Wall clock time and date at job start Mon Mar 30 2020 07:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47488 * 2 1 4 4 C 1.53007 * 109.47061 * 240.00013 * 2 1 3 5 5 C 1.50694 * 109.46959 * 60.00242 * 4 2 1 6 6 H 1.08005 * 120.00163 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99933 * 180.02562 * 5 4 2 8 8 N 1.31512 * 119.99828 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99829 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47169 * 89.99942 * 9 7 5 11 11 H 1.48506 * 109.46968 * 209.99565 * 9 7 5 12 12 H 1.48495 * 109.47176 * 329.99917 * 9 7 5 13 13 C 1.52999 * 109.47024 * 120.00636 * 2 1 3 14 14 O 1.42901 * 109.46672 * 299.99598 * 13 2 1 15 15 C 1.34934 * 116.99894 * 180.02562 * 14 13 2 16 16 O 1.21659 * 120.00061 * 0.02562 * 15 14 13 17 17 C 1.41561 * 119.99907 * 180.02562 * 15 14 13 18 18 C 1.33582 * 118.79409 * 179.97438 * 17 15 14 19 19 O 1.34306 * 123.06762 * 180.42946 * 18 17 15 20 20 C 1.45354 * 117.48516 * 343.64434 * 19 18 17 21 21 C 1.53477 * 108.27273 * 47.49588 * 20 19 18 22 22 C 1.50421 * 118.79548 * 359.73172 * 17 15 14 23 23 H 1.09003 * 109.47043 * 300.00142 * 1 2 3 24 24 H 1.09006 * 109.47130 * 59.99596 * 1 2 3 25 25 H 1.08999 * 109.47232 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47581 * 180.02562 * 3 2 1 27 27 H 1.08996 * 109.47306 * 300.00390 * 3 2 1 28 28 H 1.09003 * 109.47094 * 59.99890 * 3 2 1 29 29 H 1.08998 * 109.47035 * 180.02562 * 4 2 1 30 30 H 1.08999 * 109.47130 * 300.00102 * 4 2 1 31 31 H 0.97005 * 120.00048 * 179.97438 * 8 7 5 32 32 H 1.09006 * 109.47304 * 180.02562 * 13 2 1 33 33 H 1.08999 * 109.47592 * 59.99638 * 13 2 1 34 34 H 1.08003 * 118.46492 * 0.40981 * 18 17 15 35 35 H 1.08995 * 109.71115 * 167.19761 * 20 19 18 36 36 H 1.09003 * 109.70220 * 287.76465 * 20 19 18 37 37 H 1.08999 * 109.70357 * 56.96060 * 21 20 19 38 38 H 1.09000 * 109.70807 * 177.57652 * 21 20 19 39 39 H 1.09008 * 109.45464 * 282.36384 * 22 17 15 40 40 H 1.08999 * 109.45483 * 42.30752 * 22 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 1.5377 -0.0108 -2.4797 6 1 0.9164 0.8671 -2.3806 7 6 1.8703 -0.4822 -3.7320 8 7 2.6264 -1.5515 -3.8526 9 14 1.2471 0.3981 -5.2572 10 1 2.2250 1.4397 -5.6619 11 1 1.0817 -0.5813 -6.3612 12 1 -0.0609 1.0357 -4.9610 13 6 2.0399 -0.7214 1.2492 14 8 1.5636 -0.0477 2.4160 15 6 1.9266 -0.5602 3.6102 16 8 2.6291 -1.5523 3.6583 17 6 1.4899 0.0565 4.8073 18 6 1.8630 -0.4714 5.9763 19 8 1.4919 0.0381 7.1622 20 6 0.9664 1.3933 7.1753 21 6 -0.0789 1.5149 6.0581 22 6 0.6272 1.2854 4.7163 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 3.1301 1.4424 -0.0005 27 1 1.6767 1.9563 -0.8899 28 1 1.6767 1.9563 0.8900 29 1 3.1300 -0.7217 -1.2491 30 1 1.6766 -1.7489 -1.2493 31 1 2.8601 -1.8833 -4.7337 32 1 3.1300 -0.7210 1.2494 33 1 1.6766 -1.7490 1.2492 34 1 2.4924 -1.3490 5.9673 35 1 0.4999 1.5974 8.1389 36 1 1.7754 2.1028 7.0011 37 1 -0.8575 0.7654 6.2002 38 1 -0.5201 2.5115 6.0744 39 1 1.2487 2.1484 4.4771 40 1 -0.1192 1.1478 3.9339 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195043366.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:40 Heat of formation + Delta-G solvation = -135.802551 kcal Electronic energy + Delta-G solvation = -20762.767265 eV Core-core repulsion = 17542.456082 eV Total energy + Delta-G solvation = -3220.311182 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 268.151 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.87470 -39.71305 -37.22118 -35.33561 -34.43964 -32.31258 -31.93535 -27.37487 -26.56671 -26.37648 -25.99714 -24.63034 -22.93866 -21.55136 -19.22832 -18.34071 -17.87660 -16.73053 -16.32740 -16.23940 -16.11184 -15.55358 -14.57478 -14.49031 -14.35349 -13.71573 -13.55367 -13.35402 -13.09600 -12.93049 -12.32676 -12.24813 -12.03692 -11.55967 -11.24899 -11.23209 -10.98153 -10.95014 -10.81358 -10.57151 -10.41450 -10.24422 -10.16359 -10.11271 -9.67203 -9.17904 -8.91229 -8.80024 -8.34751 -5.98892 -3.99904 1.08581 2.79249 3.13337 3.30578 3.32504 3.39256 3.42137 4.33299 4.42209 4.47133 4.57791 4.82756 4.89126 5.11448 5.30145 5.32854 5.36806 5.56633 5.58491 5.61371 5.79083 5.87514 5.92401 5.99596 6.11405 6.24941 6.42847 6.54465 6.68080 6.74017 6.85919 6.96757 7.14141 7.15353 7.17941 7.64264 7.76455 7.99696 8.10045 8.42478 9.04586 9.62997 11.12819 Molecular weight = 268.15amu Principal moments of inertia in cm(-1) A = 0.043879 B = 0.003642 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.967992 B = 7685.752173 C = 8095.979420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.058 4.058 3 C -0.125 4.125 4 C 0.035 3.965 5 C -0.509 4.509 6 H 0.061 0.939 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.078 3.922 14 O -0.341 6.341 15 C 0.514 3.486 16 O -0.533 6.533 17 C -0.292 4.292 18 C 0.162 3.838 19 O -0.307 6.307 20 C 0.050 3.950 21 C -0.159 4.159 22 C -0.067 4.067 23 H 0.038 0.962 24 H 0.065 0.935 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.064 0.936 28 H 0.038 0.962 29 H 0.018 0.982 30 H 0.018 0.982 31 H 0.260 0.740 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.182 0.818 35 H 0.109 0.891 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.424 6.915 20.989 22.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.058 4.058 3 C -0.182 4.182 4 C -0.002 4.002 5 C -0.547 4.547 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.004 3.996 14 O -0.257 6.257 15 C 0.362 3.638 16 O -0.427 6.427 17 C -0.295 4.295 18 C 0.095 3.905 19 O -0.218 6.218 20 C -0.024 4.024 21 C -0.196 4.196 22 C -0.104 4.104 23 H 0.057 0.943 24 H 0.084 0.916 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.083 0.917 28 H 0.057 0.943 29 H 0.036 0.964 30 H 0.036 0.964 31 H 0.070 0.930 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.198 0.802 35 H 0.127 0.873 36 H 0.094 0.906 37 H 0.097 0.903 38 H 0.107 0.893 39 H 0.095 0.905 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -4.152 6.448 21.026 22.381 hybrid contribution -0.162 0.346 -1.265 1.321 sum -4.313 6.794 19.762 21.337 Atomic orbital electron populations 1.21704 0.94924 1.00877 1.00698 1.20793 0.96041 0.96113 0.92822 1.21702 0.99987 0.95808 1.00706 1.19123 0.96350 0.95286 0.89485 1.21163 1.31144 1.12078 0.90336 0.92103 1.25018 0.95335 0.95082 0.99106 1.69969 1.37059 1.23039 1.23451 0.86621 0.79230 0.79386 0.82927 1.20745 1.21335 1.19872 1.23049 0.98825 0.96026 0.81713 1.86170 1.69457 1.55500 1.14552 1.19339 0.77649 0.81965 0.84807 1.90858 1.37210 1.26186 1.88433 1.19413 1.12489 1.05994 0.91566 1.23007 0.89298 0.94973 0.83220 1.86276 1.75664 1.31490 1.28371 1.23621 0.97105 0.80713 1.00912 1.22270 0.98398 1.03912 0.95053 1.20228 0.98045 0.94647 0.97489 0.94282 0.91648 0.93814 0.93828 0.91661 0.94258 0.96390 0.96377 0.93036 0.92049 0.92030 0.80153 0.87271 0.90609 0.90280 0.89347 0.90468 0.89190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.41 8.07 37.16 0.30 -2.11 16 2 C -0.06 -1.19 0.61 -154.51 -0.09 -1.28 16 3 C -0.12 -2.41 8.07 37.15 0.30 -2.11 16 4 C 0.03 0.88 4.04 -27.88 -0.11 0.77 16 5 C -0.51 -13.85 7.65 -34.44 -0.26 -14.12 16 6 H 0.06 1.60 5.68 -52.48 -0.30 1.30 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 9 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 13 C 0.08 1.50 4.24 37.16 0.16 1.66 16 14 O -0.34 -5.89 7.98 -41.14 -0.33 -6.22 16 15 C 0.51 8.34 7.64 32.00 0.24 8.59 16 16 O -0.53 -9.96 15.69 -19.39 -0.30 -10.27 16 17 C -0.29 -3.61 5.69 -105.12 -0.60 -4.21 16 18 C 0.16 1.74 10.47 29.10 0.30 2.05 16 19 O -0.31 -2.85 10.47 -14.77 -0.15 -3.01 16 20 C 0.05 0.32 7.15 37.40 0.27 0.59 16 21 C -0.16 -1.10 6.24 -26.30 -0.16 -1.26 16 22 C -0.07 -0.67 5.52 -27.83 -0.15 -0.82 16 23 H 0.04 0.66 7.68 -51.93 -0.40 0.27 16 24 H 0.06 1.32 6.62 -51.93 -0.34 0.98 16 25 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.04 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.06 1.31 6.62 -51.93 -0.34 0.97 16 28 H 0.04 0.67 7.68 -51.93 -0.40 0.27 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 32 H 0.06 1.22 8.13 -51.93 -0.42 0.79 16 33 H 0.06 1.22 8.13 -51.93 -0.42 0.80 16 34 H 0.18 1.88 7.21 -52.48 -0.38 1.50 16 35 H 0.11 0.44 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.74 8.14 -51.92 -0.42 0.31 16 40 H 0.09 0.98 7.88 -51.93 -0.41 0.57 16 LS Contribution 326.35 15.07 4.92 4.92 Total: -1.00 -31.47 326.35 -6.42 -37.89 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -6.35 Total: -2.91 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: 0.09 Total: -10.80 kcal Atomic # 7 Polarization: -26.78 SS G_CDS: 0.74 Total: -26.04 kcal Atomic # 8 Polarization: -18.70 SS G_CDS: -0.79 Total: -19.49 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -31.47 -6.42 -37.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195043366.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.913 kcal (2) G-P(sol) polarization free energy of solvation -31.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.889 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds