Wall clock time and date at job start Mon Mar 30 2020 07:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53002 * 109.46495 * 2 1 4 4 C 1.50697 * 112.85077 * 58.78689 * 3 2 1 5 5 O 1.20820 * 120.00196 * 234.49933 * 4 3 2 6 6 O 1.34233 * 120.00049 * 54.49920 * 4 3 2 7 7 C 1.45197 * 117.00113 * 179.97438 * 6 4 3 8 8 C 1.53002 * 109.47413 * 179.97438 * 7 6 4 9 9 C 1.52993 * 109.47211 * 300.00881 * 8 7 6 10 10 C 1.53005 * 109.46741 * 60.00332 * 8 7 6 11 11 C 1.52991 * 109.47249 * 180.02562 * 8 7 6 12 12 C 1.50701 * 109.47401 * 180.02562 * 11 8 7 13 13 H 1.08003 * 119.99685 * 0.02562 * 12 11 8 14 14 C 1.37876 * 120.00674 * 180.02562 * 12 11 8 15 15 N 1.31516 * 119.99426 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00409 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.47173 * 89.99664 * 16 14 12 18 18 H 1.48501 * 109.47195 * 209.99831 * 16 14 12 19 19 H 1.48500 * 109.47154 * 330.00018 * 16 14 12 20 20 C 1.53790 * 113.68751 * 190.05200 * 3 2 1 21 21 C 1.53782 * 87.07831 * 89.12982 * 20 3 2 22 22 C 1.53781 * 87.08501 * 25.43229 * 21 20 3 23 23 H 1.08999 * 109.47263 * 65.88889 * 1 2 3 24 24 H 1.09002 * 109.46422 * 185.88616 * 1 2 3 25 25 H 1.08997 * 109.46884 * 305.88668 * 1 2 3 26 26 H 1.08996 * 109.47009 * 240.00429 * 2 1 3 27 27 H 1.09001 * 109.47363 * 120.00180 * 2 1 3 28 28 H 1.09002 * 109.46872 * 60.00007 * 7 6 4 29 29 H 1.08995 * 109.47566 * 300.00366 * 7 6 4 30 30 H 1.08998 * 109.47620 * 59.99155 * 9 8 7 31 31 H 1.08996 * 109.47134 * 179.97438 * 9 8 7 32 32 H 1.09003 * 109.47184 * 299.99014 * 9 8 7 33 33 H 1.09005 * 109.46796 * 59.99733 * 10 8 7 34 34 H 1.09000 * 109.47322 * 180.02562 * 10 8 7 35 35 H 1.09002 * 109.47296 * 300.00006 * 10 8 7 36 36 H 1.08995 * 109.47639 * 300.00492 * 11 8 7 37 37 H 1.09002 * 109.47405 * 60.00536 * 11 8 7 38 38 H 0.97002 * 119.99867 * 180.02562 * 15 14 12 39 39 H 1.08997 * 113.61211 * 203.67728 * 20 3 2 40 40 H 1.08998 * 113.61083 * 334.57760 * 20 3 2 41 41 H 1.09001 * 113.61328 * 270.88029 * 21 20 3 42 42 H 1.08998 * 113.60984 * 139.98208 * 21 20 3 43 43 H 1.08994 * 113.61378 * 220.02589 * 22 21 20 44 44 H 1.09000 * 113.61207 * 89.11423 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5564 2.2341 1.1877 5 8 0.9776 3.2814 1.0206 6 8 1.7688 1.7757 2.4313 7 6 1.2761 2.5906 3.5274 8 6 1.6081 1.9112 4.8574 9 6 0.9431 0.5342 4.9066 10 6 3.1244 1.7500 4.9833 11 6 1.0883 2.7695 6.0123 12 6 1.4158 2.1006 7.3224 13 1 1.9424 1.1577 7.3305 14 6 1.0432 2.6923 8.5108 15 7 0.4025 3.8407 8.5009 16 14 1.4498 1.8634 10.1347 17 1 2.7790 2.3268 10.6078 18 1 0.4162 2.2137 11.1417 19 1 1.4776 0.3908 9.9455 20 6 3.5533 1.5630 -0.2458 21 6 3.2250 1.6230 -1.7470 22 6 1.8438 2.1653 -1.3432 23 1 -0.3634 0.4198 -0.9380 24 1 -0.3632 -1.0223 0.1054 25 1 -0.3633 0.6024 0.8326 26 1 1.8934 -0.5138 -0.8900 27 1 1.8935 -0.5139 0.8900 28 1 0.1958 2.7051 3.4379 29 1 1.7495 3.5718 3.4921 30 1 1.3130 -0.0776 4.0838 31 1 1.1800 0.0499 5.8539 32 1 -0.1371 0.6489 4.8170 33 1 3.5981 2.7311 4.9482 34 1 3.3609 1.2656 5.9306 35 1 3.4943 1.1383 4.1605 36 1 1.5617 3.7507 5.9775 37 1 0.0081 2.8840 5.9225 38 1 0.1406 4.2572 9.3370 39 1 3.9868 2.4842 0.1435 40 1 4.1146 0.6745 0.0433 41 1 3.1871 0.6441 -2.2251 42 1 3.8320 2.3412 -2.2982 43 1 1.0253 1.7630 -1.9399 44 1 1.8102 3.2511 -1.2539 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195063942.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:59:51 Heat of formation + Delta-G solvation = -115.911866 kcal Electronic energy + Delta-G solvation = -21535.923840 eV Core-core repulsion = 18452.308277 eV Total energy + Delta-G solvation = -3083.615563 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 268.183 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.07694 -39.90184 -38.43184 -36.86856 -34.42623 -33.36301 -29.46331 -28.50532 -27.98274 -27.15838 -26.59170 -25.04973 -23.89979 -22.38937 -20.06306 -19.55139 -18.45285 -18.23470 -17.60641 -17.49582 -16.52231 -16.16423 -15.58600 -15.25171 -15.07685 -14.84596 -14.58501 -14.12718 -13.96420 -13.80796 -13.53134 -13.37238 -12.97943 -12.75776 -12.74227 -12.67875 -12.46214 -12.34617 -12.28191 -12.19625 -11.98075 -11.96070 -11.85799 -11.40353 -11.32541 -11.26593 -11.18024 -10.96773 -10.84977 -10.54073 -8.16864 -6.25171 1.17023 1.42138 1.42953 1.53600 1.70956 2.43511 3.17682 3.33234 3.45330 3.68574 3.81308 3.86830 3.89708 3.91822 4.18762 4.34464 4.40676 4.46722 4.55479 4.55977 4.71849 4.75948 4.79516 4.83845 4.98670 4.99747 5.04309 5.05848 5.09771 5.10867 5.13988 5.26276 5.34538 5.40102 5.42748 5.45225 5.48556 5.51521 5.53665 5.71832 5.85452 6.26167 6.73545 6.88621 7.42723 8.96010 Molecular weight = 268.18amu Principal moments of inertia in cm(-1) A = 0.037011 B = 0.003920 C = 0.003889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 756.356525 B = 7140.267573 C = 7197.504751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.092 4.092 3 C -0.085 4.085 4 C 0.466 3.534 5 O -0.550 6.550 6 O -0.341 6.341 7 C 0.088 3.912 8 C -0.054 4.054 9 C -0.117 4.117 10 C -0.118 4.118 11 C 0.040 3.960 12 C -0.515 4.515 13 H 0.073 0.927 14 C -0.004 4.004 15 N -0.939 5.939 16 Si 0.961 3.039 17 H -0.274 1.274 18 H -0.288 1.288 19 H -0.259 1.259 20 C -0.122 4.122 21 C -0.121 4.121 22 C -0.122 4.122 23 H 0.064 0.936 24 H 0.077 0.923 25 H 0.020 0.980 26 H 0.110 0.890 27 H 0.077 0.923 28 H 0.050 0.950 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.036 0.964 33 H 0.036 0.964 34 H 0.057 0.943 35 H 0.067 0.933 36 H -0.012 1.012 37 H -0.013 1.013 38 H 0.261 0.739 39 H 0.071 0.929 40 H 0.099 0.901 41 H 0.111 0.889 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.047 -10.137 -20.661 23.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.129 4.129 3 C -0.086 4.086 4 C 0.311 3.689 5 O -0.441 6.441 6 O -0.257 6.257 7 C 0.014 3.986 8 C -0.054 4.054 9 C -0.174 4.174 10 C -0.175 4.175 11 C 0.003 3.997 12 C -0.553 4.553 13 H 0.091 0.909 14 C -0.201 4.201 15 N -0.580 5.580 16 Si 0.786 3.214 17 H -0.200 1.200 18 H -0.214 1.214 19 H -0.183 1.183 20 C -0.160 4.160 21 C -0.158 4.158 22 C -0.159 4.159 23 H 0.083 0.917 24 H 0.096 0.904 25 H 0.040 0.960 26 H 0.129 0.871 27 H 0.095 0.905 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.006 0.994 37 H 0.006 0.994 38 H 0.070 0.930 39 H 0.090 0.910 40 H 0.117 0.883 41 H 0.130 0.870 42 H 0.102 0.898 43 H 0.107 0.893 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.798 -9.708 -20.555 23.460 hybrid contribution -0.547 0.876 1.515 1.834 sum 5.251 -8.832 -19.039 21.635 Atomic orbital electron populations 1.21816 0.95927 1.02499 1.01108 1.21372 0.95698 0.90863 1.04931 1.22355 0.99888 0.97283 0.89052 1.24521 0.74916 0.84409 0.85060 1.90614 1.40798 1.25728 1.86951 1.86498 1.72951 1.51102 1.15143 1.23081 0.97852 0.93201 0.84489 1.20613 0.97603 0.96757 0.90420 1.21623 0.98855 0.95206 1.01764 1.21632 0.93318 1.00774 1.01778 1.18982 0.94153 0.93814 0.92750 1.21532 1.35908 1.06908 0.90975 0.90909 1.25960 0.95222 0.95574 1.03304 1.70123 1.41277 1.18752 1.27815 0.85492 0.77757 0.79359 0.78748 1.19997 1.21363 1.18300 1.23001 0.91488 1.03525 0.97960 1.22827 0.94913 1.03171 0.94846 1.23003 1.00102 0.99992 0.92825 0.91688 0.90449 0.96033 0.87122 0.90459 0.93139 0.93045 0.91449 0.92413 0.94525 0.94464 0.92368 0.91439 0.99408 0.99417 0.93042 0.90988 0.88264 0.87034 0.89809 0.89308 0.91061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.90 9.64 71.98 0.69 -2.21 16 2 C -0.09 -1.49 5.25 30.60 0.16 -1.33 16 3 C -0.08 -1.77 0.91 -52.40 -0.05 -1.82 16 4 C 0.47 14.71 5.78 71.23 0.41 15.12 16 5 O -0.55 -21.19 15.70 21.98 0.35 -20.85 16 6 O -0.34 -11.50 8.81 -51.45 -0.45 -11.95 16 7 C 0.09 3.47 4.32 71.98 0.31 3.78 16 8 C -0.05 -2.23 0.61 -52.18 -0.03 -2.27 16 9 C -0.12 -4.42 8.08 71.98 0.58 -3.84 16 10 C -0.12 -4.43 8.08 71.98 0.58 -3.85 16 11 C 0.04 2.12 4.04 29.85 0.12 2.24 16 12 C -0.52 -28.30 7.65 25.60 0.20 -28.10 16 13 H 0.07 3.76 5.68 -2.91 -0.02 3.74 16 14 C 0.00 -0.21 5.46 84.65 0.46 0.26 16 15 N -0.94 -57.56 13.29 21.45 0.28 -57.28 16 16 Si 0.96 43.96 29.54 68.60 2.03 45.99 16 17 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 18 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 19 H -0.26 -11.14 7.11 99.48 0.71 -10.44 16 20 C -0.12 -2.02 7.22 31.12 0.22 -1.79 16 21 C -0.12 -1.43 7.73 31.12 0.24 -1.19 16 22 C -0.12 -2.20 6.83 31.12 0.21 -1.98 16 23 H 0.06 1.07 7.35 -2.39 -0.02 1.06 16 24 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 25 H 0.02 0.53 7.17 -2.39 -0.02 0.51 16 26 H 0.11 1.10 7.30 -2.39 -0.02 1.08 16 27 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.05 2.10 8.13 -2.39 -0.02 2.08 16 29 H 0.05 2.13 8.13 -2.39 -0.02 2.11 16 30 H 0.07 2.16 7.68 -2.39 -0.02 2.14 16 31 H 0.06 2.26 6.62 -2.39 -0.02 2.24 16 32 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 34 H 0.06 2.26 6.62 -2.39 -0.02 2.25 16 35 H 0.07 2.15 7.68 -2.39 -0.02 2.14 16 36 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 37 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 38 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 39 H 0.07 1.39 8.09 -2.39 -0.02 1.38 16 40 H 0.10 1.30 8.10 -2.39 -0.02 1.28 16 41 H 0.11 0.80 7.60 -2.39 -0.02 0.78 16 42 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 43 H 0.09 1.36 7.28 -2.39 -0.02 1.34 16 44 H 0.07 1.62 7.51 -2.39 -0.02 1.60 16 Total: -1.00 -67.97 346.53 7.27 -60.70 By element: Atomic # 1 Polarization: 9.44 SS G_CDS: 0.95 Total: 10.38 kcal Atomic # 6 Polarization: -31.11 SS G_CDS: 4.12 Total: -26.99 kcal Atomic # 7 Polarization: -57.56 SS G_CDS: 0.28 Total: -57.28 kcal Atomic # 8 Polarization: -32.69 SS G_CDS: -0.11 Total: -32.80 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -67.97 7.27 -60.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195063942.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.211 kcal (2) G-P(sol) polarization free energy of solvation -67.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds