Wall clock time and date at job start Mon Mar 30 2020 06:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46500 * 109.47473 * 239.99627 * 2 1 3 5 5 C 1.35045 * 126.39543 * 60.02405 * 4 2 1 6 6 N 1.30496 * 108.69844 * 180.02562 * 5 4 2 7 7 C 1.34120 * 109.25917 * 359.97438 * 6 5 4 8 8 C 1.34670 * 108.01964 * 359.73081 * 7 6 5 9 9 C 1.50699 * 126.59506 * 180.28113 * 8 7 6 10 10 O 1.42907 * 109.46807 * 5.16558 * 9 8 7 11 11 Si 1.63103 * 113.99943 * 209.99835 * 10 9 8 12 12 C 1.86294 * 109.46879 * 60.00457 * 11 10 9 13 13 C 1.86299 * 109.46691 * 180.02562 * 11 10 9 14 14 C 1.86299 * 109.47106 * 300.00152 * 11 10 9 15 15 C 1.50698 * 109.47144 * 125.16511 * 9 8 7 16 16 N 1.27954 * 119.99565 * 130.00539 * 15 9 8 17 17 Si 1.86793 * 120.00154 * 310.00282 * 15 9 8 18 18 H 1.48501 * 109.47276 * 359.97438 * 17 15 9 19 19 H 1.48497 * 109.47197 * 120.00198 * 17 15 9 20 20 H 1.48503 * 109.47200 * 239.99615 * 17 15 9 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 24 24 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 25 25 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 26 26 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 28 28 H 1.08007 * 125.64809 * 359.96939 * 5 4 2 29 29 H 1.08000 * 125.99367 * 180.02562 * 7 6 5 30 30 H 1.09002 * 109.47529 * 245.17033 * 9 8 7 31 31 H 1.09000 * 109.47581 * 59.99980 * 12 11 10 32 32 H 1.09000 * 109.46941 * 180.02562 * 12 11 10 33 33 H 1.08998 * 109.47140 * 299.99191 * 12 11 10 34 34 H 1.08998 * 109.47310 * 60.00687 * 13 11 10 35 35 H 1.09000 * 109.46652 * 180.02562 * 13 11 10 36 36 H 1.09000 * 109.47163 * 299.99649 * 13 11 10 37 37 H 1.08999 * 109.47019 * 60.00312 * 14 11 10 38 38 H 1.09000 * 109.47082 * 179.97438 * 14 11 10 39 39 H 1.08995 * 109.47333 * 300.00101 * 14 11 10 40 40 H 0.96997 * 119.99910 * 359.97438 * 16 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 1.7735 -0.3435 -2.4780 6 7 2.3744 -1.1945 -3.2639 7 6 3.0183 -2.1057 -2.5197 8 6 2.8134 -1.8046 -1.2231 9 6 3.3522 -2.5527 -0.0311 10 8 4.2321 -3.5872 -0.4759 11 14 4.2745 -4.8895 0.5052 12 6 2.5701 -5.6317 0.6260 13 6 5.4546 -6.1524 -0.1898 14 6 4.8478 -4.3714 2.2004 15 6 4.1067 -1.6005 0.8605 16 7 3.8566 -1.5644 2.1148 17 14 5.4070 -0.4729 0.1345 18 1 5.5053 -0.7081 -1.3284 19 1 5.0311 0.9417 0.3848 20 1 6.7188 -0.7563 0.7703 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 1.8934 -0.5137 0.8900 25 1 1.6767 1.9563 0.8899 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.1781 0.4983 -2.7994 29 1 3.6029 -2.9328 -2.8943 30 1 2.5252 -2.9936 0.5255 31 1 2.2346 -5.9349 -0.3658 32 1 2.5983 -6.5017 1.2820 33 1 1.8799 -4.8927 1.0329 34 1 6.4518 -5.7179 -0.2601 35 1 5.4826 -7.0228 0.4656 36 1 5.1195 -6.4556 -1.1817 37 1 4.1576 -3.6323 2.6072 38 1 4.8757 -5.2415 2.8562 39 1 5.8450 -3.9371 2.1297 40 1 3.1812 -2.1497 2.4917 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000203516882.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:29 Heat of formation + Delta-G solvation = 4.829226 kcal Electronic energy + Delta-G solvation = -20114.818391 eV Core-core repulsion = 17282.448919 eV Total energy + Delta-G solvation = -2832.369472 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.143 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -43.21713 -39.28490 -37.19760 -35.92025 -32.26124 -30.90563 -29.68615 -28.67078 -28.55465 -28.52752 -27.15957 -24.13600 -22.54291 -21.97670 -20.62030 -18.35252 -18.12640 -17.74824 -16.12576 -16.10125 -16.00600 -15.85423 -15.06895 -14.53380 -14.40020 -14.29316 -14.21902 -14.05215 -13.95967 -13.60127 -13.46160 -13.38929 -13.27418 -13.23767 -13.04608 -13.03449 -12.80100 -12.57591 -12.42448 -12.01614 -11.92554 -11.45236 -10.96902 -10.87336 -10.74272 -10.53417 -10.24960 -9.21247 0.42584 1.01298 1.08769 1.22196 1.63577 1.67800 1.70167 1.80874 1.86364 1.93003 2.29088 2.35000 3.32616 3.37737 3.53049 3.65316 3.77623 3.79542 3.84953 4.30913 4.32533 4.34285 4.39822 4.50250 4.51395 4.55969 4.59258 4.61075 4.62989 4.66285 4.68142 4.81165 4.84689 4.93825 5.06735 5.33456 5.42307 5.43583 5.52356 5.86233 6.26673 6.52251 7.21982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.119 3.881 3 C -0.172 4.172 4 N -0.448 5.448 5 C 0.195 3.805 6 N -0.494 5.494 7 C 0.021 3.979 8 C -0.049 4.049 9 C 0.185 3.815 10 O -0.601 6.601 11 Si 1.252 2.748 12 C -0.509 4.509 13 C -0.463 4.463 14 C -0.514 4.514 15 C -0.053 4.053 16 N -0.603 5.603 17 Si 1.051 2.949 18 H -0.233 1.233 19 H -0.245 1.245 20 H -0.243 1.243 21 H 0.064 0.936 22 H 0.070 0.930 23 H 0.080 0.920 24 H 0.094 0.906 25 H 0.081 0.919 26 H 0.069 0.931 27 H 0.071 0.929 28 H 0.205 0.795 29 H 0.177 0.823 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.325 0.675 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.659 0.873 2.581 3.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.016 3.984 3 C -0.229 4.229 4 N -0.134 5.134 5 C -0.086 4.086 6 N -0.211 5.211 7 C -0.128 4.128 8 C -0.163 4.163 9 C 0.124 3.876 10 O -0.557 6.557 11 Si 1.390 2.610 12 C -0.611 4.611 13 C -0.570 4.570 14 C -0.616 4.616 15 C -0.299 4.299 16 N -0.218 5.218 17 Si 0.864 3.136 18 H -0.155 1.155 19 H -0.169 1.169 20 H -0.167 1.167 21 H 0.083 0.917 22 H 0.089 0.911 23 H 0.099 0.901 24 H 0.112 0.888 25 H 0.100 0.900 26 H 0.088 0.912 27 H 0.090 0.910 28 H 0.221 0.779 29 H 0.194 0.806 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.095 0.905 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -0.684 2.141 2.107 3.081 hybrid contribution -1.418 -1.618 1.353 2.541 sum -2.103 0.523 3.460 4.082 Atomic orbital electron populations 1.22189 0.92604 1.03392 1.03920 1.21590 0.95971 0.94501 0.86341 1.22330 1.02835 0.93760 1.04017 1.45525 1.37990 1.21871 1.07997 1.24909 1.03348 1.01828 0.78545 1.70417 1.12438 1.05060 1.33205 1.22138 1.02163 1.00343 0.88161 1.20554 1.04286 0.94183 0.97299 1.19731 0.90104 0.87115 0.90654 1.85348 1.63839 1.39225 1.67307 0.77334 0.66204 0.58088 0.59399 1.26974 1.20997 1.07989 1.05159 1.26234 1.11497 1.11796 1.07437 1.27253 1.07063 1.06096 1.21234 1.32477 1.03010 1.00511 0.93866 1.69567 1.16657 1.23195 1.12426 0.83746 0.74599 0.75487 0.79808 1.15529 1.16902 1.16690 0.91697 0.91091 0.90147 0.88789 0.89984 0.91214 0.91003 0.77854 0.80553 0.91072 0.90538 0.90502 0.91875 0.90452 0.90337 0.90433 0.91694 0.90506 0.90502 0.85509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 0.50 9.24 37.16 0.34 0.84 16 2 C 0.12 -0.22 3.23 -67.93 -0.22 -0.44 16 3 C -0.17 0.42 9.24 37.16 0.34 0.76 16 4 N -0.45 -0.13 2.62 -106.92 -0.28 -0.41 16 5 C 0.20 0.22 11.55 -90.38 -1.04 -0.82 16 6 N -0.49 -2.01 11.25 -14.67 -0.16 -2.17 16 7 C 0.02 0.07 11.22 -17.82 -0.20 -0.13 16 8 C -0.05 -0.07 4.83 -81.60 -0.39 -0.47 16 9 C 0.19 0.00 1.98 -29.04 -0.06 -0.05 16 10 O -0.60 0.04 7.40 -35.23 -0.26 -0.22 16 11 Si 1.25 -2.32 12.68 -169.99 -2.16 -4.48 16 12 C -0.51 0.67 8.56 101.05 0.87 1.53 16 13 C -0.46 0.63 8.65 101.05 0.87 1.50 16 14 C -0.51 0.53 7.98 101.05 0.81 1.33 16 15 C -0.05 -0.01 2.47 -13.89 -0.03 -0.05 16 16 N -0.60 0.08 11.58 56.23 0.65 0.73 16 17 Si 1.05 1.14 27.64 -169.99 -4.70 -3.56 16 18 H -0.23 -0.46 7.11 56.52 0.40 -0.06 16 19 H -0.24 -0.15 5.99 56.52 0.34 0.19 16 20 H -0.24 -0.34 7.11 56.52 0.40 0.06 16 21 H 0.06 -0.14 8.14 -51.93 -0.42 -0.56 16 22 H 0.07 -0.24 7.95 -51.93 -0.41 -0.65 16 23 H 0.08 -0.32 8.14 -51.93 -0.42 -0.75 16 24 H 0.09 -0.18 5.90 -51.93 -0.31 -0.49 16 25 H 0.08 -0.29 8.14 -51.93 -0.42 -0.71 16 26 H 0.07 -0.08 5.88 -51.93 -0.31 -0.38 16 27 H 0.07 -0.23 7.95 -51.93 -0.41 -0.64 16 28 H 0.20 -0.43 8.06 -52.48 -0.42 -0.85 16 29 H 0.18 0.38 7.88 -52.49 -0.41 -0.04 16 30 H 0.07 -0.12 5.88 -51.93 -0.31 -0.42 16 31 H 0.08 -0.06 7.96 -51.93 -0.41 -0.47 16 32 H 0.08 -0.12 7.96 -51.93 -0.41 -0.54 16 33 H 0.06 -0.09 7.10 -51.93 -0.37 -0.46 16 34 H 0.08 -0.09 7.96 -51.93 -0.41 -0.51 16 35 H 0.08 -0.15 7.96 -51.93 -0.41 -0.57 16 36 H 0.08 -0.10 7.96 -51.93 -0.41 -0.51 16 37 H 0.06 -0.07 4.71 -51.93 -0.24 -0.31 16 38 H 0.08 -0.11 7.96 -51.93 -0.41 -0.52 16 39 H 0.08 -0.02 7.96 -51.93 -0.41 -0.44 16 40 H 0.33 -0.55 7.11 -40.82 -0.29 -0.85 16 LS Contribution 320.92 15.07 4.84 4.84 Total: 0.00 -4.45 320.92 -7.29 -11.75 By element: Atomic # 1 Polarization: -3.96 SS G_CDS: -6.50 Total: -10.47 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 1.28 Total: 4.00 kcal Atomic # 7 Polarization: -2.06 SS G_CDS: 0.21 Total: -1.86 kcal Atomic # 8 Polarization: 0.04 SS G_CDS: -0.26 Total: -0.22 kcal Atomic # 14 Polarization: -1.19 SS G_CDS: -6.85 Total: -8.04 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -4.45 -7.29 -11.75 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203516882.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.575 kcal (2) G-P(sol) polarization free energy of solvation -4.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -11.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds