Wall clock time and date at job start Mon Mar 30 2020 08:00:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.46974 * 2 1 4 4 C 1.52997 * 115.55348 * 325.58571 * 3 2 1 5 5 C 1.53002 * 117.49626 * 111.25601 * 3 2 1 6 6 C 1.53003 * 117.49616 * 179.91221 * 3 2 1 7 7 H 1.09000 * 117.50011 * 145.00540 * 6 3 2 8 8 C 1.50694 * 117.50161 * 0.02562 * 6 3 2 9 9 O 1.20829 * 119.99967 * 359.97438 * 8 6 3 10 10 O 1.34232 * 120.00418 * 179.97438 * 8 6 3 11 11 C 1.45194 * 117.00105 * 179.97438 * 10 8 6 12 12 C 1.53007 * 109.47015 * 180.02562 * 11 10 8 13 13 C 1.52994 * 109.47004 * 300.00176 * 12 11 10 14 14 C 1.53001 * 109.47113 * 60.00288 * 12 11 10 15 15 C 1.52997 * 109.47291 * 180.02562 * 12 11 10 16 16 C 1.50695 * 109.47354 * 179.97438 * 15 12 11 17 17 H 1.08004 * 120.00036 * 0.02562 * 16 15 12 18 18 C 1.37880 * 120.00254 * 180.02562 * 16 15 12 19 19 N 1.31518 * 119.99765 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00200 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47117 * 359.97438 * 20 18 16 22 22 H 1.48492 * 109.47466 * 119.99845 * 20 18 16 23 23 H 1.48497 * 109.47066 * 240.00082 * 20 18 16 24 24 H 1.09004 * 109.47536 * 59.99954 * 1 2 3 25 25 H 1.09002 * 109.46995 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47147 * 299.99873 * 1 2 3 27 27 H 1.09007 * 109.46954 * 240.00348 * 2 1 3 28 28 H 1.08995 * 109.47129 * 120.00473 * 2 1 3 29 29 H 1.09002 * 109.47153 * 34.41373 * 4 3 2 30 30 H 1.09001 * 109.46832 * 274.41564 * 4 3 2 31 31 H 1.09004 * 109.47261 * 154.41545 * 4 3 2 32 32 H 1.09003 * 117.49882 * 215.00500 * 5 3 2 33 33 H 1.09002 * 117.49659 * 0.02562 * 5 3 2 34 34 H 1.08999 * 109.47353 * 299.99766 * 11 10 8 35 35 H 1.08993 * 109.47156 * 60.00435 * 11 10 8 36 36 H 1.08998 * 109.47484 * 59.99865 * 13 12 11 37 37 H 1.08996 * 109.47385 * 179.97438 * 13 12 11 38 38 H 1.09002 * 109.47473 * 299.99794 * 13 12 11 39 39 H 1.08996 * 109.46999 * 59.99759 * 14 12 11 40 40 H 1.08996 * 109.47158 * 180.02562 * 14 12 11 41 41 H 1.09011 * 109.46573 * 300.00065 * 14 12 11 42 42 H 1.08996 * 109.47127 * 300.00428 * 15 12 11 43 43 H 1.09005 * 109.46678 * 59.99898 * 15 12 11 44 44 H 0.96998 * 119.99892 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.1863 2.4443 -0.7801 5 6 2.7393 1.9445 1.2649 6 6 3.5550 1.6561 0.0021 7 1 3.9435 2.5104 -0.5523 8 6 4.4306 0.4297 0.0034 9 8 3.9301 -0.6700 0.0032 10 8 5.7667 0.5589 0.0047 11 6 6.5474 -0.6653 0.0065 12 6 8.0379 -0.3197 0.0084 13 6 8.3736 0.4975 -1.2407 14 6 8.3700 0.4988 1.2578 15 6 8.8606 -1.6096 0.0097 16 6 10.3286 -1.2692 0.0109 17 1 10.6434 -0.2361 0.0113 18 6 11.2699 -2.2767 0.0117 19 7 10.8866 -3.5348 0.0107 20 14 13.0896 -1.8548 0.0140 21 1 13.2556 -0.3791 0.0142 22 1 13.7286 -2.4253 1.2269 23 1 13.7314 -2.4244 -1.1980 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 0.1347 2.1710 -0.6929 30 1 1.4792 2.4312 -1.8299 31 1 1.3368 3.4443 -0.3733 32 1 2.5911 2.9884 1.5412 33 1 2.8364 1.2469 2.0968 34 1 6.3086 -1.2472 0.8966 35 1 6.3105 -1.2485 -0.8833 36 1 7.7875 1.4165 -1.2421 37 1 9.4353 0.7441 -1.2391 38 1 8.1370 -0.0856 -2.1308 39 1 8.1308 -0.0834 2.1476 40 1 9.4317 0.7454 1.2589 41 1 7.7839 1.4178 1.2564 42 1 8.6215 -2.1922 0.8993 43 1 8.6238 -2.1923 -0.8806 44 1 11.5488 -4.2435 0.0116 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195059700.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 08:00:08 Heat of formation + Delta-G solvation = -106.039710 kcal Electronic energy + Delta-G solvation = -20972.377620 eV Core-core repulsion = 17889.190146 eV Total energy + Delta-G solvation = -3083.187474 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.82826 -39.66755 -38.23671 -36.78210 -34.42814 -33.20397 -29.54266 -29.12898 -28.09384 -27.98531 -25.85455 -24.73454 -24.56296 -21.60712 -20.12277 -19.59918 -18.74162 -18.34584 -17.46931 -17.04813 -16.52661 -15.84492 -15.52467 -15.24063 -15.19621 -14.82974 -14.56651 -14.10532 -13.99212 -13.95352 -13.68509 -13.17884 -12.99920 -12.82215 -12.72230 -12.70704 -12.57746 -12.35287 -12.26088 -12.09717 -11.97323 -11.92523 -11.83586 -11.38760 -11.26334 -11.12389 -11.03927 -10.92214 -10.61041 -10.54971 -8.17196 -6.25200 1.08601 1.41247 1.41951 1.54289 1.64195 2.43110 2.68326 3.17414 3.51398 3.63141 3.76008 3.90239 3.91106 3.99794 4.10586 4.19571 4.44108 4.49693 4.56227 4.57606 4.70178 4.71987 4.78250 4.87421 4.96331 4.99286 5.02350 5.07357 5.10762 5.13479 5.22687 5.26251 5.37970 5.40200 5.42840 5.45504 5.51472 5.51860 5.61596 5.71862 5.85631 6.26402 6.76252 6.88857 7.42608 8.95819 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.044793 B = 0.003401 C = 0.003284 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.943760 B = 8230.038711 C = 8524.221726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.082 4.082 3 C -0.087 4.087 4 C -0.120 4.120 5 C -0.129 4.129 6 C -0.178 4.178 7 H 0.154 0.846 8 C 0.478 3.522 9 O -0.537 6.537 10 O -0.346 6.346 11 C 0.091 3.909 12 C -0.056 4.056 13 C -0.118 4.118 14 C -0.118 4.118 15 C 0.041 3.959 16 C -0.514 4.514 17 H 0.072 0.928 18 C -0.004 4.004 19 N -0.938 5.938 20 Si 0.961 3.039 21 H -0.257 1.257 22 H -0.282 1.282 23 H -0.283 1.283 24 H 0.071 0.929 25 H 0.050 0.950 26 H 0.065 0.935 27 H 0.048 0.952 28 H 0.047 0.953 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.079 0.921 32 H 0.141 0.859 33 H 0.089 0.911 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.057 0.943 38 H 0.037 0.963 39 H 0.037 0.963 40 H 0.057 0.943 41 H 0.065 0.935 42 H -0.011 1.011 43 H -0.011 1.011 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.151 15.093 0.285 24.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.120 4.120 3 C -0.087 4.087 4 C -0.176 4.176 5 C -0.165 4.165 6 C -0.196 4.196 7 H 0.171 0.829 8 C 0.323 3.677 9 O -0.427 6.427 10 O -0.262 6.262 11 C 0.017 3.983 12 C -0.056 4.056 13 C -0.175 4.175 14 C -0.175 4.175 15 C 0.003 3.997 16 C -0.552 4.552 17 H 0.090 0.910 18 C -0.201 4.201 19 N -0.579 5.579 20 Si 0.786 3.214 21 H -0.181 1.181 22 H -0.208 1.208 23 H -0.209 1.209 24 H 0.090 0.910 25 H 0.069 0.931 26 H 0.084 0.916 27 H 0.067 0.933 28 H 0.066 0.934 29 H 0.104 0.896 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.159 0.841 33 H 0.108 0.892 34 H 0.072 0.928 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.007 0.993 43 H 0.007 0.993 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.194 14.590 0.284 24.111 hybrid contribution 1.384 -1.149 -0.028 1.799 sum -17.810 13.441 0.256 22.315 Atomic orbital electron populations 1.21882 0.94034 1.01795 1.02804 1.21075 0.96402 0.93054 1.01468 1.21856 0.89041 0.97648 1.00173 1.21564 0.99745 0.97043 0.99286 1.23441 0.98657 1.04490 0.89941 1.22093 0.92508 0.96352 1.08676 0.82858 1.23472 0.81710 0.91087 0.71414 1.90651 1.75177 1.29915 1.46958 1.86466 1.18970 1.37580 1.83169 1.23080 0.90726 0.83710 1.00807 1.20638 0.89578 0.97618 0.97768 1.21632 1.01696 0.98850 0.95369 1.21630 1.01690 0.98838 0.95350 1.18979 0.94639 0.91463 0.94573 1.21565 0.91397 0.93238 1.49028 0.90963 1.25957 1.04002 0.94886 0.95263 1.70124 1.35333 1.00031 1.52439 0.85444 0.79512 0.78991 0.77414 1.18101 1.20844 1.20864 0.90967 0.93114 0.91616 0.93320 0.93396 0.89650 0.91838 0.90249 0.84117 0.89225 0.92798 0.92799 0.91573 0.92436 0.94377 0.94369 0.92446 0.91574 0.99300 0.99312 0.93037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 8.92 71.98 0.64 -1.67 16 2 C -0.08 -1.82 4.36 30.59 0.13 -1.68 16 3 C -0.09 -1.53 2.46 -52.18 -0.13 -1.66 16 4 C -0.12 -1.35 9.49 71.98 0.68 -0.66 16 5 C -0.13 -2.08 9.53 30.62 0.29 -1.78 16 6 C -0.18 -3.71 6.02 -11.52 -0.07 -3.78 16 7 H 0.15 2.54 8.14 -2.39 -0.02 2.52 16 8 C 0.48 14.76 7.72 71.23 0.55 15.31 16 9 O -0.54 -19.51 12.86 21.96 0.28 -19.23 16 10 O -0.35 -11.60 8.88 -51.44 -0.46 -12.06 16 11 C 0.09 3.52 4.32 71.98 0.31 3.83 16 12 C -0.06 -2.32 0.61 -52.18 -0.03 -2.35 16 13 C -0.12 -4.47 8.08 71.98 0.58 -3.89 16 14 C -0.12 -4.45 8.08 71.98 0.58 -3.87 16 15 C 0.04 2.13 4.04 29.85 0.12 2.25 16 16 C -0.51 -28.23 7.65 25.60 0.20 -28.04 16 17 H 0.07 3.75 5.68 -2.91 -0.02 3.73 16 18 C 0.00 -0.24 5.46 84.65 0.46 0.23 16 19 N -0.94 -57.41 13.29 21.45 0.28 -57.12 16 20 Si 0.96 44.05 29.54 68.60 2.03 46.07 16 21 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 22 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 23 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 24 H 0.07 0.91 6.45 -2.39 -0.02 0.89 16 25 H 0.05 0.81 8.14 -2.39 -0.02 0.80 16 26 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 27 H 0.05 1.31 7.27 -2.38 -0.02 1.29 16 28 H 0.05 1.27 7.01 -2.39 -0.02 1.25 16 29 H 0.08 0.79 5.59 -2.39 -0.01 0.78 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.08 0.62 7.90 -2.38 -0.02 0.60 16 32 H 0.14 1.37 8.05 -2.39 -0.02 1.36 16 33 H 0.09 1.68 8.05 -2.39 -0.02 1.66 16 34 H 0.05 2.18 8.13 -2.39 -0.02 2.16 16 35 H 0.05 2.18 8.13 -2.39 -0.02 2.17 16 36 H 0.07 2.14 7.68 -2.39 -0.02 2.12 16 37 H 0.06 2.26 6.62 -2.39 -0.02 2.24 16 38 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.06 2.25 6.62 -2.39 -0.02 2.24 16 41 H 0.07 2.14 7.68 -2.38 -0.02 2.12 16 42 H -0.01 -0.66 8.14 -2.39 -0.02 -0.67 16 43 H -0.01 -0.66 8.14 -2.38 -0.02 -0.68 16 44 H 0.26 15.06 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -66.72 346.94 7.41 -59.31 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: 0.95 Total: 10.79 kcal Atomic # 6 Polarization: -32.09 SS G_CDS: 4.32 Total: -27.76 kcal Atomic # 7 Polarization: -57.41 SS G_CDS: 0.28 Total: -57.12 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -0.17 Total: -31.29 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.07 kcal Total: -66.72 7.41 -59.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195059700.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.731 kcal (2) G-P(sol) polarization free energy of solvation -66.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds