Wall clock time and date at job start Mon Mar 30 2020 06:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46849 * 2 1 4 4 N 1.46906 * 109.46845 * 240.00023 * 2 1 3 5 5 C 1.53004 * 109.47014 * 120.00351 * 2 1 3 6 6 H 1.09000 * 109.47071 * 63.02339 * 5 2 1 7 7 C 1.50694 * 109.46673 * 183.02380 * 5 2 1 8 8 C 1.33394 * 125.20310 * 247.59430 * 7 5 2 9 9 C 1.38422 * 114.92282 * 180.02562 * 8 7 5 10 10 C 1.33389 * 114.91923 * 0.02562 * 9 8 7 11 11 S 1.75886 * 109.59768 * 359.97438 * 10 9 8 12 12 N 1.46900 * 109.46525 * 303.02278 * 5 2 1 13 13 C 1.46904 * 110.99441 * 209.07849 * 12 5 2 14 14 C 1.46900 * 110.99955 * 85.12922 * 12 5 2 15 15 H 1.08993 * 109.46763 * 312.05364 * 14 12 5 16 16 C 1.52998 * 109.47179 * 72.05853 * 14 12 5 17 17 C 1.50702 * 109.46784 * 192.05629 * 14 12 5 18 18 H 1.07996 * 120.00324 * 359.97438 * 17 14 12 19 19 C 1.37875 * 119.99750 * 179.97438 * 17 14 12 20 20 N 1.31517 * 120.00375 * 0.02562 * 19 17 14 21 21 Si 1.86804 * 119.99787 * 179.97438 * 19 17 14 22 22 H 1.48501 * 109.46894 * 90.00127 * 21 19 17 23 23 H 1.48504 * 109.47226 * 210.00005 * 21 19 17 24 24 H 1.48501 * 109.47201 * 330.00260 * 21 19 17 25 25 H 1.08998 * 109.47386 * 69.17015 * 1 2 3 26 26 H 1.09000 * 109.47470 * 189.17012 * 1 2 3 27 27 H 1.08998 * 109.47039 * 309.16924 * 1 2 3 28 28 H 1.00895 * 110.99950 * 60.00083 * 4 2 1 29 29 H 1.00895 * 110.99507 * 183.95424 * 4 2 1 30 30 H 1.07997 * 122.53773 * 0.02562 * 8 7 5 31 31 H 1.07997 * 122.54178 * 179.97438 * 9 8 7 32 32 H 1.08008 * 125.20242 * 180.02562 * 10 9 8 33 33 H 1.08998 * 109.47283 * 67.29878 * 13 12 5 34 34 H 1.08999 * 109.47243 * 187.29318 * 13 12 5 35 35 H 1.09001 * 109.47129 * 307.29534 * 13 12 5 36 36 H 1.09006 * 109.46919 * 179.97438 * 16 14 12 37 37 H 1.09002 * 109.47091 * 299.99382 * 16 14 12 38 38 H 1.08993 * 109.47673 * 60.00067 * 16 14 12 39 39 H 0.96999 * 120.00264 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0400 -0.7213 1.2492 6 1 1.7216 -1.7635 1.2225 7 6 3.5451 -0.6567 1.2872 8 6 4.3635 -1.7004 1.1441 9 6 5.7123 -1.3981 1.2158 10 6 5.9894 -0.1090 1.4177 11 16 4.4915 0.8062 1.5281 12 7 1.4915 -0.0723 2.4475 13 6 2.4039 -0.2185 3.5896 14 6 0.1582 -0.5991 2.7680 15 1 -0.4539 -0.6114 1.8662 16 6 0.2900 -2.0221 3.3145 17 6 -0.4929 0.2791 3.8052 18 1 0.0315 1.1420 4.1883 19 6 -1.7580 -0.0190 4.2650 20 7 -2.3964 -1.0702 3.7989 21 14 -2.5648 1.0692 5.5513 22 1 -3.3335 2.1461 4.8768 23 1 -3.4836 0.2527 6.3847 24 1 -1.5188 1.6739 6.4147 25 1 -0.3634 0.3654 -0.9605 26 1 -0.3634 -1.0145 0.1638 27 1 -0.3633 0.6491 0.7967 28 1 1.6961 -0.2350 -2.0385 29 1 3.0261 -0.7626 -1.1910 30 1 4.0010 -2.7051 0.9844 31 1 6.4821 -2.1491 1.1167 32 1 6.9819 0.3091 1.4998 33 1 3.3139 0.3516 3.4030 34 1 1.9196 0.1553 4.4917 35 1 2.6550 -1.2710 3.7215 36 1 -0.6994 -2.4128 3.5528 37 1 0.7609 -2.6573 2.5643 38 1 0.9021 -2.0098 4.2163 39 1 -3.2863 -1.2801 4.1227 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000220913992.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:18 Heat of formation + Delta-G solvation = 54.482765 kcal Electronic energy + Delta-G solvation = -19513.316221 eV Core-core repulsion = 16776.302051 eV Total energy + Delta-G solvation = -2737.014170 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.95026 -36.90289 -34.81744 -32.68435 -30.30721 -28.79360 -28.15477 -26.03557 -25.15307 -24.21114 -22.59979 -20.19801 -19.20430 -19.01736 -16.85570 -15.93336 -15.76386 -15.46229 -14.99997 -14.67231 -13.98267 -13.65796 -13.37059 -12.72114 -12.59823 -12.36435 -12.32198 -11.99583 -11.86230 -11.55784 -11.17798 -11.01144 -10.91133 -10.80263 -10.60218 -10.47191 -10.40360 -10.28103 -9.98627 -9.68674 -8.79818 -8.52656 -8.30886 -8.24386 -8.05935 -7.14365 -5.98421 -4.01022 1.20032 1.86820 2.28335 2.93991 3.32340 3.38995 3.42484 4.41281 4.64716 4.98206 5.18517 5.27062 5.33823 5.57709 5.62758 5.72427 5.78516 6.04418 6.18677 6.23436 6.34182 6.39024 6.47625 6.53041 6.59522 6.66924 6.73054 6.87673 6.92552 7.02365 7.20269 7.41103 7.51440 7.69975 7.74857 7.88070 8.17074 8.39662 8.60691 9.04754 9.63164 11.08473 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.025306 B = 0.006232 C = 0.005697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.170995 B = 4491.788587 C = 4913.785582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.107 3.893 3 H 0.036 0.964 4 N -0.847 5.847 5 C 0.150 3.850 6 H 0.069 0.931 7 C -0.149 4.149 8 C -0.147 4.147 9 C -0.132 4.132 10 C -0.239 4.239 11 S 0.121 5.879 12 N -0.524 5.524 13 C 0.026 3.974 14 C 0.189 3.811 15 H 0.069 0.931 16 C -0.172 4.172 17 C -0.496 4.496 18 H 0.061 0.939 19 C 0.058 3.942 20 N -0.894 5.894 21 Si 0.894 3.106 22 H -0.281 1.281 23 H -0.289 1.289 24 H -0.275 1.275 25 H 0.039 0.961 26 H 0.062 0.938 27 H 0.089 0.911 28 H 0.337 0.663 29 H 0.335 0.665 30 H 0.136 0.864 31 H 0.133 0.867 32 H 0.157 0.843 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.014 0.986 36 H 0.088 0.912 37 H 0.005 0.995 38 H 0.028 0.972 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.831 0.948 -6.946 14.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.005 4.005 3 H 0.054 0.946 4 N -0.377 5.377 5 C 0.039 3.961 6 H 0.087 0.913 7 C -0.267 4.267 8 C -0.177 4.177 9 C -0.163 4.163 10 C -0.374 4.374 11 S 0.384 5.616 12 N -0.249 5.249 13 C -0.123 4.123 14 C 0.083 3.917 15 H 0.087 0.913 16 C -0.231 4.231 17 C -0.534 4.534 18 H 0.079 0.921 19 C -0.142 4.142 20 N -0.534 5.534 21 Si 0.722 3.278 22 H -0.208 1.208 23 H -0.215 1.215 24 H -0.200 1.200 25 H 0.058 0.942 26 H 0.081 0.919 27 H 0.108 0.892 28 H 0.149 0.851 29 H 0.147 0.853 30 H 0.153 0.847 31 H 0.150 0.850 32 H 0.174 0.826 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.033 0.967 36 H 0.106 0.894 37 H 0.024 0.976 38 H 0.047 0.953 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 11.839 2.273 -6.516 13.704 hybrid contribution 0.569 -1.087 0.571 1.354 sum 12.408 1.186 -5.945 13.810 Atomic orbital electron populations 1.22063 0.93428 1.03258 1.01282 1.21214 0.96267 0.94399 0.88605 0.94618 1.58731 1.15782 1.58989 1.04210 1.20279 0.84799 0.98329 0.92714 0.91329 1.24775 0.99869 0.95622 1.06410 1.20132 0.92411 0.99789 1.05400 1.20074 0.96451 0.96014 1.03756 1.25689 1.02110 0.98117 1.11532 1.84467 0.95491 1.11128 1.70479 1.62456 1.04423 1.56154 1.01837 1.22515 0.96205 0.98316 0.95295 1.19898 0.83717 0.90157 0.97878 0.91329 1.22406 1.02897 1.00013 0.97806 1.21089 0.99954 1.10507 1.21881 0.92087 1.24898 0.97189 0.95331 0.96828 1.69883 1.13308 1.26366 1.43806 0.86563 0.79237 0.80388 0.81578 1.20754 1.21463 1.20046 0.94182 0.91923 0.89248 0.85075 0.85281 0.84668 0.84969 0.82575 0.92881 0.90754 0.96701 0.89366 0.97570 0.95267 0.93070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.61 7.74 37.16 0.29 -2.32 16 2 C 0.11 1.78 3.19 -67.71 -0.22 1.57 16 3 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 4 N -0.85 -11.93 9.24 -4.66 -0.04 -11.98 16 5 C 0.15 2.71 2.02 -68.87 -0.14 2.57 16 6 H 0.07 1.38 6.16 -51.93 -0.32 1.06 16 7 C -0.15 -2.34 2.68 -36.00 -0.10 -2.43 16 8 C -0.15 -2.10 9.97 -41.21 -0.41 -2.51 16 9 C -0.13 -1.63 10.18 -41.21 -0.42 -2.05 16 10 C -0.24 -2.90 11.23 29.04 0.33 -2.57 16 11 S 0.12 1.71 20.88 -107.50 -2.24 -0.53 16 12 N -0.52 -10.90 4.37 -229.69 -1.00 -11.90 16 13 C 0.03 0.52 7.39 60.07 0.44 0.96 16 14 C 0.19 4.55 1.54 -68.86 -0.11 4.44 16 15 H 0.07 1.73 3.81 -51.93 -0.20 1.54 16 16 C -0.17 -4.16 8.22 37.16 0.31 -3.85 16 17 C -0.50 -13.20 7.83 -34.44 -0.27 -13.47 16 18 H 0.06 1.65 7.34 -52.49 -0.39 1.27 16 19 C 0.06 1.58 5.30 -17.82 -0.09 1.48 16 20 N -0.89 -24.98 11.32 55.43 0.63 -24.35 16 21 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 1.24 7.22 -51.93 -0.37 0.87 16 27 H 0.09 1.87 6.39 -51.93 -0.33 1.54 16 28 H 0.34 4.09 9.04 -39.29 -0.36 3.73 16 29 H 0.33 4.45 7.95 -39.29 -0.31 4.14 16 30 H 0.14 1.87 8.06 -52.49 -0.42 1.44 16 31 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 32 H 0.16 1.50 8.06 -52.48 -0.42 1.07 16 33 H 0.05 0.96 4.94 -41.74 -0.21 0.75 16 34 H 0.07 1.61 6.79 -51.93 -0.35 1.26 16 35 H 0.01 0.30 6.81 -51.93 -0.35 -0.06 16 36 H 0.09 2.35 6.07 -51.93 -0.32 2.04 16 37 H 0.01 0.12 6.56 -51.93 -0.34 -0.22 16 38 H 0.03 0.69 6.57 -51.93 -0.34 0.35 16 39 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 LS Contribution 308.35 15.07 4.65 4.65 Total: -1.00 -27.31 308.35 -8.86 -36.17 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -5.43 Total: 9.95 kcal Atomic # 6 Polarization: -17.79 SS G_CDS: -0.39 Total: -18.18 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: -0.42 Total: -48.23 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -2.24 Total: -0.53 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -27.31 -8.86 -36.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220913992.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.657 kcal (2) G-P(sol) polarization free energy of solvation -27.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.174 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds