Wall clock time and date at job start Mon Mar 30 2020 08:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.46974 * 2 1 4 4 C 1.52997 * 115.55348 * 325.58571 * 3 2 1 5 5 C 1.53002 * 117.49626 * 111.25601 * 3 2 1 6 6 C 1.53003 * 117.49616 * 179.91221 * 3 2 1 7 7 H 1.09000 * 117.50011 * 145.00540 * 6 3 2 8 8 C 1.50694 * 117.50161 * 0.02562 * 6 3 2 9 9 O 1.20829 * 119.99967 * 359.97438 * 8 6 3 10 10 O 1.34232 * 120.00418 * 179.97438 * 8 6 3 11 11 C 1.45194 * 117.00105 * 179.97438 * 10 8 6 12 12 C 1.53007 * 109.47015 * 180.02562 * 11 10 8 13 13 C 1.52994 * 109.47004 * 300.00176 * 12 11 10 14 14 C 1.53001 * 109.47113 * 60.00288 * 12 11 10 15 15 C 1.52997 * 109.47291 * 180.02562 * 12 11 10 16 16 C 1.50695 * 109.47354 * 179.97438 * 15 12 11 17 17 H 1.08004 * 120.00036 * 0.02562 * 16 15 12 18 18 C 1.37880 * 120.00254 * 180.02562 * 16 15 12 19 19 N 1.31518 * 119.99765 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00200 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47117 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47466 * 119.99845 * 20 18 16 23 23 H 1.48497 * 109.47066 * 240.00082 * 20 18 16 24 24 H 1.09004 * 109.47536 * 59.99954 * 1 2 3 25 25 H 1.09002 * 109.46995 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47147 * 299.99873 * 1 2 3 27 27 H 1.09007 * 109.46954 * 240.00348 * 2 1 3 28 28 H 1.08995 * 109.47129 * 120.00473 * 2 1 3 29 29 H 1.09002 * 109.47153 * 34.41373 * 4 3 2 30 30 H 1.09001 * 109.46832 * 274.41564 * 4 3 2 31 31 H 1.09004 * 109.47261 * 154.41545 * 4 3 2 32 32 H 1.09003 * 117.49882 * 215.00500 * 5 3 2 33 33 H 1.09002 * 117.49659 * 0.02562 * 5 3 2 34 34 H 1.08999 * 109.47353 * 299.99766 * 11 10 8 35 35 H 1.08993 * 109.47156 * 60.00435 * 11 10 8 36 36 H 1.08998 * 109.47484 * 59.99865 * 13 12 11 37 37 H 1.08996 * 109.47385 * 179.97438 * 13 12 11 38 38 H 1.09002 * 109.47473 * 299.99794 * 13 12 11 39 39 H 1.08996 * 109.46999 * 59.99759 * 14 12 11 40 40 H 1.08996 * 109.47158 * 180.02562 * 14 12 11 41 41 H 1.09011 * 109.46573 * 300.00065 * 14 12 11 42 42 H 1.08996 * 109.47127 * 300.00428 * 15 12 11 43 43 H 1.09005 * 109.46678 * 59.99898 * 15 12 11 44 44 H 0.96998 * 119.99892 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.1863 2.4443 -0.7801 5 6 2.7393 1.9445 1.2649 6 6 3.5550 1.6561 0.0021 7 1 3.9435 2.5104 -0.5523 8 6 4.4306 0.4297 0.0034 9 8 3.9301 -0.6700 0.0032 10 8 5.7667 0.5589 0.0047 11 6 6.5474 -0.6653 0.0065 12 6 8.0379 -0.3197 0.0084 13 6 8.3736 0.4975 -1.2407 14 6 8.3700 0.4988 1.2578 15 6 8.8606 -1.6096 0.0097 16 6 10.3286 -1.2692 0.0109 17 1 10.6434 -0.2361 0.0113 18 6 11.2699 -2.2767 0.0117 19 7 10.8866 -3.5348 0.0107 20 14 13.0896 -1.8548 0.0140 21 1 13.2556 -0.3791 0.0142 22 1 13.7286 -2.4253 1.2269 23 1 13.7314 -2.4244 -1.1980 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 0.1347 2.1710 -0.6929 30 1 1.4792 2.4312 -1.8299 31 1 1.3368 3.4443 -0.3733 32 1 2.5911 2.9884 1.5412 33 1 2.8364 1.2469 2.0968 34 1 6.3086 -1.2472 0.8966 35 1 6.3105 -1.2485 -0.8833 36 1 7.7875 1.4165 -1.2421 37 1 9.4353 0.7441 -1.2391 38 1 8.1370 -0.0856 -2.1308 39 1 8.1308 -0.0834 2.1476 40 1 9.4317 0.7454 1.2589 41 1 7.7839 1.4178 1.2564 42 1 8.6215 -2.1922 0.8993 43 1 8.6238 -2.1923 -0.8806 44 1 11.5488 -4.2435 0.0116 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195059700.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:08 Heat of formation + Delta-G solvation = -91.566187 kcal Electronic energy + Delta-G solvation = -20971.750001 eV Core-core repulsion = 17889.190146 eV Total energy + Delta-G solvation = -3082.559855 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.62500 -38.53448 -36.78463 -35.28139 -32.46416 -32.27417 -28.64426 -27.38361 -26.57917 -26.39453 -24.52071 -23.96708 -22.76504 -20.48024 -19.03253 -18.10249 -17.48677 -16.33809 -16.09322 -15.80272 -15.01232 -14.57868 -14.37447 -14.31365 -13.65933 -13.40713 -13.34356 -13.01023 -12.45233 -12.42657 -12.24739 -12.06276 -12.00850 -11.91544 -11.34869 -11.25202 -11.12604 -10.97496 -10.80805 -10.59757 -10.39209 -10.30920 -10.26091 -10.20393 -10.10788 -9.78141 -9.71446 -9.18884 -8.92604 -8.36873 -6.00846 -4.01834 2.27327 2.87825 3.30609 3.38549 3.41848 3.53638 4.35122 4.44501 4.52591 4.61195 4.79177 5.06984 5.17939 5.30824 5.34957 5.40066 5.46799 5.51454 5.52865 5.53572 5.56273 5.72978 5.77004 5.83994 5.90748 6.02753 6.07651 6.15521 6.21117 6.37410 6.40273 6.53122 6.67085 6.72339 6.88167 7.11967 7.13138 7.15113 7.61432 7.73220 7.97683 8.05194 8.40224 9.02809 9.61287 11.10906 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.044793 B = 0.003401 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.943760 B = 8230.038711 C = 8524.221726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.081 4.081 3 C -0.090 4.090 4 C -0.123 4.123 5 C -0.144 4.144 6 C -0.163 4.163 7 H 0.132 0.868 8 C 0.485 3.515 9 O -0.509 6.509 10 O -0.347 6.347 11 C 0.080 3.920 12 C -0.059 4.059 13 C -0.125 4.125 14 C -0.125 4.125 15 C 0.035 3.965 16 C -0.509 4.509 17 H 0.062 0.938 18 C 0.055 3.945 19 N -0.896 5.896 20 Si 0.890 3.110 21 H -0.272 1.272 22 H -0.285 1.285 23 H -0.285 1.285 24 H 0.056 0.944 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.039 0.961 37 H 0.065 0.935 38 H 0.043 0.957 39 H 0.043 0.957 40 H 0.065 0.935 41 H 0.039 0.961 42 H 0.018 0.982 43 H 0.018 0.982 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.391 11.934 0.208 21.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.118 4.118 3 C -0.090 4.090 4 C -0.180 4.180 5 C -0.181 4.181 6 C -0.182 4.182 7 H 0.150 0.850 8 C 0.328 3.672 9 O -0.398 6.398 10 O -0.263 6.263 11 C 0.007 3.993 12 C -0.059 4.059 13 C -0.183 4.183 14 C -0.183 4.183 15 C -0.002 4.002 16 C -0.547 4.547 17 H 0.080 0.920 18 C -0.146 4.146 19 N -0.535 5.535 20 Si 0.718 3.282 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.211 1.211 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.078 0.922 32 H 0.126 0.874 33 H 0.119 0.881 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.058 0.942 37 H 0.084 0.916 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.084 0.916 41 H 0.058 0.942 42 H 0.036 0.964 43 H 0.036 0.964 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -18.420 11.406 0.206 21.666 hybrid contribution 1.243 -0.116 -0.014 1.248 sum -17.177 11.290 0.192 20.556 Atomic orbital electron populations 1.21923 0.96263 1.01481 1.01464 1.21151 0.94433 0.92260 1.03968 1.21713 0.89977 0.97915 0.99425 1.21527 0.99837 0.96988 0.99658 1.23284 1.00809 1.02924 0.91033 1.21917 0.92376 0.97728 1.06217 0.85019 1.22510 0.82266 0.89804 0.72610 1.90649 1.75080 1.28342 1.45766 1.86477 1.17902 1.39172 1.82784 1.23487 0.91084 0.82951 1.01800 1.20811 0.89350 0.99660 0.96079 1.21708 1.01882 0.98158 0.96518 1.21709 1.01883 0.98163 0.96499 1.19127 0.93993 0.89689 0.97433 1.21196 0.90592 0.92781 1.50101 0.92017 1.25021 0.98967 0.95060 0.95516 1.69979 1.33690 0.98834 1.51012 0.86558 0.85551 0.78513 0.77530 1.19708 1.21102 1.21107 0.92506 0.92774 0.92894 0.90667 0.90900 0.90724 0.91869 0.92213 0.87424 0.88090 0.91733 0.91694 0.94229 0.91581 0.93801 0.93817 0.91589 0.94200 0.96377 0.96368 0.93077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.92 37.16 0.33 -0.98 16 2 C -0.08 -0.90 4.36 -26.73 -0.12 -1.02 16 3 C -0.09 -0.89 2.46 -154.51 -0.38 -1.27 16 4 C -0.12 -0.91 9.49 37.16 0.35 -0.56 16 5 C -0.14 -1.35 9.53 -26.69 -0.25 -1.61 16 6 C -0.16 -1.87 6.02 -91.74 -0.55 -2.43 16 7 H 0.13 1.31 8.14 -51.93 -0.42 0.89 16 8 C 0.48 7.55 7.72 36.00 0.28 7.83 16 9 O -0.51 -8.95 12.86 -18.75 -0.24 -9.19 16 10 O -0.35 -5.94 8.88 -39.26 -0.35 -6.29 16 11 C 0.08 1.52 4.32 37.16 0.16 1.68 16 12 C -0.06 -1.21 0.61 -154.51 -0.09 -1.31 16 13 C -0.13 -2.43 8.08 37.15 0.30 -2.12 16 14 C -0.13 -2.42 8.08 37.16 0.30 -2.12 16 15 C 0.03 0.87 4.04 -27.89 -0.11 0.76 16 16 C -0.51 -13.79 7.65 -34.44 -0.26 -14.06 16 17 H 0.06 1.62 5.68 -52.48 -0.30 1.32 16 18 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 19 N -0.90 -26.66 13.29 55.43 0.74 -25.93 16 20 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 23 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 24 H 0.06 0.42 6.45 -51.93 -0.33 0.09 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.98 7.27 -51.92 -0.38 0.60 16 28 H 0.07 0.93 7.01 -51.93 -0.36 0.57 16 29 H 0.07 0.48 5.59 -51.93 -0.29 0.19 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.37 7.90 -51.93 -0.41 -0.04 16 32 H 0.11 0.77 8.05 -51.93 -0.42 0.36 16 33 H 0.10 1.02 8.05 -51.93 -0.42 0.60 16 34 H 0.06 1.25 8.13 -51.93 -0.42 0.82 16 35 H 0.06 1.26 8.13 -51.93 -0.42 0.83 16 36 H 0.04 0.68 7.68 -51.93 -0.40 0.28 16 37 H 0.07 1.34 6.62 -51.93 -0.34 0.99 16 38 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 1.33 6.62 -51.93 -0.34 0.99 16 41 H 0.04 0.69 7.68 -51.92 -0.40 0.29 16 42 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 LS Contribution 346.94 15.07 5.23 5.23 Total: -1.00 -30.04 346.94 -7.55 -37.59 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -7.76 Total: -2.05 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: -0.15 Total: -15.75 kcal Atomic # 7 Polarization: -26.66 SS G_CDS: 0.74 Total: -25.93 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.59 Total: -15.48 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.04 -7.55 -37.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195059700.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.976 kcal (2) G-P(sol) polarization free energy of solvation -30.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds