 -0.02 0.75 16 34 H 0.06 3.28 6.07 -2.38 -0.01 3.27 16 35 H 0.04 1.72 6.06 -2.38 -0.01 1.70 16 36 H 0.26 13.62 8.31 -92.70 -0.77 12.85 16 37 H 0.11 1.74 7.72 -2.39 -0.02 1.72 16 38 H 0.06 1.52 7.63 -2.39 -0.02 1.50 16 39 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.09 1.37 8.14 -2.38 -0.02 1.35 16 41 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.06 1.69 6.40 -2.39 -0.02 1.68 16 44 H 0.09 1.61 7.67 -2.39 -0.02 1.59 16 Total: -1.00 -61.29 332.31 7.31 -53.98 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 0.96 Total: 14.17 kcal Atomic # 6 Polarization: -32.16 SS G_CDS: 4.09 Total: -28.07 kcal Atomic # 7 Polarization: -48.97 SS G_CDS: 0.20 Total: -48.76 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: 0.04 Total: -36.44 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.12 kcal Total: -61.29 7.31 -53.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184763974.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.183 kcal (2) G-P(sol) polarization free energy of solvation -61.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds