Wall clock time and date at job start Mon Mar 30 2020 06:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.46849 * 2 1 4 4 N 1.46906 * 109.46845 * 240.00023 * 2 1 3 5 5 C 1.53004 * 109.47014 * 120.00351 * 2 1 3 6 6 H 1.09000 * 109.47071 * 63.02339 * 5 2 1 7 7 C 1.50694 * 109.46673 * 183.02380 * 5 2 1 8 8 C 1.33394 * 125.20310 * 247.59430 * 7 5 2 9 9 C 1.38422 * 114.92282 * 180.02562 * 8 7 5 10 10 C 1.33389 * 114.91923 * 0.02562 * 9 8 7 11 11 S 1.75886 * 109.59768 * 359.97438 * 10 9 8 12 12 N 1.46900 * 109.46525 * 303.02278 * 5 2 1 13 13 C 1.46904 * 110.99441 * 209.07849 * 12 5 2 14 14 C 1.46900 * 110.99955 * 85.12922 * 12 5 2 15 15 H 1.08993 * 109.46763 * 312.05364 * 14 12 5 16 16 C 1.52998 * 109.47179 * 72.05853 * 14 12 5 17 17 C 1.50702 * 109.46784 * 192.05629 * 14 12 5 18 18 H 1.07996 * 120.00324 * 359.97438 * 17 14 12 19 19 C 1.37875 * 119.99750 * 179.97438 * 17 14 12 20 20 N 1.31517 * 120.00375 * 0.02562 * 19 17 14 21 21 Si 1.86804 * 119.99787 * 179.97438 * 19 17 14 22 22 H 1.48501 * 109.46894 * 90.00127 * 21 19 17 23 23 H 1.48504 * 109.47226 * 210.00005 * 21 19 17 24 24 H 1.48501 * 109.47201 * 330.00260 * 21 19 17 25 25 H 1.08998 * 109.47386 * 69.17015 * 1 2 3 26 26 H 1.09000 * 109.47470 * 189.17012 * 1 2 3 27 27 H 1.08998 * 109.47039 * 309.16924 * 1 2 3 28 28 H 1.00895 * 110.99950 * 60.00083 * 4 2 1 29 29 H 1.00895 * 110.99507 * 183.95424 * 4 2 1 30 30 H 1.07997 * 122.53773 * 0.02562 * 8 7 5 31 31 H 1.07997 * 122.54178 * 179.97438 * 9 8 7 32 32 H 1.08008 * 125.20242 * 180.02562 * 10 9 8 33 33 H 1.08998 * 109.47283 * 67.29878 * 13 12 5 34 34 H 1.08999 * 109.47243 * 187.29318 * 13 12 5 35 35 H 1.09001 * 109.47129 * 307.29534 * 13 12 5 36 36 H 1.09006 * 109.46919 * 179.97438 * 16 14 12 37 37 H 1.09002 * 109.47091 * 299.99382 * 16 14 12 38 38 H 1.08993 * 109.47673 * 60.00067 * 16 14 12 39 39 H 0.96999 * 120.00264 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0400 -0.7213 1.2492 6 1 1.7216 -1.7635 1.2225 7 6 3.5451 -0.6567 1.2872 8 6 4.3635 -1.7004 1.1441 9 6 5.7123 -1.3981 1.2158 10 6 5.9894 -0.1090 1.4177 11 16 4.4915 0.8062 1.5281 12 7 1.4915 -0.0723 2.4475 13 6 2.4039 -0.2185 3.5896 14 6 0.1582 -0.5991 2.7680 15 1 -0.4539 -0.6114 1.8662 16 6 0.2900 -2.0221 3.3145 17 6 -0.4929 0.2791 3.8052 18 1 0.0315 1.1420 4.1883 19 6 -1.7580 -0.0190 4.2650 20 7 -2.3964 -1.0702 3.7989 21 14 -2.5648 1.0692 5.5513 22 1 -3.3335 2.1461 4.8768 23 1 -3.4836 0.2527 6.3847 24 1 -1.5188 1.6739 6.4147 25 1 -0.3634 0.3654 -0.9605 26 1 -0.3634 -1.0145 0.1638 27 1 -0.3633 0.6491 0.7967 28 1 1.6961 -0.2350 -2.0385 29 1 3.0261 -0.7626 -1.1910 30 1 4.0010 -2.7051 0.9844 31 1 6.4821 -2.1491 1.1167 32 1 6.9819 0.3091 1.4998 33 1 3.3139 0.3516 3.4030 34 1 1.9196 0.1553 4.4917 35 1 2.6550 -1.2710 3.7215 36 1 -0.6994 -2.4128 3.5528 37 1 0.7609 -2.6573 2.5643 38 1 0.9021 -2.0098 4.2163 39 1 -3.2863 -1.2801 4.1227 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000220913992.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:48:17 Heat of formation + Delta-G solvation = 36.279842 kcal Electronic energy + Delta-G solvation = -19514.105559 eV Core-core repulsion = 16776.302051 eV Total energy + Delta-G solvation = -2737.803508 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 268.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.39690 -38.13560 -36.32365 -34.56948 -31.82350 -30.16992 -29.75035 -27.54787 -27.13645 -25.70533 -23.86674 -21.78048 -20.78430 -20.15863 -18.36506 -17.63804 -17.24562 -16.77342 -16.44754 -16.18801 -15.55275 -15.12596 -14.91255 -14.32006 -13.97803 -13.77583 -13.64792 -13.49771 -13.36757 -13.08935 -12.83785 -12.72398 -12.60570 -12.40039 -12.28822 -12.15197 -12.07566 -11.85896 -11.52476 -11.45827 -10.77527 -10.31651 -9.68845 -9.43567 -9.19625 -8.81868 -8.05967 -6.14528 0.12977 0.77848 1.22814 1.43029 1.44253 1.53652 1.90372 2.45384 3.20542 3.23443 3.72021 3.91259 4.11459 4.27217 4.32280 4.53026 4.60305 4.67378 4.73193 4.75666 4.80468 4.85854 4.92747 5.04248 5.11151 5.17216 5.24290 5.27813 5.44249 5.46739 5.59025 5.63750 5.76088 5.83444 6.23323 6.28785 6.51242 6.64760 6.77611 6.97857 7.53096 8.99790 Molecular weight = 268.13amu Principal moments of inertia in cm(-1) A = 0.025306 B = 0.006232 C = 0.005697 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.170995 B = 4491.788587 C = 4913.785582 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.116 3.884 3 H 0.035 0.965 4 N -0.842 5.842 5 C 0.156 3.844 6 H 0.045 0.955 7 C -0.178 4.178 8 C -0.138 4.138 9 C -0.137 4.137 10 C -0.218 4.218 11 S 0.103 5.897 12 N -0.528 5.528 13 C 0.035 3.965 14 C 0.194 3.806 15 H 0.056 0.944 16 C -0.158 4.158 17 C -0.507 4.507 18 H 0.052 0.948 19 C 0.014 3.986 20 N -0.919 5.919 21 Si 0.952 3.048 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.272 1.272 25 H 0.062 0.938 26 H 0.040 0.960 27 H 0.058 0.942 28 H 0.351 0.649 29 H 0.343 0.657 30 H 0.136 0.864 31 H 0.162 0.838 32 H 0.188 0.812 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.009 0.991 36 H 0.061 0.939 37 H 0.016 0.984 38 H 0.024 0.976 39 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.020 1.400 -7.518 16.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.004 3.996 3 H 0.053 0.947 4 N -0.375 5.375 5 C 0.045 3.955 6 H 0.062 0.938 7 C -0.295 4.295 8 C -0.169 4.169 9 C -0.167 4.167 10 C -0.353 4.353 11 S 0.366 5.634 12 N -0.252 5.252 13 C -0.114 4.114 14 C 0.087 3.913 15 H 0.073 0.927 16 C -0.217 4.217 17 C -0.546 4.546 18 H 0.070 0.930 19 C -0.185 4.185 20 N -0.560 5.560 21 Si 0.779 3.221 22 H -0.203 1.203 23 H -0.212 1.212 24 H -0.197 1.197 25 H 0.081 0.919 26 H 0.059 0.941 27 H 0.077 0.923 28 H 0.165 0.835 29 H 0.157 0.843 30 H 0.154 0.846 31 H 0.179 0.821 32 H 0.205 0.795 33 H 0.094 0.906 34 H 0.071 0.929 35 H 0.028 0.972 36 H 0.080 0.920 37 H 0.035 0.965 38 H 0.043 0.957 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 14.046 2.732 -7.106 15.976 hybrid contribution -0.011 -1.257 0.690 1.434 sum 14.035 1.475 -6.416 15.502 Atomic orbital electron populations 1.21892 0.94849 1.01133 1.01301 1.21001 0.94918 0.94402 0.89248 0.94714 1.58613 1.16449 1.58649 1.03757 1.20118 0.86858 0.96649 0.91842 0.93770 1.24459 0.98487 0.97042 1.09552 1.20347 0.93383 0.99427 1.03741 1.20309 0.96007 0.96882 1.03517 1.26050 1.02264 0.97556 1.09425 1.84508 0.96920 1.10969 1.71013 1.62337 1.03439 1.56389 1.03020 1.22444 0.96598 0.98202 0.94204 1.19678 0.85367 0.89602 0.96614 0.92663 1.22224 1.01205 1.00411 0.97879 1.21335 1.00303 1.10524 1.22405 0.92998 1.25585 0.97771 0.96492 0.98616 1.70003 1.13483 1.27595 1.44869 0.85643 0.78276 0.78834 0.79357 1.20281 1.21235 1.19700 0.91894 0.94118 0.92343 0.83538 0.84330 0.84610 0.82058 0.79454 0.90649 0.92942 0.97197 0.91996 0.96468 0.95660 0.93143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.98 7.74 71.98 0.56 -4.42 16 2 C 0.12 3.85 3.19 44.92 0.14 3.99 16 3 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 4 N -0.84 -22.59 9.24 -168.66 -1.56 -24.15 16 5 C 0.16 5.65 2.02 44.17 0.09 5.74 16 6 H 0.04 1.82 6.16 -2.39 -0.01 1.80 16 7 C -0.18 -5.35 2.68 24.59 0.07 -5.28 16 8 C -0.14 -3.63 9.97 21.22 0.21 -3.42 16 9 C -0.14 -2.87 10.18 21.22 0.22 -2.66 16 10 C -0.22 -4.42 11.23 66.72 0.75 -3.67 16 11 S 0.10 2.69 20.88 -56.49 -1.18 1.51 16 12 N -0.53 -22.31 4.37 -880.60 -3.85 -26.15 16 13 C 0.03 1.39 7.39 127.69 0.94 2.33 16 14 C 0.19 9.63 1.54 44.17 0.07 9.70 16 15 H 0.06 2.92 3.81 -2.39 -0.01 2.91 16 16 C -0.16 -7.86 8.22 71.98 0.59 -7.27 16 17 C -0.51 -27.69 7.83 25.60 0.20 -27.49 16 18 H 0.05 2.87 7.34 -2.91 -0.02 2.85 16 19 C 0.01 0.75 5.30 84.65 0.45 1.20 16 20 N -0.92 -52.60 11.32 21.45 0.24 -52.35 16 21 Si 0.95 44.00 29.54 68.60 2.03 46.02 16 22 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 23 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 24 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 25 H 0.06 1.97 8.14 -2.39 -0.02 1.96 16 26 H 0.04 1.66 7.22 -2.39 -0.02 1.64 16 27 H 0.06 2.53 6.39 -2.39 -0.02 2.51 16 28 H 0.35 7.85 9.04 -89.70 -0.81 7.04 16 29 H 0.34 8.47 7.95 -89.70 -0.71 7.76 16 30 H 0.14 3.52 8.06 -2.91 -0.02 3.49 16 31 H 0.16 2.47 8.06 -2.91 -0.02 2.45 16 32 H 0.19 2.63 8.06 -2.91 -0.02 2.61 16 33 H 0.08 2.68 4.94 -8.86 -0.04 2.63 16 34 H 0.05 2.31 6.79 -2.39 -0.02 2.29 16 35 H 0.01 0.39 6.81 -2.39 -0.02 0.37 16 36 H 0.06 3.41 6.07 -2.38 -0.01 3.40 16 37 H 0.02 0.77 6.56 -2.39 -0.02 0.75 16 38 H 0.02 1.22 6.57 -2.39 -0.02 1.20 16 39 H 0.26 14.23 8.31 -92.71 -0.77 13.46 16 Total: -1.00 -59.38 308.35 -0.51 -59.90 By element: Atomic # 1 Polarization: 26.95 SS G_CDS: -0.48 Total: 26.47 kcal Atomic # 6 Polarization: -35.53 SS G_CDS: 4.28 Total: -31.24 kcal Atomic # 7 Polarization: -97.50 SS G_CDS: -5.16 Total: -102.66 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: 2.69 SS G_CDS: -1.18 Total: 1.51 kcal Total: -59.38 -0.51 -59.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000220913992.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.177 kcal (2) G-P(sol) polarization free energy of solvation -59.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds