Wall clock time and date at job start Mon Mar 30 2020 06:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46500 * 109.47473 * 239.99627 * 2 1 3 5 5 C 1.35045 * 126.39543 * 60.02405 * 4 2 1 6 6 N 1.30496 * 108.69844 * 180.02562 * 5 4 2 7 7 C 1.34120 * 109.25917 * 359.97438 * 6 5 4 8 8 C 1.34670 * 108.01964 * 359.73081 * 7 6 5 9 9 C 1.50699 * 126.59506 * 180.28113 * 8 7 6 10 10 O 1.42907 * 109.46807 * 5.16558 * 9 8 7 11 11 Si 1.63103 * 113.99943 * 209.99835 * 10 9 8 12 12 C 1.86294 * 109.46879 * 60.00457 * 11 10 9 13 13 C 1.86299 * 109.46691 * 180.02562 * 11 10 9 14 14 C 1.86299 * 109.47106 * 300.00152 * 11 10 9 15 15 C 1.50698 * 109.47144 * 125.16511 * 9 8 7 16 16 N 1.27954 * 119.99565 * 130.00539 * 15 9 8 17 17 Si 1.86793 * 120.00154 * 310.00282 * 15 9 8 18 18 H 1.48501 * 109.47276 * 359.97438 * 17 15 9 19 19 H 1.48497 * 109.47197 * 120.00198 * 17 15 9 20 20 H 1.48503 * 109.47200 * 239.99615 * 17 15 9 21 21 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 23 23 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 24 24 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 25 25 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 26 26 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 27 27 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 28 28 H 1.08007 * 125.64809 * 359.96939 * 5 4 2 29 29 H 1.08000 * 125.99367 * 180.02562 * 7 6 5 30 30 H 1.09002 * 109.47529 * 245.17033 * 9 8 7 31 31 H 1.09000 * 109.47581 * 59.99980 * 12 11 10 32 32 H 1.09000 * 109.46941 * 180.02562 * 12 11 10 33 33 H 1.08998 * 109.47140 * 299.99191 * 12 11 10 34 34 H 1.08998 * 109.47310 * 60.00687 * 13 11 10 35 35 H 1.09000 * 109.46652 * 180.02562 * 13 11 10 36 36 H 1.09000 * 109.47163 * 299.99649 * 13 11 10 37 37 H 1.08999 * 109.47019 * 60.00312 * 14 11 10 38 38 H 1.09000 * 109.47082 * 179.97438 * 14 11 10 39 39 H 1.08995 * 109.47333 * 300.00101 * 14 11 10 40 40 H 0.96997 * 119.99910 * 359.97438 * 16 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 1.7735 -0.3435 -2.4780 6 7 2.3744 -1.1945 -3.2639 7 6 3.0183 -2.1057 -2.5197 8 6 2.8134 -1.8046 -1.2231 9 6 3.3522 -2.5527 -0.0311 10 8 4.2321 -3.5872 -0.4759 11 14 4.2745 -4.8895 0.5052 12 6 2.5701 -5.6317 0.6260 13 6 5.4546 -6.1524 -0.1898 14 6 4.8478 -4.3714 2.2004 15 6 4.1067 -1.6005 0.8605 16 7 3.8566 -1.5644 2.1148 17 14 5.4070 -0.4729 0.1345 18 1 5.5053 -0.7081 -1.3284 19 1 5.0311 0.9417 0.3848 20 1 6.7188 -0.7563 0.7703 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3634 0.5139 0.8900 24 1 1.8934 -0.5137 0.8900 25 1 1.6767 1.9563 0.8899 26 1 3.1300 1.4425 0.0005 27 1 1.6767 1.9564 -0.8900 28 1 1.1781 0.4983 -2.7994 29 1 3.6029 -2.9328 -2.8943 30 1 2.5252 -2.9936 0.5255 31 1 2.2346 -5.9349 -0.3658 32 1 2.5983 -6.5017 1.2820 33 1 1.8799 -4.8927 1.0329 34 1 6.4518 -5.7179 -0.2601 35 1 5.4826 -7.0228 0.4656 36 1 5.1195 -6.4556 -1.1817 37 1 4.1576 -3.6323 2.6072 38 1 4.8757 -5.2415 2.8562 39 1 5.8450 -3.9371 2.1297 40 1 3.1812 -2.1497 2.4917 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000203516882.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:28 Heat of formation + Delta-G solvation = 14.720351 kcal Electronic energy + Delta-G solvation = -20114.389479 eV Core-core repulsion = 17282.448919 eV Total energy + Delta-G solvation = -2831.940560 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.143 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.26742 -39.27590 -37.11046 -35.90431 -32.27827 -30.91099 -29.58092 -28.56585 -28.44295 -28.29691 -27.18856 -24.07652 -22.56742 -22.02290 -20.60664 -18.30532 -18.08634 -17.74471 -16.11891 -16.09850 -15.98308 -15.81202 -15.01033 -14.50860 -14.34437 -14.24843 -14.10702 -13.99035 -13.88160 -13.52835 -13.27332 -13.19461 -13.17567 -13.13840 -13.00042 -12.96249 -12.75123 -12.45657 -12.27874 -12.14604 -11.87134 -11.44670 -11.02987 -10.79395 -10.72377 -10.57709 -10.24455 -9.29717 0.41833 0.97118 1.03436 1.27512 1.52731 1.61322 1.80497 1.82451 1.86009 2.00052 2.21237 2.39194 3.39364 3.48407 3.54386 3.80155 3.88428 3.89152 3.97860 4.30052 4.39640 4.57119 4.61191 4.62402 4.65175 4.69088 4.72184 4.73637 4.74922 4.77751 4.78680 4.85487 5.00445 5.15913 5.17424 5.40759 5.45891 5.53041 5.60420 5.76760 6.26306 6.57196 7.12691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.115 3.885 3 C -0.172 4.172 4 N -0.445 5.445 5 C 0.196 3.804 6 N -0.534 5.534 7 C -0.007 4.007 8 C -0.046 4.046 9 C 0.184 3.816 10 O -0.614 6.614 11 Si 1.285 2.715 12 C -0.515 4.515 13 C -0.474 4.474 14 C -0.521 4.521 15 C -0.049 4.049 16 N -0.602 5.602 17 Si 1.049 2.951 18 H -0.252 1.252 19 H -0.237 1.237 20 H -0.250 1.250 21 H 0.056 0.944 22 H 0.076 0.924 23 H 0.094 0.906 24 H 0.096 0.904 25 H 0.096 0.904 26 H 0.054 0.946 27 H 0.080 0.920 28 H 0.232 0.768 29 H 0.174 0.826 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.066 0.934 34 H 0.073 0.927 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.598 1.264 3.728 4.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.013 3.987 3 C -0.230 4.230 4 N -0.129 5.129 5 C -0.086 4.086 6 N -0.252 5.252 7 C -0.155 4.155 8 C -0.162 4.162 9 C 0.122 3.878 10 O -0.570 6.570 11 Si 1.421 2.579 12 C -0.616 4.616 13 C -0.580 4.580 14 C -0.622 4.622 15 C -0.296 4.296 16 N -0.219 5.219 17 Si 0.864 3.136 18 H -0.175 1.175 19 H -0.161 1.161 20 H -0.174 1.174 21 H 0.075 0.925 22 H 0.095 0.905 23 H 0.113 0.887 24 H 0.114 0.886 25 H 0.115 0.885 26 H 0.073 0.927 27 H 0.099 0.901 28 H 0.248 0.752 29 H 0.191 0.809 30 H 0.109 0.891 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.104 0.896 36 H 0.093 0.907 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -1.620 2.540 3.273 4.449 hybrid contribution -1.106 -1.729 1.002 2.283 sum -2.725 0.812 4.275 5.135 Atomic orbital electron populations 1.22179 0.91413 1.03183 1.04932 1.21798 0.96864 0.94633 0.85411 1.22354 1.01888 0.93516 1.05209 1.45683 1.37346 1.21422 1.08498 1.25404 1.02748 1.01799 0.78634 1.70352 1.13903 1.06289 1.34699 1.22226 1.03256 1.00936 0.89100 1.20732 1.03865 0.94364 0.97193 1.19823 0.90606 0.87144 0.90191 1.85350 1.64012 1.39665 1.67966 0.76768 0.65521 0.57116 0.58471 1.27029 1.21261 1.08378 1.04969 1.26357 1.11621 1.12476 1.07580 1.27328 1.06658 1.06365 1.21877 1.32131 1.02907 1.00486 0.94030 1.69515 1.16894 1.23346 1.12148 0.83705 0.74867 0.76397 0.78634 1.17540 1.16057 1.17359 0.92483 0.90541 0.88693 0.88629 0.88531 0.92669 0.90143 0.75178 0.80899 0.89133 0.91129 0.90022 0.91470 0.90743 0.89637 0.90692 0.91544 0.89934 0.91266 0.84290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 1.18 9.24 71.98 0.67 1.85 16 2 C 0.11 -0.52 3.23 44.99 0.15 -0.38 16 3 C -0.17 1.01 9.24 71.98 0.67 1.67 16 4 N -0.44 -0.28 2.62 -492.17 -1.29 -1.56 16 5 C 0.20 0.49 11.55 180.26 2.08 2.57 16 6 N -0.53 -5.06 11.25 -200.31 -2.25 -7.31 16 7 C -0.01 -0.06 11.22 83.53 0.94 0.88 16 8 C -0.05 -0.17 4.83 40.95 0.20 0.03 16 9 C 0.18 0.04 1.98 29.10 0.06 0.09 16 10 O -0.61 -0.33 7.40 -148.98 -1.10 -1.43 16 11 Si 1.28 -4.63 12.68 68.60 0.87 -3.76 16 12 C -0.51 1.53 8.56 113.37 0.97 2.50 16 13 C -0.47 1.06 8.65 113.37 0.98 2.04 16 14 C -0.52 1.24 7.98 113.37 0.90 2.14 16 15 C -0.05 -0.02 2.47 88.67 0.22 0.20 16 16 N -0.60 0.56 11.58 24.11 0.28 0.84 16 17 Si 1.05 3.17 27.64 68.60 1.90 5.07 16 18 H -0.25 -1.53 7.11 99.48 0.71 -0.83 16 19 H -0.24 -0.37 5.99 99.48 0.60 0.22 16 20 H -0.25 -0.96 7.11 99.48 0.71 -0.25 16 21 H 0.06 -0.30 8.14 -2.39 -0.02 -0.32 16 22 H 0.08 -0.63 7.95 -2.39 -0.02 -0.65 16 23 H 0.09 -0.95 8.14 -2.38 -0.02 -0.97 16 24 H 0.10 -0.46 5.90 -2.39 -0.01 -0.48 16 25 H 0.10 -0.83 8.14 -2.39 -0.02 -0.85 16 26 H 0.05 -0.13 5.88 -2.39 -0.01 -0.15 16 27 H 0.08 -0.60 7.95 -2.39 -0.02 -0.62 16 28 H 0.23 -1.12 8.06 -2.91 -0.02 -1.14 16 29 H 0.17 1.18 7.88 -2.91 -0.02 1.16 16 30 H 0.09 -0.36 5.88 -2.39 -0.01 -0.38 16 31 H 0.07 -0.10 7.96 -2.39 -0.02 -0.12 16 32 H 0.08 -0.31 7.96 -2.39 -0.02 -0.33 16 33 H 0.07 -0.25 7.10 -2.39 -0.02 -0.27 16 34 H 0.07 -0.12 7.96 -2.39 -0.02 -0.14 16 35 H 0.08 -0.33 7.96 -2.39 -0.02 -0.34 16 36 H 0.07 -0.13 7.96 -2.39 -0.02 -0.15 16 37 H 0.07 -0.19 4.71 -2.39 -0.01 -0.20 16 38 H 0.08 -0.29 7.96 -2.39 -0.02 -0.31 16 39 H 0.07 -0.04 7.96 -2.39 -0.02 -0.06 16 40 H 0.34 -1.53 7.11 -92.71 -0.66 -2.19 16 Total: 0.00 -11.13 320.92 7.23 -3.90 By element: Atomic # 1 Polarization: -10.34 SS G_CDS: 1.00 Total: -9.34 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: 7.83 Total: 13.60 kcal Atomic # 7 Polarization: -4.77 SS G_CDS: -3.26 Total: -8.04 kcal Atomic # 8 Polarization: -0.33 SS G_CDS: -1.10 Total: -1.43 kcal Atomic # 14 Polarization: -1.46 SS G_CDS: 2.77 Total: 1.30 kcal Total: -11.13 7.23 -3.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000203516882.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.622 kcal (2) G-P(sol) polarization free energy of solvation -11.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -3.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds