Wall clock time and date at job start Mon Mar 30 2020 07:59:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46495 * 2 1 4 4 C 1.50697 * 112.85077 * 58.78689 * 3 2 1 5 5 O 1.20820 * 120.00196 * 234.49933 * 4 3 2 6 6 O 1.34233 * 120.00049 * 54.49920 * 4 3 2 7 7 C 1.45197 * 117.00113 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.47413 * 179.97438 * 7 6 4 9 9 C 1.52993 * 109.47211 * 300.00881 * 8 7 6 10 10 C 1.53005 * 109.46741 * 60.00332 * 8 7 6 11 11 C 1.52991 * 109.47249 * 180.02562 * 8 7 6 12 12 C 1.50701 * 109.47401 * 180.02562 * 11 8 7 13 13 H 1.08003 * 119.99685 * 0.02562 * 12 11 8 14 14 C 1.37876 * 120.00674 * 180.02562 * 12 11 8 15 15 N 1.31516 * 119.99426 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00409 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47173 * 89.99664 * 16 14 12 18 18 H 1.48501 * 109.47195 * 209.99831 * 16 14 12 19 19 H 1.48500 * 109.47154 * 330.00018 * 16 14 12 20 20 C 1.53790 * 113.68751 * 190.05200 * 3 2 1 21 21 C 1.53782 * 87.07831 * 89.12982 * 20 3 2 22 22 C 1.53781 * 87.08501 * 25.43229 * 21 20 3 23 23 H 1.08999 * 109.47263 * 65.88889 * 1 2 3 24 24 H 1.09002 * 109.46422 * 185.88616 * 1 2 3 25 25 H 1.08997 * 109.46884 * 305.88668 * 1 2 3 26 26 H 1.08996 * 109.47009 * 240.00429 * 2 1 3 27 27 H 1.09001 * 109.47363 * 120.00180 * 2 1 3 28 28 H 1.09002 * 109.46872 * 60.00007 * 7 6 4 29 29 H 1.08995 * 109.47566 * 300.00366 * 7 6 4 30 30 H 1.08998 * 109.47620 * 59.99155 * 9 8 7 31 31 H 1.08996 * 109.47134 * 179.97438 * 9 8 7 32 32 H 1.09003 * 109.47184 * 299.99014 * 9 8 7 33 33 H 1.09005 * 109.46796 * 59.99733 * 10 8 7 34 34 H 1.09000 * 109.47322 * 180.02562 * 10 8 7 35 35 H 1.09002 * 109.47296 * 300.00006 * 10 8 7 36 36 H 1.08995 * 109.47639 * 300.00492 * 11 8 7 37 37 H 1.09002 * 109.47405 * 60.00536 * 11 8 7 38 38 H 0.97002 * 119.99867 * 180.02562 * 15 14 12 39 39 H 1.08997 * 113.61211 * 203.67728 * 20 3 2 40 40 H 1.08998 * 113.61083 * 334.57760 * 20 3 2 41 41 H 1.09001 * 113.61328 * 270.88029 * 21 20 3 42 42 H 1.08998 * 113.60984 * 139.98208 * 21 20 3 43 43 H 1.08994 * 113.61378 * 220.02589 * 22 21 20 44 44 H 1.09000 * 113.61207 * 89.11423 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5564 2.2341 1.1877 5 8 0.9776 3.2814 1.0206 6 8 1.7688 1.7757 2.4313 7 6 1.2761 2.5906 3.5274 8 6 1.6081 1.9112 4.8574 9 6 0.9431 0.5342 4.9066 10 6 3.1244 1.7500 4.9833 11 6 1.0883 2.7695 6.0123 12 6 1.4158 2.1006 7.3224 13 1 1.9424 1.1577 7.3305 14 6 1.0432 2.6923 8.5108 15 7 0.4025 3.8407 8.5009 16 14 1.4498 1.8634 10.1347 17 1 2.7790 2.3268 10.6078 18 1 0.4162 2.2137 11.1417 19 1 1.4776 0.3908 9.9455 20 6 3.5533 1.5630 -0.2458 21 6 3.2250 1.6230 -1.7470 22 6 1.8438 2.1653 -1.3432 23 1 -0.3634 0.4198 -0.9380 24 1 -0.3632 -1.0223 0.1054 25 1 -0.3633 0.6024 0.8326 26 1 1.8934 -0.5138 -0.8900 27 1 1.8935 -0.5139 0.8900 28 1 0.1958 2.7051 3.4379 29 1 1.7495 3.5718 3.4921 30 1 1.3130 -0.0776 4.0838 31 1 1.1800 0.0499 5.8539 32 1 -0.1371 0.6489 4.8170 33 1 3.5981 2.7311 4.9482 34 1 3.3609 1.2656 5.9306 35 1 3.4943 1.1383 4.1605 36 1 1.5617 3.7507 5.9775 37 1 0.0081 2.8840 5.9225 38 1 0.1406 4.2572 9.3370 39 1 3.9868 2.4842 0.1435 40 1 4.1146 0.6745 0.0433 41 1 3.1871 0.6441 -2.2251 42 1 3.8320 2.3412 -2.2982 43 1 1.0253 1.7630 -1.9399 44 1 1.8102 3.2511 -1.2539 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000195063942.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:52 Heat of formation + Delta-G solvation = -100.951583 kcal Electronic energy + Delta-G solvation = -21535.275113 eV Core-core repulsion = 18452.308277 eV Total energy + Delta-G solvation = -3082.966836 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.93617 -38.76694 -36.90370 -35.31354 -32.62848 -32.30406 -27.75648 -26.94180 -26.39302 -25.95508 -25.75230 -23.32794 -22.81138 -21.28469 -18.75333 -18.12168 -17.16988 -16.53557 -16.19415 -16.12844 -15.32728 -14.55219 -14.34640 -14.21467 -13.70551 -13.38889 -13.11502 -12.82942 -12.61353 -12.34629 -12.28055 -12.05525 -11.86305 -11.68434 -11.42654 -11.24516 -11.13595 -10.96122 -10.82621 -10.58907 -10.58297 -10.47199 -10.34508 -10.23733 -10.21438 -9.96186 -9.71262 -9.18030 -8.93288 -8.36225 -6.00377 -4.01505 2.42696 2.99244 3.31661 3.38391 3.41007 4.17328 4.27332 4.44896 4.49133 4.54193 4.90970 5.08256 5.19228 5.29330 5.35318 5.44421 5.53499 5.53961 5.56313 5.59089 5.67876 5.69825 5.80719 5.83768 5.85790 6.03249 6.06321 6.12243 6.21254 6.21564 6.40445 6.53093 6.67258 6.72370 6.88554 7.12116 7.13273 7.15495 7.61723 7.73707 7.97942 8.05852 8.40501 9.02889 9.61559 11.11344 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.037011 B = 0.003920 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.356525 B = 7140.267573 C = 7197.504751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.096 4.096 3 C -0.080 4.080 4 C 0.471 3.529 5 O -0.515 6.515 6 O -0.346 6.346 7 C 0.077 3.923 8 C -0.058 4.058 9 C -0.125 4.125 10 C -0.125 4.125 11 C 0.035 3.965 12 C -0.509 4.509 13 H 0.061 0.939 14 C 0.056 3.944 15 N -0.896 5.896 16 Si 0.890 3.110 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C -0.121 4.121 21 C -0.140 4.140 22 C -0.117 4.117 23 H 0.056 0.944 24 H 0.061 0.939 25 H 0.054 0.946 26 H 0.075 0.925 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.039 0.961 31 H 0.065 0.935 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.065 0.935 35 H 0.039 0.961 36 H 0.018 0.982 37 H 0.018 0.982 38 H 0.260 0.740 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.477 -7.383 -19.187 21.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.133 4.133 3 C -0.081 4.081 4 C 0.314 3.686 5 O -0.404 6.404 6 O -0.262 6.262 7 C 0.004 3.996 8 C -0.058 4.058 9 C -0.182 4.182 10 C -0.182 4.182 11 C -0.003 4.003 12 C -0.547 4.547 13 H 0.079 0.921 14 C -0.145 4.145 15 N -0.535 5.535 16 Si 0.718 3.282 17 H -0.207 1.207 18 H -0.213 1.213 19 H -0.199 1.199 20 C -0.158 4.158 21 C -0.177 4.177 22 C -0.154 4.154 23 H 0.075 0.925 24 H 0.080 0.920 25 H 0.073 0.927 26 H 0.094 0.906 27 H 0.099 0.901 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.084 0.916 35 H 0.058 0.942 36 H 0.036 0.964 37 H 0.036 0.964 38 H 0.070 0.930 39 H 0.104 0.896 40 H 0.100 0.900 41 H 0.103 0.897 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 4.213 -6.933 -19.063 20.717 hybrid contribution -0.019 -0.036 1.135 1.136 sum 4.194 -6.970 -17.928 19.687 Atomic orbital electron populations 1.21791 0.95205 1.02148 1.02076 1.21311 0.96387 0.92205 1.03400 1.21982 0.98361 0.96651 0.91118 1.23372 0.76016 0.84435 0.84795 1.90630 1.39122 1.23891 1.86717 1.86502 1.73028 1.51722 1.14923 1.23479 0.98729 0.93537 0.83820 1.20792 0.96466 0.96866 0.91667 1.21703 0.99311 0.96059 1.01144 1.21708 0.94761 1.00646 1.01120 1.19124 0.96237 0.94268 0.90625 1.21156 1.36565 1.06652 0.90364 0.92084 1.25015 0.95319 0.94991 0.99191 1.69970 1.39755 1.16960 1.26838 0.86617 0.78018 0.79815 0.83702 1.20728 1.21319 1.19857 1.22933 0.93093 1.03349 0.96450 1.22838 0.97084 1.01730 0.96074 1.22961 0.97807 1.01267 0.93389 0.92527 0.92000 0.92694 0.90594 0.90149 0.91829 0.91833 0.94203 0.91613 0.93842 0.93843 0.91616 0.94194 0.96406 0.96386 0.93027 0.89565 0.90048 0.89696 0.90829 0.90576 0.88792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.64 37.16 0.36 -1.23 16 2 C -0.10 -0.93 5.25 -26.73 -0.14 -1.07 16 3 C -0.08 -0.91 0.91 -154.84 -0.14 -1.05 16 4 C 0.47 7.43 5.78 36.00 0.21 7.64 16 5 O -0.51 -9.57 15.70 -18.75 -0.29 -9.87 16 6 O -0.35 -5.88 8.81 -39.27 -0.35 -6.22 16 7 C 0.08 1.48 4.32 37.16 0.16 1.64 16 8 C -0.06 -1.18 0.61 -154.51 -0.09 -1.28 16 9 C -0.12 -2.40 8.08 37.15 0.30 -2.10 16 10 C -0.13 -2.40 8.08 37.16 0.30 -2.10 16 11 C 0.03 0.87 4.04 -27.89 -0.11 0.76 16 12 C -0.51 -13.80 7.65 -34.44 -0.26 -14.07 16 13 H 0.06 1.60 5.68 -52.48 -0.30 1.30 16 14 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 15 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 16 Si 0.89 21.39 29.54 -169.99 -5.02 16.37 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 19 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 20 C -0.12 -1.16 7.22 -25.91 -0.19 -1.35 16 21 C -0.14 -1.09 7.73 -25.92 -0.20 -1.29 16 22 C -0.12 -1.16 6.83 -25.92 -0.18 -1.34 16 23 H 0.06 0.53 7.35 -51.93 -0.38 0.14 16 24 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.69 7.17 -51.93 -0.37 0.32 16 26 H 0.08 0.57 7.30 -51.93 -0.38 0.19 16 27 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.06 1.25 8.13 -51.93 -0.42 0.82 16 29 H 0.06 1.25 8.13 -51.93 -0.42 0.82 16 30 H 0.04 0.68 7.68 -51.93 -0.40 0.28 16 31 H 0.06 1.32 6.62 -51.93 -0.34 0.98 16 32 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.06 1.32 6.62 -51.93 -0.34 0.97 16 35 H 0.04 0.68 7.68 -51.93 -0.40 0.28 16 36 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.09 0.89 8.09 -51.93 -0.42 0.47 16 40 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 41 H 0.08 0.54 7.60 -51.93 -0.39 0.14 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.08 0.68 7.28 -51.93 -0.38 0.30 16 44 H 0.09 1.08 7.51 -51.93 -0.39 0.68 16 LS Contribution 346.53 15.07 5.22 5.22 Total: -1.00 -30.40 346.53 -7.65 -38.05 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -7.86 Total: -2.25 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: -0.09 Total: -15.36 kcal Atomic # 7 Polarization: -26.69 SS G_CDS: 0.74 Total: -25.95 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -0.64 Total: -16.09 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.40 -7.65 -38.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195063942.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.900 kcal (2) G-P(sol) polarization free energy of solvation -30.403 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds